MS026293 (gene) Bitter gourd (TR) v1

Overview
NameMS026293
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionGlyco_trans_4-like_N domain-containing protein
Locationscaffold63: 4104808 .. 4105155 (+)
RNA-Seq ExpressionMS026293
SyntenyMS026293
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACACAACCGCCTCGCCATGGCCGGAGCTTCCGTGCGAATCGTACACCACCGCCGCCAGCATGCCGTACAGCAGCGATCCGATCGGAATGTTTGTGATCAGAATATTGTGGTTCACGCCTAAGCTGTTCGGCCCGAAGAGCTCCGCTGTTATGGAAACTGCGGCGGCGAATATGAAGCCGGAGCTCATACCGACCAGCGCCGTGCCTATGTACACGGTCACCGTGGTGGACGACGCCGCTAACAGGAAGAATGCTATTGGAGTTGGAATTAGCGCAATCGACAGCCATCCTGTTCTTGCGAAGTACAGTTTCCTGCAGAAGAAAAATTGGCGGTGTTTGTGTTAG

mRNA sequence

ATGCACACAACCGCCTCGCCATGGCCGGAGCTTCCGTGCGAATCGTACACCACCGCCGCCAGCATGCCGTACAGCAGCGATCCGATCGGAATGTTTGTGATCAGAATATTGTGGTTCACGCCTAAGCTGTTCGGCCCGAAGAGCTCCGCTGTTATGGAAACTGCGGCGGCGAATATGAAGCCGGAGCTCATACCGACCAGCGCCGTGCCTATGTACACGGTCACCGTGGTGGACGACGCCGCTAACAGGAAGAATGCTATTGGAGTTGGAATTAGCGCAATCGACAGCCATCCTGTTCTTGCGAAGTACAGTTTCCTGCAGAAGAAAAATTGGCGGTGTTTGTGTTAG

Coding sequence (CDS)

ATGCACACAACCGCCTCGCCATGGCCGGAGCTTCCGTGCGAATCGTACACCACCGCCGCCAGCATGCCGTACAGCAGCGATCCGATCGGAATGTTTGTGATCAGAATATTGTGGTTCACGCCTAAGCTGTTCGGCCCGAAGAGCTCCGCTGTTATGGAAACTGCGGCGGCGAATATGAAGCCGGAGCTCATACCGACCAGCGCCGTGCCTATGTACACGGTCACCGTGGTGGACGACGCCGCTAACAGGAAGAATGCTATTGGAGTTGGAATTAGCGCAATCGACAGCCATCCTGTTCTTGCGAAGTACAGTTTCCTGCAGAAGAAAAATTGGCGGTGTTTGTGTTAG

Protein sequence

MHTTASPWPELPCESYTTAASMPYSSDPIGMFVIRILWFTPKLFGPKSSAVMETAAANMKPELIPTSAVPMYTVTVVDDAANRKNAIGVGISAIDSHPVLAKYSFLQKKNWRCLC
Homology
BLAST of MS026293 vs. NCBI nr
Match: PON56672.1 (hypothetical protein PanWU01x14_178900 [Parasponia andersonii])

HSP 1 Score: 112.5 bits (280), Expect = 2.5e-21
Identity = 56/91 (61.54%), Postives = 64/91 (70.33%), Query Frame = 0

Query: 12  PCESYTTAASMPYSSDPIGMFVIRILWFTPKLFGPKSSAVMETAAANMKPELIPTSAVPM 71
           P ESYTTAAS PY SDPIGMFV+R+LW TP LF PKSS V++TAA N  PEL P  AVPM
Sbjct: 17  PFESYTTAASRPYRSDPIGMFVMRMLWLTPALFAPKSSDVIDTAAENTNPELTPIKAVPM 76

Query: 72  YTVTVVDDAANRKNAIGVGISAIDSHPVLAK 103
                + D A++  AIG G  A+ SHPVL K
Sbjct: 77  RNTASLPDIASKNKAIGAGTIAMASHPVLGK 107

BLAST of MS026293 vs. NCBI nr
Match: PON87479.1 (hypothetical protein TorRG33x02_166570 [Trema orientale])

HSP 1 Score: 109.8 bits (273), Expect = 1.6e-20
Identity = 55/91 (60.44%), Postives = 63/91 (69.23%), Query Frame = 0

