MS027126 (gene) Bitter gourd (TR) v1

Overview
NameMS027126
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold9_1: 38364 .. 38666 (+)
RNA-Seq ExpressionMS027126
SyntenyMS027126
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAAAAGAATGGCGGATAATATGGTAGCTGGTTCAAAGTGCTGTGTCCCGGAGCCGGAGAAGATCGCCGGAGATCAAGAGGAGGCGGCGGGCCAAGATGTGACGATATATATAACGATGAAGTCTCCCAACTCCACCCAAGTACTGGACAAACAGGTGGCGCTGCGGCGGATCCGTCAGCGTAAGCGAGTCAACAAGTTCCGGGCGGTGGTCGGAGCTCTCTTCAGCTCGCCTTTCACTGATAAAACCGGCGACGCTCGTCCGAGAAAGTGGGTCGACGAACCCTTCACTTCACTCTAG

mRNA sequence

ATGGCAAAAAGAATGGCGGATAATATGGTAGCTGGTTCAAAGTGCTGTGTCCCGGAGCCGGAGAAGATCGCCGGAGATCAAGAGGAGGCGGCGGGCCAAGATGTGACGATATATATAACGATGAAGTCTCCCAACTCCACCCAAGTACTGGACAAACAGGTGGCGCTGCGGCGGATCCGTCAGCGTAAGCGAGTCAACAAGTTCCGGGCGGTGGTCGGAGCTCTCTTCAGCTCGCCTTTCACTGATAAAACCGGCGACGCTCGTCCGAGAAAGTGGGTCGACGAACCCTTCACTTCACTCTAG

Coding sequence (CDS)

ATGGCAAAAAGAATGGCGGATAATATGGTAGCTGGTTCAAAGTGCTGTGTCCCGGAGCCGGAGAAGATCGCCGGAGATCAAGAGGAGGCGGCGGGCCAAGATGTGACGATATATATAACGATGAAGTCTCCCAACTCCACCCAAGTACTGGACAAACAGGTGGCGCTGCGGCGGATCCGTCAGCGTAAGCGAGTCAACAAGTTCCGGGCGGTGGTCGGAGCTCTCTTCAGCTCGCCTTTCACTGATAAAACCGGCGACGCTCGTCCGAGAAAGTGGGTCGACGAACCCTTCACTTCACTCTAG

Protein sequence

MAKRMADNMVAGSKCCVPEPEKIAGDQEEAAGQDVTIYITMKSPNSTQVLDKQVALRRIRQRKRVNKFRAVVGALFSSPFTDKTGDARPRKWVDEPFTSL
Homology
BLAST of MS027126 vs. NCBI nr
Match: KAG6585633.1 (hypothetical protein SDJN03_18366, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020540.1 hypothetical protein SDJN02_17225, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 113.2 bits (282), Expect = 1.3e-21
Identity = 60/83 (72.29%), Postives = 67/83 (80.72%), Query Frame = 0

Query: 25  GDQEE-------AAGQDVTIYITMKSPNSTQVLDKQVALRRIRQRKRVNKFRAVVGALFS 84
           GDQE+       AA  DVT +I +KS +STQVL+K V LRRIRQRKRVNKF+AVVGALFS
Sbjct: 12  GDQEKDKTVADAAASPDVTRHIRLKSSHSTQVLEKAVVLRRIRQRKRVNKFQAVVGALFS 71

Query: 85  SPFTDKTGDARPRKWVDEPFTSL 101
           SPF DKTG+AR RKWVDEPFTSL
Sbjct: 72  SPFGDKTGEARQRKWVDEPFTSL 94

BLAST of MS027126 vs. NCBI nr
Match: KAG6598407.1 (hypothetical protein SDJN03_08185, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 102.4 bits (254), Expect = 2.2e-18
Identity = 57/95 (60.00%), Postives = 67/95 (70.53%), Query Frame = 0

Query: 7   DNMVAGSKCCVPEPEKIAGDQEEAAGQDVTIYITMKSPNSTQV-LDKQVALRRIRQRKRV 66
           +N +AG++    E E     +  A G DVT +I +KS  STQV L+K V LRRIR RKRV
Sbjct: 12  ENSIAGAQ---EEAEMEMETEAAAVGPDVTRHIMVKSSRSTQVSLEKAVVLRRIRHRKRV 71

