MS026674 (gene) Bitter gourd (TR) v1

Overview


Name	MS026674
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Enzymatic polyprotein
Location	scaffold977: 174317 .. 174784 (+)
RNA-Seq Expression	MS026674
Synteny	MS026674

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGAGCGTCAGTAGATTTCACTCATCCTATCCCTGACGTTCATTATGAAGAAGGATCACTCTCTCCTACTCAGTCCGACATGGAAAGGAGAACTGAACCTACTTTCAACCAAATAAACATAATCTCAAAACCCGAGAAACGTTATGAAGAACTATACGGCAAATACATCGATATGTGGATTGCCGCCCCAAAAGAAACGAGGAAACCTGTCATGAGTATTGGCGATTTCACTTCAAAAATACAACAAAGAGAGCTAGCCAGGAACGAACCTCTAGTTGAAAAGCTCCAAGCCCAAGGACAGGTAGCAGTCATTAAAAATGGCACTGTTTGGGTCACGGCAAGAGGCAAAGAGATACCTGCCATAAAGATGGTGTCTTCACCGTGTTCGAGATATTAAGAACATCCAGCATCAACTTAATTACTCAAACAAGATTCTTTCGGAAGTCTCTAGAGCTGTTAATATTAG

mRNA sequence

ATGCGAGCGTCAGTAGATTTCACTCATCCTATCCCTGACGTTCATTATGAAGAAGGATCACTCTCTCCTACTCAGTCCGACATGGAAAGGAGAACTGAACCTACTTTCAACCAAATAAACATAATCTCAAAACCCGAGAAACGTTATGAAGAACTATACGGCAAATACATCGATATGTGGATTGCCGCCCCAAAAGAAACGAGGAAACCTGTCATGAGTATTGGCGATTTCACTTCAAAAATACAACAAAGAGAGCTAGCCAGGAACGAACCTCTAGTTGAAAAGCTCCAAGCCCAAGGACAGGTAGCAGTCATTAAAAATGGCACTGTTTGGGTCACGGCAAGAGGCAAAGAGATACCTGCCATAAAGATGGTGTCTTCACCGTGTTCGAGATATTAAGAACATCCAGCATCAACTTAATTACTCAAACAAGATTCTTTCGGAAGTCTCTAGAGCTGTTAATATTAG

Coding sequence (CDS)

ATGCGAGCGTCAGTAGATTTCACTCATCCTATCCCTGACGTTCATTATGAAGAAGGATCACTCTCTCCTACTCAGTCCGACATGGAAAGGAGAACTGAACCTACTTTCAACCAAATAAACATAATCTCAAAACCCGAGAAACGTTATGAAGAACTATACGGCAAATACATCGATATGTGGATTGCCGCCCCAAAAGAAACGAGGAAACCTGTCATGAGTATTGGCGATTTCACTTCAAAAATACAACAAAGAGAGCTAGCCAGGAACGAACCTCTAGTTGAAAAGCTCCAAGCCCAAGGACAGGTAGCAGTCATTAAAAATGGCACTGTTTGGGTCACGGCAAGAGGCAAAGAGATACCTGCCATAAAGATGGTGTCTTCACCGTGTTCGAGATATTAAGAACATCCAGCATCAACTTAATTACTCAAACAAGATTCTTTCGGAAGTCTCTAGAGCTGTTAATATTAG

Protein sequence

MRASVDFTHPIPDVHYEEGSLSPTQSDMERRTEPTFNQINIISKPEKRYEELYGKYIDMWIAAPKETRKPVMSIGDFTSKIQQRELARNEPLVEKLQAQGQVAVIKNGTVWVTARGKEIPAIKMVSSPCSRYUEHPASTULLKQDSFGSLUSCUY

Homology

[Close]

BLAST of MS026674 vs. NCBI nr
Match: KAA0059217.1 (Enzymatic polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 162.5 bits (410), Expect = 2.8e-36
Identity = 86/147 (58.50%), Postives = 103/147 (70.07%), Query Frame = 0


Query: 1   MRASVDFTHPIPDVHY--EEGSLSPTQSDMERRTEPTFNQINIISKPEKRYEELYGKYID 60
           +RASVDF+H IPDVHY  E+GSLSPTQSDMERR+EP +NQIN+IS  ++R+ E Y  YID
Sbjct: 335 IRASVDFSHTIPDVHYEKEDGSLSPTQSDMERRSEPVYNQINVISNDKERFREHYSVYID 394

