MS026872 (gene) Bitter gourd (TR) v1

Overview


Name	MS026872
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Reverse transcriptase
Location	scaffold943_2: 821819 .. 822890 (-)
RNA-Seq Expression	MS026872
Synteny	MS026872

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCGTTCCTTTGGAGGAGTCTTATTTGGGGGAAAGAGTTGCTTCAGTATGGTGTCTGGTGGAGAGCAGGTAATGTGAAGCATCCGAATAGGACAACATAACTGGATTCCTAACGGTCCAACTCCCATTCTCCAACAACCAGAGGCAGATAGAAATATGATGGTTTCTAATCTCATACATCCTATGGGAGGTTGGAACGAACCCCTGATTCGAGATCTTTTTATGCAATTGGATGTTGATCAAATTTTAGATATGACACTTCCTCGAATAAGTTGTGTTGATAGGGTGATGTGGCAATACTCTAAAAATGGTATTTTTACTGTTAGAAGTGGGTACCATGTGGCTAACGAGCGAAAGCCTCATCCTAACTCTTCTAATACAGTAGATATGGAGTAGTGGTGGTAGCTGTTATGGAGCTTGAATATACCAAATAAGATTAAAATTTTTGGGTGGAAAATGTTCAAGAATTTCCTTCCTACGGGGGCCACCATTCGGAGAAGATGGATTGAATCTGAAGAACGTTGTGCGAGATGTGGTTTTGTACAAGAAGACACTCTCGACAACGATGGCATCCCCCTCCAAACGATATGCTCAAACTGAACATAGATGCGGCGATTAGAAGCTTGGATAGAGAGTGGGCATAGGTGCAATCATCAGAGATAAGAGAGGGGAAGTGTTTCTGACCTTTCTGAAGACCATCCTAAGGGCTCTAGAAGTGGATGAAATGGAAGCCATGGCCATTAGAGAGAGCCTAGTGGTAGCTACGGAAGCCGGGTTCACAAATCTTGTCATTGAAACCGACTCTCTAAGAGTTTACTCACTTCTTTAGTTCAATAAGGAAGATTTCACAACTGTAGGTATGATTACTAAAGAAATCTCAAATATGGCGAAACATCTAAGGAAAGTTGTGTTCACCTGGTGCCGAAGGGAAGCAAATCGAGTTGCCCATGCAGCAGCAAAATTAGCTGTAAACGAGGTTTTGGAGGGCGTTTGGATAGAAGAAGCTCCCGAAGCCATGAATGAAGTTCTGAATTTTGATTTTAGGGATTTTACCCATGGAAACTACTGA

mRNA sequence

ATGCCTCGTTCCTTTGGAGGAGTCTTATTTGGGGGAAAGAGTTGCTTCAGTATGGTGTCTGGTGGAGAGCAGTTCAATAAGGAAGATTTCACAACTGTAGGTATGATTACTAAAGAAATCTCAAATATGGCGAAACATCTAAGGAAAGTTGTGTTCACCTGGTGCCGAAGGGAAGCAAATCGAGTTGCCCATGCAGCAGCAAAATTAGCTGTAAACGAGGTTTTGGAGGGCGTTTGGATAGAAGAAGCTCCCGAAGCCATGAATGAAGTTCTGAATTTTGATTTTAGGGATTTTACCCATGGAAACTACTGA

Coding sequence (CDS)

ATGCCTCGTTCCTTTGGAGGAGTCTTATTTGGGGGAAAGAGTTGCTTCAGTATGGTGTCTGGTGGAGAGCAGTTCAATAAGGAAGATTTCACAACTGTAGGTATGATTACTAAAGAAATCTCAAATATGGCGAAACATCTAAGGAAAGTTGTGTTCACCTGGTGCCGAAGGGAAGCAAATCGAGTTGCCCATGCAGCAGCAAAATTAGCTGTAAACGAGGTTTTGGAGGGCGTTTGGATAGAAGAAGCTCCCGAAGCCATGAATGAAGTTCTGAATTTTGATTTTAGGGATTTTACCCATGGAAACTACTGA

Protein sequence

MPRSFGGVLFGGKSCFSMVSGGEQFNKEDFTTVGMITKEISNMAKHLRKVVFTWCRREANRVAHAAAKLAVNEVLEGVWIEEAPEAMNEVLNFDFRDFTHGNY

Homology

[Close]