Query: 67  NKFRAVVGALFSSPFTDKTGDARPRKWVDEPFTSL 101
           NKF+AVVGALFSSPF DK  + R RKWVDEPFTSL
Sbjct: 72  NKFQAVVGALFSSPFADKADETRQRKWVDEPFTSL 103

BLAST of MS027126 vs. NCBI nr
Match: KAA0065270.1 (hypothetical protein E6C27_scaffold82G006120 [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 9.4e-17
Identity = 56/91 (61.54%), Postives = 62/91 (68.13%), Query Frame = 0

Query: 21  EKIAGDQEE---------AAGQDVTIYITMKS--PNSTQVLDKQVALRRIRQRKRVNKFR 80
           +KI GDQ E         A G  VT +I +KS   +S Q L+K V LRRIRQRKRVNK R
Sbjct: 13  KKIDGDQVEAEIETEVSAALGPAVTRHIVVKSSPSHSNQALEKAVVLRRIRQRKRVNKLR 72

Query: 81  AVVGALFSSPFTDKTGDARPRKWVDEPFTSL 101
           A VGALFSSPFTDKT +   RKWVDEPFTSL
Sbjct: 73  AAVGALFSSPFTDKTEETHQRKWVDEPFTSL 103

BLAST of MS027126 vs. NCBI nr
Match: KGN62559.1 (hypothetical protein Csa_022598 [Cucumis sativus])

HSP 1 Score: 90.9 bits (224), Expect = 6.8e-15
Identity = 61/108 (56.48%), Postives = 68/108 (62.96%), Query Frame = 0

Query: 18  PEP----EKIAGDQEEA----------AGQD-----VTIYITMKSPNST------QVLDK 77
           P+P    +KIAGDQ EA          AG D     VT +I +KS +S+      Q L+K
Sbjct: 6   PQPYSVEKKIAGDQVEAEIETESAAAGAGADALGPAVTRHIVVKSSSSSSSYQSNQALEK 65

Query: 78  QVALRRIRQRKRVNKFRAVVGALFSSPFTDKTGDARPRKWVDEPFTSL 101
            V LRRIRQRKRVNK RA VGALFSSPFTDKT     RKWVDEPFTSL
Sbjct: 66  AVVLRRIRQRKRVNKLRAAVGALFSSPFTDKT----ERKWVDEPFTSL 109

BLAST of MS027126 vs. NCBI nr
Match: KAG7029360.1 (Wall-associated receptor kinase-like 14, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 75.5 bits (184), Expect = 2.9e-10
Identity = 45/81 (55.56%), Postives = 55/81 (67.90%), Query Frame = 0

Query: 7  DNMVAGSKCCVPEPEKIAGDQEEAAGQDVTIYITMKSPNSTQV-LDKQVALRRIRQRKRV 66
          +N +AG++    E E     +  A G DVT +I +KS  STQV L+K V LRRIR RKRV
Sbjct: 12 ENSIAGAQ---EEAEMEMETEAAAVGPDVTRHIMVKSSRSTQVSLEKAVVLRRIRHRKRV 71

Query: 67 NKFRAVVGALFSSPFTDKTGD 87
          NKF+AVVGALFSSPF DK  +
Sbjct: 72 NKFQAVVGALFSSPFADKADE 89

BLAST of MS027126 vs. ExPASy TrEMBL
Match: A0A5A7VDJ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G006120 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 4.6e-17
Identity = 56/91 (61.54%), Postives = 62/91 (68.13%), Query Frame = 0

Query: 21  EKIAGDQEE---------AAGQDVTIYITMKS--PNSTQVLDKQVALRRIRQRKRVNKFR 80
           +KI GDQ E         A G  VT +I +KS   +S Q L+K V LRRIRQRKRVNK R
Sbjct: 13  KKIDGDQVEAEIETEVSAALGPAVTRHIVVKSSPSHSNQALEKAVVLRRIRQRKRVNKLR 72

Query: 81  AVVGALFSSPFTDKTGDARPRKWVDEPFTSL 101
           A VGALFSSPFTDKT +   RKWVDEPFTSL
Sbjct: 73  AAVGALFSSPFTDKTEETHQRKWVDEPFTSL 103

BLAST of MS027126 vs. ExPASy TrEMBL
Match: A0A0A0LNJ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G360760 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.3e-15
Identity = 61/108 (56.48%), Postives = 68/108 (62.96%), Query Frame = 0

