MS026851 (gene) Bitter gourd (TR) v1

Overview


Name	MS026851
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold462: 136227 .. 136667 (-)
RNA-Seq Expression	MS026851
Synteny	MS026851

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTAAGGGATTTCGTTCATTTAACTGACTTTGACATCGAAGCCCGTGCGACTAAGGTTGCCTGGTTTAGTCTGATTTGGATTTTGCAGGTTCCCAATTATTGGAGTTGTTGTAGACCCCGAGACAATATCCATCGGAATCTTTCACGCATCAACAATTGGTGCCGTCTGTGGGGACGTGTAATCGTACAACCAATCATGACTCCGGAGAAAAGTCCACAATGCTCTGATGACGATTGTCATCCAAGAAGGAGGCTCAACAGGGATGATCCTCAAATAGGAGGAGCTGGAGACGGAACGAGCCAACTAGGAGGCCGAGAACTGCTCGAGATCCGTGTTACCGCCGTCCCGGAGCAATTCCAGAGTAAGTTTGTAGTCCTGGAAGAAAAGGTGGAAAGAATGTTTCAGCGCATGACCCAACTACTCAAACAATTAGAGTAG

mRNA sequence

ATGCTAAGGGATTTCGTTCATTTAACTGACTTTGACATCGAAGCCCGTGCGACTAAGGTTGCCTGGTTTAGTCTGATTTGGATTTTGCAGGTTCCCAATTATTGGAGTTGTTGTAGACCCCGAGACAATATCCATCGGAATCTTTCACGCATCAACAATTGGTGCCGTCTGTGGGGACGTGTAATCGTACAACCAATCATGACTCCGGAGAAAAGTCCACAATGCTCTGATGACGATTGTCATCCAAGAAGGAGGCTCAACAGGGATGATCCTCAAATAGGAGGAGCTGGAGACGGAACGAGCCAACTAGGAGGCCGAGAACTGCTCGAGATCCGTGTTACCGCCGTCCCGGAGCAATTCCAGAGTAAGTTTGTAGTCCTGGAAGAAAAGGTGGAAAGAATGTTTCAGCGCATGACCCAACTACTCAAACAATTAGAGTAG

Coding sequence (CDS)

ATGCTAAGGGATTTCGTTCATTTAACTGACTTTGACATCGAAGCCCGTGCGACTAAGGTTGCCTGGTTTAGTCTGATTTGGATTTTGCAGGTTCCCAATTATTGGAGTTGTTGTAGACCCCGAGACAATATCCATCGGAATCTTTCACGCATCAACAATTGGTGCCGTCTGTGGGGACGTGTAATCGTACAACCAATCATGACTCCGGAGAAAAGTCCACAATGCTCTGATGACGATTGTCATCCAAGAAGGAGGCTCAACAGGGATGATCCTCAAATAGGAGGAGCTGGAGACGGAACGAGCCAACTAGGAGGCCGAGAACTGCTCGAGATCCGTGTTACCGCCGTCCCGGAGCAATTCCAGAGTAAGTTTGTAGTCCTGGAAGAAAAGGTGGAAAGAATGTTTCAGCGCATGACCCAACTACTCAAACAATTAGAGTAG

Protein sequence

MLRDFVHLTDFDIEARATKVAWFSLIWILQVPNYWSCCRPRDNIHRNLSRINNWCRLWGRVIVQPIMTPEKSPQCSDDDCHPRRRLNRDDPQIGGAGDGTSQLGGRELLEIRVTAVPEQFQSKFVVLEEKVERMFQRMTQLLKQLE

Homology

[Close]

BLAST of MS026851 vs. NCBI nr
Match: XP_022145129.1 (uncharacterized protein LOC111014646 [Momordica charantia])

HSP 1 Score: 84.7 bits (208), Expect = 7.1e-13
Identity = 48/83 (57.83%), Postives = 58/83 (69.88%), Query Frame = 0