Query: 61  MWIAAPKETRKPVMSIGDFTSKIQQRELARNEPLVEKLQAQGQVAVIKNGTVWVTARGKE 120
            WI AP ETRKP +++ DF   + + E A+NE L +KLQA GQVA+IK  TVWVTA GKE
Sbjct: 395 QWIKAPAETRKPFLTMPDFVEGMLKVERAKNEALAKKLQADGQVAMIKGSTVWVTASGKE 454

Query: 121 -----------------IPAIKMVSSP 129
                            IPAIKMVSSP
Sbjct: 455 VASNYPPEEEAYFSHPTIPAIKMVSSP 481

[Close]

BLAST of MS026674 vs. NCBI nr
Match: TYJ97599.1 (Enzymatic polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 162.5 bits (410), Expect = 2.8e-36
Identity = 86/147 (58.50%), Postives = 103/147 (70.07%), Query Frame = 0


Query: 1   MRASVDFTHPIPDVHY--EEGSLSPTQSDMERRTEPTFNQINIISKPEKRYEELYGKYID 60
           +RASVDF+H IPDVHY  E+GSLSPTQSDMERR+EP +NQIN+IS  ++R+ E Y  YID
Sbjct: 335 IRASVDFSHTIPDVHYEKEDGSLSPTQSDMERRSEPVYNQINVISNDKERFREHYSVYID 394

Query: 61  MWIAAPKETRKPVMSIGDFTSKIQQRELARNEPLVEKLQAQGQVAVIKNGTVWVTARGKE 120
            WI AP ETRKP +++ DF   + + E A+NE L +KLQA GQVA+IK  TVWVTA GKE
Sbjct: 395 QWIKAPAETRKPFLTMPDFVEGMLKVERAKNEALAKKLQADGQVAMIKGSTVWVTASGKE 454

Query: 121 -----------------IPAIKMVSSP 129
                            IPAIKMVSSP
Sbjct: 455 VASNYPPEEEAYFSHPTIPAIKMVSSP 481

[Close]

BLAST of MS026674 vs. NCBI nr
Match: KAA0056776.1 (Enzymatic polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 162.2 bits (409), Expect = 3.7e-36
Identity = 85/147 (57.82%), Postives = 103/147 (70.07%), Query Frame = 0


Query: 1   MRASVDFTHPIPDVHY--EEGSLSPTQSDMERRTEPTFNQINIISKPEKRYEELYGKYID 60
           +RASVDF+H IPD+HY  E+GSLSPTQSDMERR+EP +NQIN+IS  ++R+ E Y  YID
Sbjct: 335 IRASVDFSHTIPDIHYEKEDGSLSPTQSDMERRSEPVYNQINVISNDKERFREHYSVYID 394

Query: 61  MWIAAPKETRKPVMSIGDFTSKIQQRELARNEPLVEKLQAQGQVAVIKNGTVWVTARGKE 120
            WI AP ETRKP +++ DF   + + E A+NE L +KLQA GQVA+IK  TVWVTA GKE
Sbjct: 395 QWIKAPAETRKPFLTMPDFVEGMLKVERAKNEALAKKLQADGQVAMIKGSTVWVTASGKE 454

Query: 121 -----------------IPAIKMVSSP 129
                            IPAIKMVSSP
Sbjct: 455 VASNYPPEEEAYFSHPTIPAIKMVSSP 481

[Close]

BLAST of MS026674 vs. NCBI nr
Match: TYK01213.1 (Enzymatic polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 161.4 bits (407), Expect = 6.3e-36
Identity = 86/156 (55.13%), Postives = 109/156 (69.87%), Query Frame = 0


Query: 1   MRASVDFTHPIPDVHY--EEGSLSPTQSDMERRTEPTFNQINIISKPE--KRYEELYGKY 60
           +RAS+DF+  IP VHY  E+ SLSPTQSDMERRTEP +NQIN+IS  E   R++E Y KY
Sbjct: 333 IRASMDFSRSIPTVHYKKEDESLSPTQSDMERRTEPVYNQINVISSNEDNDRFQEYYSKY 392

Query: 61  IDMWIAAPKETRKPVMSIGDFTSKIQQRELARNEPLVEKLQAQGQVAVIKNGTVWVTARG 120
           +DMW+AAP ETRKP + + DF + ++Q+E A+NE LV++L+A GQVA+IK  TVWVTA+G
Sbjct: 393 LDMWLAAPAETRKPFLPMPDFIAGLKQKEKAKNEALVKRLEADGQVAMIKGSTVWVTAKG 452

Query: 121 KE-----------------IPAIKMVSSPCSRYXEH 136
           KE                 IPAIKMVSSP     E+
Sbjct: 453 KEIASNYPPEGEAYFAHPIIPAIKMVSSPYKTIDEN 488

[Close]