Query: 18  PEP----EKIAGDQEEA----------AGQD-----VTIYITMKSPNST------QVLDK 77
           P+P    +KIAGDQ EA          AG D     VT +I +KS +S+      Q L+K
Sbjct: 6   PQPYSVEKKIAGDQVEAEIETESAAAGAGADALGPAVTRHIVVKSSSSSSSYQSNQALEK 65

Query: 78  QVALRRIRQRKRVNKFRAVVGALFSSPFTDKTGDARPRKWVDEPFTSL 101
            V LRRIRQRKRVNK RA VGALFSSPFTDKT     RKWVDEPFTSL
Sbjct: 66  AVVLRRIRQRKRVNKLRAAVGALFSSPFTDKT----ERKWVDEPFTSL 109

BLAST of MS027126 vs. ExPASy TrEMBL
Match: A0A2N9G0R5 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20842 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.9e-08
Identity = 39/83 (46.99%), Postives = 52/83 (62.65%), Query Frame = 0

Query: 23  IAGDQEEAAGQ---DVTIYITMKSPNSTQVLDKQVALRRIRQRKRVNKFRAVVGALFSSP 82
           IA D+E+   +    VT ++ +K  +STQ LDK+V LRRIRQRKRVNK +A   AL SSP
Sbjct: 23  IAVDEEQEVPETQNPVTSHLYIKPTHSTQPLDKEVVLRRIRQRKRVNKVKATFQALVSSP 82

Query: 83  FTDKTG--DARPRKWVDEPFTSL 101
           F+ K        +KW D+ F +L
Sbjct: 83  FSAKPDKVSVHKKKWADDAFAAL 105

BLAST of MS027126 vs. ExPASy TrEMBL
Match: A0A6A4LFT7 (Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_10847 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 5.1e-08
Identity = 33/68 (48.53%), Postives = 46/68 (67.65%), Query Frame = 0

Query: 35  VTIYITMKSPNSTQVLDKQVALRRIRQRKRVNKFRAVVGALFSSPFTDKTGD---ARPRK 94
           VT ++ +K  +ST+ LDK+V LRR+RQRKR++K    V AL +SPF  K GD    R +K
Sbjct: 35  VTTHLYLKPTHSTETLDKEVVLRRLRQRKRMSKVGTAVKALLTSPFASKPGDKASVRHKK 94

Query: 95  WVDEPFTS 100
           WVD+ F +
Sbjct: 95  WVDDAFAA 102

BLAST of MS027126 vs. ExPASy TrEMBL
Match: A0A7N2KSH1 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 6.6e-08
Identity = 34/68 (50.00%), Postives = 48/68 (70.59%), Query Frame = 0

Query: 35  VTIYITMKSPNSTQVLDKQVALRRIRQRKRVNKFRAVVGALFSSPFT---DKTGDARPRK 94
           VT ++ +K  +STQ LDK+V LRRIRQRKRVNK++A+V AL SS F+   +K      +K
Sbjct: 38  VTSHLYIKPTDSTQTLDKEVVLRRIRQRKRVNKWKAMVQALVSSAFSAKPEKAVSVHGKK 97

Query: 95  WVDEPFTS 100
           W+D+ F +
Sbjct: 98  WIDDAFAA 105

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6585633.11.3e-2172.29hypothetical protein SDJN03_18366, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6598407.12.2e-1860.00hypothetical protein SDJN03_08185, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0065270.19.4e-1761.54hypothetical protein E6C27_scaffold82G006120 [Cucumis melo var. makuwa][more]
KGN62559.16.8e-1556.48hypothetical protein Csa_022598 [Cucumis sativus][more]
KAG7029360.12.9e-1055.56Wall-associated receptor kinase-like 14, partial [Cucurbita argyrosperma subsp. ... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VDJ54.6e-1761.54Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A0A0LNJ03.3e-1556.48Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G360760 PE=4 SV=1[more]
A0A2N9G0R53.9e-0846.99Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20842 PE=4 SV=1[more]
A0A6A4LFT75.1e-0848.53Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3... [more]
A0A7N2KSH16.6e-0850.00Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35324:SF4BNAA08G03750D PROTEINcoord: 23..100
NoneNo IPR availablePANTHERPTHR35324BNAA08G03750D PROTEINcoord: 23..100

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS027126.1MS027126.1mRNA