BLAST of MS026872 vs. NCBI nr
Match: XP_030924586.1 (uncharacterized protein LOC115951544 [Quercus lobata])

HSP 1 Score: 54.7 bits (130), Expect = 5.5e-04
Identity = 25/69 (36.23%), Postives = 46/69 (66.67%), Query Frame = 0


Query: 26  NKEDFTTVGMITKEISNMAKHLRKVVFTWCRREANRVAHAAAKLAVNEVLEGVWIEEAPE 85
           ++EDF+ +G + ++I  +A+ LR+V F++ +R AN VAH+ A+ A N V +  W+E++P 
Sbjct: 115 SREDFSRLGHVIQDIKWLAQGLRRVSFSYVKRGANSVAHSLARFAKNVVDDMYWLEDSPP 174

Query: 86  AMNEVLNFD 95
              + L +D
Sbjct: 175 PALDALYYD 183

[Close]

BLAST of MS026872 vs. NCBI nr
Match: XP_021739472.1 (uncharacterized protein LOC110705848 [Chenopodium quinoa])

HSP 1 Score: 54.7 bits (130), Expect = 5.5e-04
Identity = 28/68 (41.18%), Postives = 41/68 (60.29%), Query Frame = 0


Query: 27  KEDFTTVGMITKEISNMAKHLRKVVFTWCRREANRVAHAAAKLAVNEVLEGVWIEEAPEA 86
           KED T  G+ITK+I  +A    +  F + +R  N+VAH+ AKL+   V   VW+EE P  
Sbjct: 195 KEDLTAFGLITKDILKLANSCHECSFAFVKRTGNQVAHSLAKLSSKFVSLRVWLEEYPIE 254

Query: 87  MNEVLNFD 95
           ++EV+  D
Sbjct: 255 IHEVVMAD 262

[Close]

BLAST of MS026872 vs. ExPASy TrEMBL
Match: A0A5B6V4L7 (Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_008285 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 7.8e-04
Identity = 28/76 (36.84%), Postives = 42/76 (55.26%), Query Frame = 0


Query: 27  KEDFTTVGMITKEISNMAKHLRKVVFTWCRREANRVAHAAAKLAVNEVLEGVWIEEAPEA 86
           +ED + +  + KEI     + R V F +  REAN+VAHA A+          WIEEAP A
Sbjct: 420 EEDRSCISNLIKEIKGKVVNFRSVSFKYVPREANKVAHAMAQEGARYEQPRYWIEEAPHA 479

Query: 87  MNEVLNFDFRDFTHGN 103
           +  ++N + R+  HG+
Sbjct: 480 VEVLVNQEKRNGIHGS 495

[Close]

BLAST of MS026872 vs. ExPASy TrEMBL
Match: A0A5B6UQ73 (Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_013896 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 7.8e-04
Identity = 28/76 (36.84%), Postives = 42/76 (55.26%), Query Frame = 0


Query: 27  KEDFTTVGMITKEISNMAKHLRKVVFTWCRREANRVAHAAAKLAVNEVLEGVWIEEAPEA 86
           +ED + +  + KEI     + R V F +  REAN+VAHA A+          WIEEAP A
Sbjct: 555 EEDRSCISNLIKEIKGKVVNFRSVSFKYVPREANKVAHAMAQEGARYEQPRYWIEEAPHA 614

Query: 87  MNEVLNFDFRDFTHGN 103
           +  ++N + R+  HG+
Sbjct: 615 VEVLVNQEKRNGIHGS 630

The following BLAST results are available for this feature:

BLAST of MS026872 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_030924586.1	5.5e-04	36.23	uncharacterized protein LOC115951544 [Quercus lobata]	[more]
XP_021739472.1	5.5e-04	41.18	uncharacterized protein LOC110705848 [Chenopodium quinoa]	[more]

BLAST of MS026872 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS026872 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5B6V4L7	7.8e-04	36.84	Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_008285 PE=4 SV=1	[more]
A0A5B6UQ73	7.8e-04	36.84	Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_013896 PE=4 SV=1	[more]

BLAST of MS026872 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 13..76 e-value: 1.9E-5 score: 26.6
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 31..70 e-value: 1.1E-7 score: 31.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS026872.1	MS026872.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity