MS026741 (gene) Bitter gourd (TR) v1

Overview
NameMS026741
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold586: 23578 .. 24000 (+)
RNA-Seq ExpressionMS026741
SyntenyMS026741
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGCTCTCCAGCAAGCTGAAGATTGCCGCTGACGAAGACGAGCACGCCGCCGTTGGGGCCGGAAGGCTGGCAATCGACGGTGGTAACGGAGTGCTGGCACTGCTGGAAGGGGAGGCCAGTGAGCTTGGCGACGATATTCTGCGCGCCTTGGATCTTCTGACCTTCAAACGTCAACATGGAATTGTCCTGGTAGAGATTCGCAAGACCGGTTCGATTGGCGTCGAAGGTGGAGTAATAATGTTCAACGAATGCCTTCGCCACCGCGTCGGGATCCATTACCGCAATCTTCGAATCCACCGCCGGGAAAGAGATTACAGAGATTCGCTCTCCTCCGCCCTGCTTGAGAACAACGCTGAGTTTTACAGAGAAAAAATGGAGACGACAGCGTTGGCCGAGGGTTCCAGAAACTTTGAGGGTTAA

mRNA sequence

ATGTTGCTCTCCAGCAAGCTGAAGATTGCCGCTGACGAAGACGAGCACGCCGCCGTTGGGGCCGGAAGGCTGGCAATCGACGGTGGTAACGGAGTGCTGGCACTGCTGGAAGGGGAGGCCAGTGAGCTTGGCGACGATATTCTGCGCGCCTTGGATCTTCTGACCTTCAAACGTCAACATGGAATTGTCCTGGTAGAGATTCGCAAGACCGGTTCGATTGGCGTCGAAGGTGGAGTAATAATGTTCAACGAATGCCTTCGCCACCGCGTCGGGATCCATTACCGCAATCTTCGAATCCACCGCCGGGAAAGAGATTACAGAGATTCGCTCTCCTCCGCCCTGCTTGAGAACAACGCTGAGTTTTACAGAGAAAAAATGGAGACGACAGCGTTGGCCGAGGGTTCCAGAAACTTTGAGGGTTAA

Coding sequence (CDS)

ATGTTGCTCTCCAGCAAGCTGAAGATTGCCGCTGACGAAGACGAGCACGCCGCCGTTGGGGCCGGAAGGCTGGCAATCGACGGTGGTAACGGAGTGCTGGCACTGCTGGAAGGGGAGGCCAGTGAGCTTGGCGACGATATTCTGCGCGCCTTGGATCTTCTGACCTTCAAACGTCAACATGGAATTGTCCTGGTAGAGATTCGCAAGACCGGTTCGATTGGCGTCGAAGGTGGAGTAATAATGTTCAACGAATGCCTTCGCCACCGCGTCGGGATCCATTACCGCAATCTTCGAATCCACCGCCGGGAAAGAGATTACAGAGATTCGCTCTCCTCCGCCCTGCTTGAGAACAACGCTGAGTTTTACAGAGAAAAAATGGAGACGACAGCGTTGGCCGAGGGTTCCAGAAACTTTGAGGGTTAA

Protein sequence

MLLSSKLKIAADEDEHAAVGAGRLAIDGGNGVLALLEGEASELGDDILRALDLLTFKRQHGIVLVEIRKTGSIGVEGGVIMFNECLRHRVGIHYRNLRIHRRERDYRDSLSSALLENNAEFYREKMETTALAEGSRNFEG
Homology
BLAST of MS026741 vs. NCBI nr
Match: KAF2611779.1 (hypothetical protein F2Q70_00012608 [Brassica cretica])

HSP 1 Score: 104.0 bits (258), Expect = 1.1e-18
Identity = 53/105 (50.48%), Postives = 75/105 (71.43%), Query Frame = 0

Query: 1   MLLSSKLKIAADEDEHAAVGAGRLAIDGGNGVLALLEGEASELGDDILRALDLLTFKRQH 60
           +LL+ +L++A DE+EH   G  RLA+DGG+ VLALLE E  ELGDD+L + DLLTF+ +H
Sbjct: 33  VLLAGELEVAGDENEHTGGGTRRLAVDGGDVVLALLERERCELGDDVLDSKDLLTFEGEH 92

Query: 61  GIVLVEIRKTGSIGVEGGVIMFNECLRHRVGIHYRNLRIHRRERD 106
           G  LVE  +  ++ VEG V++ +E L HR+GIH R+ R + RE +
Sbjct: 93  GSFLVETGEADTVVVEGRVVVLDEGLSHRIGIHLRHYRENERETE 137

BLAST of MS026741 vs. NCBI nr
Match: RYR16994.1 (hypothetical protein Ahy_B03g061810 isoform B [Arachis hypogaea])

HSP 1 Score: 99.0 bits (245), Expect = 3.5e-17
Identity = 49/90 (54.44%), Postives = 68/90 (75.56%), Query Frame = 0

Query: 4   SSKLKIAADEDEHAAVGAGRLAIDGGNGVLALLEGEASELGDDILRALDLLTFKRQHGIV 63
           +S  ++AADED+HA  G G LA++GG+GV AL+E E  ELGDD+L ALDLL F+ +HG V
Sbjct: 33  TSIFQVAADEDKHAVGGGGGLAVNGGDGVKALVERERGELGDDVLGALDLLAFEGEHGAV 92

Query: 64  LVEIRKTGSIGVEGGVIMFNECLRHRVGIH 94
           LVE+ ++G++ VE  V++FNE L  R+ IH
Sbjct: 93  LVEVHQSGAVVVERRVVVFNERLCQRICIH 122

BLAST of MS026741 vs. NCBI nr
Match: XP_020202557.1 (uncharacterized protein LOC109788280 [Cajanus cajan])

HSP 1 Score: 95.9 bits (237), Expect = 2.9e-16
Identity = 46/81 (56.79%), Postives = 62/81 (76.54%), Query Frame = 0

Query: 1   MLLSSKLKIAADEDEHAAVGAGRLAIDGGNGVLALLEGEASELGDDILRALDLLTFKRQH 60
           +L S +L++AADEDEHA V AG LA+DGG+GV+ALLE E SE GDD+  ALDLL  + +H
Sbjct: 27  VLFSGELEVAADEDEHAGVDAGGLAVDGGDGVVALLEREGSEFGDDVGGALDLLALEGEH 86

Query: 61  GIVLVEIRKTGSIGVEGGVIM 82
           G +L+E  +  S+GVEG V++
Sbjct: 87  GTILIETHQACSVGVEGAVVV 107

BLAST of MS026741 vs. NCBI nr
Match: XP_020202559.1 (uncharacterized protein LOC109788282 [Cajanus cajan])

HSP 1 Score: 95.9 bits (237), Expect = 2.9e-16
Identity = 46/81 (56.79%), Postives = 62/81 (76.54%), Query Frame = 0

Query: 1   MLLSSKLKIAADEDEHAAVGAGRLAIDGGNGVLALLEGEASELGDDILRALDLLTFKRQH 60
           +L S +L++AADEDEHA V AG LA+DGG+GV+ALLE E SE GDD+  ALDLL  + +H
Sbjct: 195 VLFSGELEVAADEDEHAGVDAGGLAVDGGDGVVALLEREGSEFGDDVGGALDLLALEGEH 254

Query: 61  GIVLVEIRKTGSIGVEGGVIM 82
           G +L+E  +  S+GVEG V++
Sbjct: 255 GTILIETHQACSVGVEGAVVV 275

BLAST of MS026741 vs. NCBI nr
Match: KAF3509038.1 (hypothetical protein F2Q69_00008085 [Brassica cretica])

HSP 1 Score: 82.8 bits (203), Expect = 2.6e-12
Identity = 44/76 (57.89%), Postives = 54/76 (71.05%), Query Frame = 0

Query: 1   MLLSSKLKIAADEDEHAAVGAGRLAIDGGNGVLALLEGEASELGDDILRALDLLTFKRQH 60
           +LL+S+L+I  DEDEH A G   LAIDGG+ VLALLEGEA ELGDD+LRALDLL F+ QH
Sbjct: 190 VLLASELEITGDEDEHTAGGTRGLAIDGGDVVLALLEGEAGELGDDVLRALDLLPFEGQH 249

Query: 61  GIVLVEIRKTGSIGVE 77
              L   ++     +E
Sbjct: 250 RSFLTTSKRLADRKIE 265

BLAST of MS026741 vs. ExPASy TrEMBL
Match: A0A1J3EJ41 (Uncharacterized protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=LC_TR9696_c0_g1_i1_g.34225 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.1e-19
Identity = 65/125 (52.00%), Postives = 81/125 (64.80%), Query Frame = 0

Query: 1   MLLSSKLKIAADEDEHAAVGAGRLAIDGGNGVLALLEGEASELGDDILRALDLLTFKRQH 60
           +L +S+LKIA D+DEHAA G  RLAIDGG+ VLALLEGEA EL DD+LRALDLL F+ QH
Sbjct: 10  VLFASELKIAGDKDEHAAGGTRRLAIDGGDVVLALLEGEAGELSDDVLRALDLLAFEGQH 69

Query: 61  GIVLVEIRKTGSIGVEGGVIMFNECLRHRVGIHYRNLRIHRRERDYRDSLSSALLENNAE 120
           G  LVE  +  +I +EGGV++ +E L + V IH   L +         SL+S       E
Sbjct: 70  GSFLVERNQPCTIRIEGGVVVLDESLGNCVWIHLYRLPL------ILLSLASCFQSTEKE 128

Query: 121 FYREK 126
             REK
Sbjct: 130 REREK 128

BLAST of MS026741 vs. ExPASy TrEMBL
Match: A0A444ZSB9 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B03g061810 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.7e-17
Identity = 49/90 (54.44%), Postives = 68/90 (75.56%), Query Frame = 0

Query: 4   SSKLKIAADEDEHAAVGAGRLAIDGGNGVLALLEGEASELGDDILRALDLLTFKRQHGIV 63
           +S  ++AADED+HA  G G LA++GG+GV AL+E E  ELGDD+L ALDLL F+ +HG V
Sbjct: 33  TSIFQVAADEDKHAVGGGGGLAVNGGDGVKALVERERGELGDDVLGALDLLAFEGEHGAV 92

Query: 64  LVEIRKTGSIGVEGGVIMFNECLRHRVGIH 94
           LVE+ ++G++ VE  V++FNE L  R+ IH
Sbjct: 93  LVEVHQSGAVVVERRVVVFNERLCQRICIH 122

BLAST of MS026741 vs. ExPASy TrEMBL
Match: A0A0P0XIR8 (Os08g0532350 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0532350 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.4e-08
Identity = 40/93 (43.01%), Postives = 59/93 (63.44%), Query Frame = 0

Query: 1   MLLSSKLKIAADEDEHAAVGAGRLAIDGGNGVLALLEGEASELGDDILRALDLLTFKRQH 60
           +L+ +  + + DEDEHAA+   RLA+DG + V+AL EGE +EL  D   A  LL  + +H
Sbjct: 38  VLVGAGAEGSGDEDEHAALRPRRLAVDGVDVVVALREGEGAELAGDGGGAEKLLALEGEH 97

Query: 61  GIVLVEIRKTGSIGVEGGVIMFNECLRHRVGIH 94
           G VLV+  +   + VE  V++ +E LRHRV +H
Sbjct: 98  GPVLVQRHQRRPVRVERPVVVLHERLRHRVRVH 130

BLAST of MS026741 vs. ExPASy TrEMBL
Match: A0A7S3HPT7 (Hypothetical protein (Fragment) OS=Spumella elongata OX=89044 GN=SELO1098_LOCUS30567 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 4.6e-07
Identity = 40/89 (44.94%), Postives = 57/89 (64.04%), Query Frame = 0

Query: 8  KIAADEDEHAAVGAGRLAIDGGNGVLALLEGEASELGDDILRALDLLTFKRQHGIVLVEI 67
          +IA DED+ A +G   +AI   + VL LLEG+ S+L  D+LRAL LLT + +HG++ V+ 
Sbjct: 9  QIACDEDDDAILGGIGMAITLDDLVLDLLEGQRSQLLRDVLRALKLLTLECEHGLLAVQR 68

Query: 68 RKTGSIGVEGGVIMFNECL------RHRV 91
          R+   +GVEG VI+  + L      RHRV
Sbjct: 69 RQGRPVGVEGPVIVLAKLLANLLEFRHRV 97

BLAST of MS026741 vs. ExPASy TrEMBL
Match: A0A0P0V925 (Os01g0788001 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0788001 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 6.0e-07
Identity = 37/93 (39.78%), Postives = 60/93 (64.52%), Query Frame = 0

Query: 1   MLLSSKLKIAADEDEHAA-VGAGRLAIDGGNGVLALLEGEASELGDDILRALDLLTFKRQ 60
           +LL+ +L++A DEDE A+  G   LA+DG +GV ALLEG+  +L  D+L A   ++ + +
Sbjct: 30  VLLAGELEVATDEDEDASREGRRGLAVDGADGVPALLEGQPQQLPADLLGAGHHVSLEGE 89

Query: 61  HGIVLVEIRKTGSIGVEGGVIMFNECLRHRVGI 93
           HG + VE  + G++GVE  V++ +E   H V +
Sbjct: 90  HGRLAVERGERGAVGVERLVVVLHEGPGHHVAL 122

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAF2611779.11.1e-1850.48hypothetical protein F2Q70_00012608 [Brassica cretica][more]
RYR16994.13.5e-1754.44hypothetical protein Ahy_B03g061810 isoform B [Arachis hypogaea][more]
XP_020202557.12.9e-1656.79uncharacterized protein LOC109788280 [Cajanus cajan][more]
XP_020202559.12.9e-1656.79uncharacterized protein LOC109788282 [Cajanus cajan][more]
KAF3509038.12.6e-1257.89hypothetical protein F2Q69_00008085 [Brassica cretica][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1J3EJ411.1e-1952.00Uncharacterized protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=LC_TR969... [more]
A0A444ZSB91.7e-1754.44Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B03g061810 PE=4 SV=1[more]
A0A0P0XIR81.4e-0843.01Os08g0532350 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0532350 PE... [more]
A0A7S3HPT74.6e-0744.94Hypothetical protein (Fragment) OS=Spumella elongata OX=89044 GN=SELO1098_LOCUS3... [more]
A0A0P0V9256.0e-0739.78Os01g0788001 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os01... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS026741.1MS026741.1mRNA