Query: 67  MTPEKSPQCSDDDCHPRRRLNRDDPQIGGAGDGTSQ--LGGRE-LLEIRVTAVPEQFQSK 126
           MTPE+SP+ SDD+C  +RRLN DDPQ+GG  DGTSQ  L  +E L E      PE  Q +
Sbjct: 1   MTPERSPRRSDDNCSAKRRLNLDDPQVGGPEDGTSQPNLERQEGLPEAHALTTPEPLQKQ 60

Query: 127 FVVLEEKVERMFQRMTQLLKQLE 147
           F VLE+KVE M QRMTQ+L+Q E
Sbjct: 61  FAVLEDKVEGMLQRMTQVLRQYE 83

[Close]

BLAST of MS026851 vs. NCBI nr
Match: XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])

HSP 1 Score: 69.3 bits (168), Expect = 3.1e-08
Identity = 36/67 (53.73%), Postives = 42/67 (62.69%), Query Frame = 0


Query: 67  MTPEKSPQCSDDDCHPRRRLNRDDPQIGGAGDGTSQLGGRE---LLEIRVTAVPEQFQSK 126
           MTPE+SP+ SDDDC  +RRLN  DPQ+GG  DGTSQ        L E      PE FQ +
Sbjct: 1   MTPERSPRRSDDDCSAKRRLNLGDPQVGGPEDGTSQPNQERQEGLXEXXALTTPEPFQKQ 60

Query: 127 FVVLEEK 131
           F VLE+K
Sbjct: 61  FAVLEDK 67

[Close]

BLAST of MS026851 vs. ExPASy TrEMBL
Match: A0A6J1CUA7 (uncharacterized protein LOC111014646 OS=Momordica charantia OX=3673 GN=LOC111014646 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 3.4e-13
Identity = 48/83 (57.83%), Postives = 58/83 (69.88%), Query Frame = 0


Query: 67  MTPEKSPQCSDDDCHPRRRLNRDDPQIGGAGDGTSQ--LGGRE-LLEIRVTAVPEQFQSK 126
           MTPE+SP+ SDD+C  +RRLN DDPQ+GG  DGTSQ  L  +E L E      PE  Q +
Sbjct: 1   MTPERSPRRSDDNCSAKRRLNLDDPQVGGPEDGTSQPNLERQEGLPEAHALTTPEPLQKQ 60

Query: 127 FVVLEEKVERMFQRMTQLLKQLE 147
           F VLE+KVE M QRMTQ+L+Q E
Sbjct: 61  FAVLEDKVEGMLQRMTQVLRQYE 83

[Close]

BLAST of MS026851 vs. ExPASy TrEMBL
Match: A0A6J1DWY0 (uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025293 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.5e-08
Identity = 36/67 (53.73%), Postives = 42/67 (62.69%), Query Frame = 0


Query: 67  MTPEKSPQCSDDDCHPRRRLNRDDPQIGGAGDGTSQLGGRE---LLEIRVTAVPEQFQSK 126
           MTPE+SP+ SDDDC  +RRLN  DPQ+GG  DGTSQ        L E      PE FQ +
Sbjct: 1   MTPERSPRRSDDDCSAKRRLNLGDPQVGGPEDGTSQPNQERQEGLXEXXALTTPEPFQKQ 60

Query: 127 FVVLEEK 131
           F VLE+K
Sbjct: 61  FAVLEDK 67

The following BLAST results are available for this feature:

BLAST of MS026851 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145129.1	7.1e-13	57.83	uncharacterized protein LOC111014646 [Momordica charantia]	[more]
XP_022158830.1	3.1e-08	53.73	uncharacterized protein LOC111025293 [Momordica charantia]	[more]

BLAST of MS026851 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS026851 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CUA7	3.4e-13	57.83	uncharacterized protein LOC111014646 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A6J1DWY0	1.5e-08	53.73	uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]

BLAST of MS026851 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 128..146
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS026851.1	MS026851.1	mRNA