MS026503 (gene) Bitter gourd (TR) v1

Overview
NameMS026503
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionEarly nodulin-75-like
Locationscaffold607: 1550862 .. 1551164 (+)
RNA-Seq ExpressionMS026503
SyntenyMS026503
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCCATATGGTTATAATTATGGCTATGGATATTATCCATATCCTGATCAAGGATATCCTAAGTACCACCAAGATGTTCCTCCTTATGGATACACTTATAACTATCACGGATACATGCACAATCCTTATCCTTATCAAGGATATCCTTATTATGTTGCTGCTGCAGCCCCTCCTGCTCCTGCATATTATCATCAGCAACAAAACTATGGCTCGAACTCGGGCGGGATTCTGTCGTCGATGCTATCTTCTGTGGTTGGGAATATGGGGGCTGGCTTCATCTCTTCTCTTCTGTTTAGCTAA

mRNA sequence

ATGAATCCATATGGTTATAATTATGGCTATGGATATTATCCATATCCTGATCAAGGATATCCTAAGTACCACCAAGATGTTCCTCCTTATGGATACACTTATAACTATCACGGATACATGCACAATCCTTATCCTTATCAAGGATATCCTTATTATGTTGCTGCTGCAGCCCCTCCTGCTCCTGCATATTATCATCAGCAACAAAACTATGGCTCGAACTCGGGCGGGATTCTGTCGTCGATGCTATCTTCTGTGGTTGGGAATATGGGGGCTGGCTTCATCTCTTCTCTTCTGTTTAGCTAA

Coding sequence (CDS)

ATGAATCCATATGGTTATAATTATGGCTATGGATATTATCCATATCCTGATCAAGGATATCCTAAGTACCACCAAGATGTTCCTCCTTATGGATACACTTATAACTATCACGGATACATGCACAATCCTTATCCTTATCAAGGATATCCTTATTATGTTGCTGCTGCAGCCCCTCCTGCTCCTGCATATTATCATCAGCAACAAAACTATGGCTCGAACTCGGGCGGGATTCTGTCGTCGATGCTATCTTCTGTGGTTGGGAATATGGGGGCTGGCTTCATCTCTTCTCTTCTGTTTAGCTAA

Protein sequence

MNPYGYNYGYGYYPYPDQGYPKYHQDVPPYGYTYNYHGYMHNPYPYQGYPYYVAAAAPPAPAYYHQQQNYGSNSGGILSSMLSSVVGNMGAGFISSLLFS
Homology
BLAST of MS026503 vs. NCBI nr
Match: KAA0045171.1 (early nodulin-75-like [Cucumis melo var. makuwa] >TYK23567.1 early nodulin-75-like [Cucumis melo var. makuwa])

HSP 1 Score: 68.6 bits (166), Expect = 3.6e-08
Identity = 62/109 (56.88%), Postives = 69/109 (63.30%), Query Frame = 0

Query: 2   NPYG-YNYGYGYYPYPDQGYPKYH-QDVPP---YGYTY-NY-HGYMHNPYPYQGYPY-YV 61
           NPYG Y+YG   YPYP QGYPKY  Q VPP   YG  Y NY HG++H PYP   Y Y Y 
Sbjct: 3   NPYGCYSYG---YPYPHQGYPKYQGQGVPPNYKYGAGYINYGHGHVH-PYPCYDYSYPYP 62

Query: 62  AAAAPPAPAYYHQQQNYGSN-SGGILSSMLSSVVGNMG-AGFISSLLFS 101
             +    P  Y+ QQNYG+N + GIL SMLSSV GN   A FISSL FS
Sbjct: 63  PPSTTLIPPQYNYQQNYGTNITEGILPSMLSSVSGNGSIASFISSLFFS 107

BLAST of MS026503 vs. NCBI nr
Match: KAE8649545.1 (hypothetical protein Csa_017919 [Cucumis sativus])

HSP 1 Score: 63.9 bits (154), Expect = 8.9e-07
Identity = 54/104 (51.92%), Postives = 61/104 (58.65%), Query Frame = 0

Query: 2  NPYGYNYGYGYYPYPDQGYPKYH-QDVPP-----YGYTYNYHGYMH------NPYPYQGY 61
          NPYG+ Y YG YPYP QGYPKY  Q VPP      GYT   HG++H        Y YQ Y
Sbjct: 3  NPYGH-YSYG-YPYPHQGYPKYQGQGVPPNHNYGAGYTNYQHGHVHPYSCYDYSYLYQAY 62

Query: 62 PYYVAAAAPPA----PAYYHQQQNYGSN-SGGILSSMLSSVVGN 89
          PY      PP+    P  Y+ QQNY +N  GGIL+SMLSSV GN
Sbjct: 63 PY-----PPPSTTLIPPQYNYQQNYDTNIKGGILASMLSSVSGN 99

BLAST of MS026503 vs. ExPASy TrEMBL
Match: A0A5A7TUH5 (Early nodulin-75-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00750 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.7e-08
Identity = 62/109 (56.88%), Postives = 69/109 (63.30%), Query Frame = 0

Query: 2   NPYG-YNYGYGYYPYPDQGYPKYH-QDVPP---YGYTY-NY-HGYMHNPYPYQGYPY-YV 61
           NPYG Y+YG   YPYP QGYPKY  Q VPP   YG  Y NY HG++H PYP   Y Y Y 
Sbjct: 3   NPYGCYSYG---YPYPHQGYPKYQGQGVPPNYKYGAGYINYGHGHVH-PYPCYDYSYPYP 62

Query: 62  AAAAPPAPAYYHQQQNYGSN-SGGILSSMLSSVVGNMG-AGFISSLLFS 101
             +    P  Y+ QQNYG+N + GIL SMLSSV GN   A FISSL FS
Sbjct: 63  PPSTTLIPPQYNYQQNYGTNITEGILPSMLSSVSGNGSIASFISSLFFS 107

BLAST of MS026503 vs. ExPASy TrEMBL
Match: A0A0A0KZN9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G296860 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.3e-08
Identity = 60/117 (51.28%), Postives = 69/117 (58.97%), Query Frame = 0

Query: 2   NPYGYNYGYGYYPYPDQGYPKYH-QDVPP-----YGYTYNYHGYMH------NPYPYQGY 61
           NPYG+ Y YG YPYP QGYPKY  Q VPP      GYT   HG++H        Y YQ Y
Sbjct: 3   NPYGH-YSYG-YPYPHQGYPKYQGQGVPPNHNYGAGYTNYQHGHVHPYSCYDYSYLYQAY 62

Query: 62  PYYVAAAAPPA----PAYYHQQQNYGSN-SGGILSSMLSSVVGNMG-AGFISSLLFS 101
           PY      PP+    P  Y+ QQNY +N  GGIL+SMLSSV GN   A F+SSL F+
Sbjct: 63  PY-----PPPSTTLIPPQYNYQQNYDTNIKGGILASMLSSVSGNGSIASFVSSLFFN 112

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0045171.13.6e-0856.88early nodulin-75-like [Cucumis melo var. makuwa] >TYK23567.1 early nodulin-75-li... [more]
KAE8649545.18.9e-0751.92hypothetical protein Csa_017919 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TUH51.7e-0856.88Early nodulin-75-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold50... [more]
A0A0A0KZN92.3e-0851.28Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G296860 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS026503.1MS026503.1mRNA