MS026580 (gene) Bitter gourd (TR) v1

Overview
NameMS026580
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold553: 1088091 .. 1088438 (+)
RNA-Seq ExpressionMS026580
SyntenyMS026580
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGACATTCTTCAATCACGGGAGCTGCAATGGCAGTGGCAGTTCTGATGATGATGCTGAGCACAAGCCACTGCAACGCTGCATCTCTGACTTCTTCGAATTTCCACAACGAGACCACCGTCGGATCGATATGGTGCGGTGGCCGGGCCGAGGAATGCCTGGCCGGAGAATACGAATTGGACATTCAGATGGCAATTTCATACCCTCCGAAATACGCTTCTTCACGGGTCGTAAAGCCGCAGAAACCTATATGTGATCGCCCAAATTCACCGTATGACTGTCTTGGCCCGCCCAACCCGGGACCTGGTTGTAGACGCCGCAACATCTTTGACCGCACAATCTGTTAG

mRNA sequence

ATGGGACATTCTTCAATCACGGGAGCTGCAATGGCAGTGGCAGTTCTGATGATGATGCTGAGCACAAGCCACTGCAACGCTGCATCTCTGACTTCTTCGAATTTCCACAACGAGACCACCGTCGGATCGATATGGTGCGGTGGCCGGGCCGAGGAATGCCTGGCCGGAGAATACGAATTGGACATTCAGATGGCAATTTCATACCCTCCGAAATACGCTTCTTCACGGGTCGTAAAGCCGCAGAAACCTATATGTGATCGCCCAAATTCACCGTATGACTGTCTTGGCCCGCCCAACCCGGGACCTGGTTGTAGACGCCGCAACATCTTTGACCGCACAATCTGTTAG

Coding sequence (CDS)

ATGGGACATTCTTCAATCACGGGAGCTGCAATGGCAGTGGCAGTTCTGATGATGATGCTGAGCACAAGCCACTGCAACGCTGCATCTCTGACTTCTTCGAATTTCCACAACGAGACCACCGTCGGATCGATATGGTGCGGTGGCCGGGCCGAGGAATGCCTGGCCGGAGAATACGAATTGGACATTCAGATGGCAATTTCATACCCTCCGAAATACGCTTCTTCACGGGTCGTAAAGCCGCAGAAACCTATATGTGATCGCCCAAATTCACCGTATGACTGTCTTGGCCCGCCCAACCCGGGACCTGGTTGTAGACGCCGCAACATCTTTGACCGCACAATCTGTTAG

Protein sequence

MGHSSITGAAMAVAVLMMMLSTSHCNAASLTSSNFHNETTVGSIWCGGRAEECLAGEYELDIQMAISYPPKYASSRVVKPQKPICDRPNSPYDCLGPPNPGPGCRRRNIFDRTIC
Homology
BLAST of MS026580 vs. NCBI nr
Match: KAG6607070.1 (hypothetical protein SDJN03_00412, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 65.9 bits (159), Expect = 2.7e-07
Identity = 42/104 (40.38%), Postives = 55/104 (52.88%), Query Frame = 0

Query: 1   MGHSSITGAAMAVA------VLMMMLSTSHCNAASLTSSNFHNET--TVGSIWCGGRAEE 60
           MGHSS +GA MA A      V ++MLS SHC+ AS T S++ N T     S+WC GR EE
Sbjct: 1   MGHSSNSGAVMAAAAAAAMGVFILMLSGSHCSVASPTPSSYGNITVAAAASMWCDGRVEE 60

Query: 61  CLAGE--YELDIQMAISYPPKYASSRVVKPQKPICDRPNSPYDC 95
           C+  E   E      ++  PK+ S       KP+C+RP     C
Sbjct: 61  CVTREDDGESAFPSLLASTPKFISFPTRNRNKPVCERPGDYKSC 104

BLAST of MS026580 vs. NCBI nr
Match: KAG6607071.1 (hypothetical protein SDJN03_00413, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 64.7 bits (156), Expect = 6.0e-07
Identity = 45/115 (39.13%), Postives = 59/115 (51.30%), Query Frame = 0

Query: 1   MGHSSITGAAMAVA---VLMMMLSTSHCNAASLTSSNFHNET--TVGSIWCGGRAEECLA 60
           MGHSS +G  MA A   V +++LS S CN AS T S++ N T     S+WC GR EEC+ 
Sbjct: 1   MGHSSNSGGVMAAAAMGVFILVLSGSDCNVASPTPSSYGNNTVAAAASMWCDGRVEECVT 60

Query: 61  GEYELDIQMAISYPP------KYASSRVVKPQKPICDRPNSPYDCLGP--PNPGP 103
            E +     A ++P       KY S   V   K +C+RP+    C  P   NP P
Sbjct: 61  REGD----SASAFPSLQTSTRKYISPSSVNSNKAVCERPDEYRSCFNPRRSNPNP 111

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6607070.12.7e-0740.38hypothetical protein SDJN03_00412, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6607071.16.0e-0739.13hypothetical protein SDJN03_00413, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS026580.1MS026580.1mRNA