BLAST of MS026674 vs. NCBI nr
Match: KAA0066201.1 (Enzymatic polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 161.4 bits (407), Expect = 6.3e-36
Identity = 86/156 (55.13%), Postives = 109/156 (69.87%), Query Frame = 0


Query: 1   MRASVDFTHPIPDVHY--EEGSLSPTQSDMERRTEPTFNQINIISKPE--KRYEELYGKY 60
           +RAS+DF+  IP VHY  E+ SLSPTQSDMERRTEP +NQIN+IS  E   R++E Y KY
Sbjct: 333 IRASMDFSRSIPTVHYKKEDESLSPTQSDMERRTEPVYNQINVISSNEDNDRFQEYYSKY 392

Query: 61  IDMWIAAPKETRKPVMSIGDFTSKIQQRELARNEPLVEKLQAQGQVAVIKNGTVWVTARG 120
           +DMW+AAP ETRKP + + DF + ++Q+E A+NE LV++L+A GQVA+IK  TVWVTA+G
Sbjct: 393 LDMWLAAPAETRKPFLPMPDFIAGLKQKEKAKNEALVKRLEADGQVAMIKGSTVWVTAKG 452

Query: 121 KE-----------------IPAIKMVSSPCSRYXEH 136
           KE                 IPAIKMVSSP     E+
Sbjct: 453 KEIASNYPPEGEAYFAHPIIPAIKMVSSPYKTIDEN 488

[Close]

BLAST of MS026674 vs. ExPASy TrEMBL
Match: A0A5D3BEY3 (Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold690G00300 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 1.4e-36
Identity = 86/147 (58.50%), Postives = 103/147 (70.07%), Query Frame = 0


Query: 1   MRASVDFTHPIPDVHY--EEGSLSPTQSDMERRTEPTFNQINIISKPEKRYEELYGKYID 60
           +RASVDF+H IPDVHY  E+GSLSPTQSDMERR+EP +NQIN+IS  ++R+ E Y  YID
Sbjct: 335 IRASVDFSHTIPDVHYEKEDGSLSPTQSDMERRSEPVYNQINVISNDKERFREHYSVYID 394

Query: 61  MWIAAPKETRKPVMSIGDFTSKIQQRELARNEPLVEKLQAQGQVAVIKNGTVWVTARGKE 120
            WI AP ETRKP +++ DF   + + E A+NE L +KLQA GQVA+IK  TVWVTA GKE
Sbjct: 395 QWIKAPAETRKPFLTMPDFVEGMLKVERAKNEALAKKLQADGQVAMIKGSTVWVTASGKE 454

Query: 121 -----------------IPAIKMVSSP 129
                            IPAIKMVSSP
Sbjct: 455 VASNYPPEEEAYFSHPTIPAIKMVSSP 481

[Close]

BLAST of MS026674 vs. ExPASy TrEMBL
Match: A0A5A7UX67 (Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001460 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 1.4e-36
Identity = 86/147 (58.50%), Postives = 103/147 (70.07%), Query Frame = 0


Query: 1   MRASVDFTHPIPDVHY--EEGSLSPTQSDMERRTEPTFNQINIISKPEKRYEELYGKYID 60
           +RASVDF+H IPDVHY  E+GSLSPTQSDMERR+EP +NQIN+IS  ++R+ E Y  YID
Sbjct: 335 IRASVDFSHTIPDVHYEKEDGSLSPTQSDMERRSEPVYNQINVISNDKERFREHYSVYID 394

Query: 61  MWIAAPKETRKPVMSIGDFTSKIQQRELARNEPLVEKLQAQGQVAVIKNGTVWVTARGKE 120
            WI AP ETRKP +++ DF   + + E A+NE L +KLQA GQVA+IK  TVWVTA GKE
Sbjct: 395 QWIKAPAETRKPFLTMPDFVEGMLKVERAKNEALAKKLQADGQVAMIKGSTVWVTASGKE 454

Query: 121 -----------------IPAIKMVSSP 129
                            IPAIKMVSSP
Sbjct: 455 VASNYPPEEEAYFSHPTIPAIKMVSSP 481

[Close]

BLAST of MS026674 vs. ExPASy TrEMBL
Match: A0A5A7UR29 (Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold486G00660 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.8e-36
Identity = 85/147 (57.82%), Postives = 103/147 (70.07%), Query Frame = 0


Query: 1   MRASVDFTHPIPDVHY--EEGSLSPTQSDMERRTEPTFNQINIISKPEKRYEELYGKYID 60
           +RASVDF+H IPD+HY  E+GSLSPTQSDMERR+EP +NQIN+IS  ++R+ E Y  YID
Sbjct: 335 IRASVDFSHTIPDIHYEKEDGSLSPTQSDMERRSEPVYNQINVISNDKERFREHYSVYID 394

Query: 61  MWIAAPKETRKPVMSIGDFTSKIQQRELARNEPLVEKLQAQGQVAVIKNGTVWVTARGKE 120
            WI AP ETRKP +++ DF   + + E A+NE L +KLQA GQVA+IK  TVWVTA GKE
Sbjct: 395 QWIKAPAETRKPFLTMPDFVEGMLKVERAKNEALAKKLQADGQVAMIKGSTVWVTASGKE 454

Query: 121 -----------------IPAIKMVSSP 129
                            IPAIKMVSSP
Sbjct: 455 VASNYPPEEEAYFSHPTIPAIKMVSSP 481

[Close]

BLAST of MS026674 vs. ExPASy TrEMBL
Match: A0A5A7VKK8 (Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G002180 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 3.1e-36
Identity = 86/156 (55.13%), Postives = 109/156 (69.87%), Query Frame = 0


Query: 1   MRASVDFTHPIPDVHY--EEGSLSPTQSDMERRTEPTFNQINIISKPE--KRYEELYGKY 60
           +RAS+DF+  IP VHY  E+ SLSPTQSDMERRTEP +NQIN+IS  E   R++E Y KY
Sbjct: 333 IRASMDFSRSIPTVHYKKEDESLSPTQSDMERRTEPVYNQINVISSNEDNDRFQEYYSKY 392

Query: 61  IDMWIAAPKETRKPVMSIGDFTSKIQQRELARNEPLVEKLQAQGQVAVIKNGTVWVTARG 120
           +DMW+AAP ETRKP + + DF + ++Q+E A+NE LV++L+A GQVA+IK  TVWVTA+G
Sbjct: 393 LDMWLAAPAETRKPFLPMPDFIAGLKQKEKAKNEALVKRLEADGQVAMIKGSTVWVTAKG 452

Query: 121 KE-----------------IPAIKMVSSPCSRYXEH 136
           KE                 IPAIKMVSSP     E+
Sbjct: 453 KEIASNYPPEGEAYFAHPIIPAIKMVSSPYKTIDEN 488

[Close]

BLAST of MS026674 vs. ExPASy TrEMBL
Match: A0A5D3BN76 (Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold75441G00050 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 3.1e-36
Identity = 86/156 (55.13%), Postives = 109/156 (69.87%), Query Frame = 0


Query: 1   MRASVDFTHPIPDVHY--EEGSLSPTQSDMERRTEPTFNQINIISKPE--KRYEELYGKY 60
           +RAS+DF+  IP VHY  E+ SLSPTQSDMERRTEP +NQIN+IS  E   R++E Y KY
Sbjct: 333 IRASMDFSRSIPTVHYKKEDESLSPTQSDMERRTEPVYNQINVISSNEDNDRFQEYYSKY 392

Query: 61  IDMWIAAPKETRKPVMSIGDFTSKIQQRELARNEPLVEKLQAQGQVAVIKNGTVWVTARG 120
           +DMW+AAP ETRKP + + DF + ++Q+E A+NE LV++L+A GQVA+IK  TVWVTA+G
Sbjct: 393 LDMWLAAPAETRKPFLPMPDFIAGLKQKEKAKNEALVKRLEADGQVAMIKGSTVWVTAKG 452

Query: 121 KE-----------------IPAIKMVSSPCSRYXEH 136
           KE                 IPAIKMVSSP     E+
Sbjct: 453 KEIASNYPPEGEAYFAHPIIPAIKMVSSPYKTIDEN 488

The following BLAST results are available for this feature:

BLAST of MS026674 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0059217.1	2.8e-36	58.50	Enzymatic polyprotein [Cucumis melo var. makuwa]	[more]
TYJ97599.1	2.8e-36	58.50	Enzymatic polyprotein [Cucumis melo var. makuwa]	[more]
KAA0056776.1	3.7e-36	57.82	Enzymatic polyprotein [Cucumis melo var. makuwa]	[more]
TYK01213.1	6.3e-36	55.13	Enzymatic polyprotein [Cucumis melo var. makuwa]	[more]
KAA0066201.1	6.3e-36	55.13	Enzymatic polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of MS026674 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS026674 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BEY3	1.4e-36	58.50	Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold69...	[more]
A0A5A7UX67	1.4e-36	58.50	Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43...	[more]
A0A5A7UR29	1.8e-36	57.82	Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold48...	[more]
A0A5A7VKK8	3.1e-36	55.13	Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21...	[more]
A0A5D3BN76	3.1e-36	55.13	Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold75...	[more]

BLAST of MS026674 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS026674.1	MS026674.1	mRNA