Query: 12  PCESYTTAASMPYSSDPIGMFVIRILWFTPKLFGPKSSAVMETAAANMKPELIPTSAVPM 71
           P ESYTTAAS PY SDPIGM V+R+LW  P LF PKSS V++TAA N  PEL P  AVPM
Sbjct: 17  PFESYTTAASRPYRSDPIGMLVMRMLWLIPALFAPKSSDVIDTAAENTNPELTPIKAVPM 76

Query: 72  YTVTVVDDAANRKNAIGVGISAIDSHPVLAK 103
                + D A++K AIG G  A+ SHPVL K
Sbjct: 77  RNTASLPDIASKKKAIGAGTIAMASHPVLGK 107

BLAST of MS026293 vs. NCBI nr
Match: KAB8116295.1 (hypothetical protein EE612_057325 [Oryza sativa] >BAT15505.1 Os12g0106525 [Oryza sativa Japonica Group])

HSP 1 Score: 82.8 bits (203), Expect = 2.1e-12
Identity = 45/76 (59.21%), Postives = 52/76 (68.42%), Query Frame = 0

Query: 31  MFVIRILWFTPKLFGPKSSAVMETAAANMKPELIPTSAVPMYTVTVVDDAANRKNAIGVG 90
           M V+R+LWF P LFGPKSS V +TAAA MKPEL P SAVP   V    +   RKNAIG+G
Sbjct: 1   MLVMRMLWFMPMLFGPKSSEVTDTAAAKMKPELRPISAVPATRVFTSCNFHIRKNAIGMG 60

Query: 91  ISAIDSHPVLAKYSFL 107
            +A  SHPV A  +FL
Sbjct: 61  TNAAASHPVRANETFL 76

BLAST of MS026293 vs. NCBI nr
Match: KAF2586189.1 (hypothetical protein F2Q70_00034653 [Brassica cretica])

HSP 1 Score: 76.6 bits (187), Expect = 1.5e-10
Identity = 40/60 (66.67%), Postives = 43/60 (71.67%), Query Frame = 0

Query: 31 MFVIRILWFTPKLFGPKSSAVMETAAANMKPELIPTSAVPMYTVTVVDDAANRKNAIGVG 90
          MFVI+ILW TP  FGPKSS VMETAAANM PEL P SAVP      V D A++  AIGVG
Sbjct: 1  MFVIKILWLTPTPFGPKSSDVMETAAANMNPELRPISAVPTCNADAVPDDASKNRAIGVG 60

BLAST of MS026293 vs. NCBI nr
Match: KAD4384970.1 (hypothetical protein E3N88_25138 [Mikania micrantha])

HSP 1 Score: 75.9 bits (185), Expect = 2.6e-10
Identity = 38/71 (53.52%), Postives = 48/71 (67.61%), Query Frame = 0

Query: 36  ILWFTPKLFGPKSSAVMETAAANMKPELIPTSAVPMYTVTVVDDAANRKNAIGVGISAID 95
           +LWFTP   GPK S V++TAA   KPEL PT  VP+++ ++V  +   +NAI VG S   
Sbjct: 358 MLWFTPTFLGPKRSDVIDTAAEKKKPELRPTREVPIWSASLVPVSERTRNAIAVGASPPA 417

Query: 96  SHPVLAKYSFL 107
           SHPVLAKY FL
Sbjct: 418 SHPVLAKYIFL 428

BLAST of MS026293 vs. ExPASy TrEMBL
Match: A0A2P5C6G8 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_178900 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.2e-21
Identity = 56/91 (61.54%), Postives = 64/91 (70.33%), Query Frame = 0

Query: 12  PCESYTTAASMPYSSDPIGMFVIRILWFTPKLFGPKSSAVMETAAANMKPELIPTSAVPM 71
           P ESYTTAAS PY SDPIGMFV+R+LW TP LF PKSS V++TAA N  PEL P  AVPM
Sbjct: 17  PFESYTTAASRPYRSDPIGMFVMRMLWLTPALFAPKSSDVIDTAAENTNPELTPIKAVPM 76

Query: 72  YTVTVVDDAANRKNAIGVGISAIDSHPVLAK 103
                + D A++  AIG G  A+ SHPVL K
Sbjct: 77  RNTASLPDIASKNKAIGAGTIAMASHPVLGK 107

BLAST of MS026293 vs. ExPASy TrEMBL
Match: A0A2P5EPN9 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_166570 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 7.8e-21
Identity = 55/91 (60.44%), Postives = 63/91 (69.23%), Query Frame = 0

Query: 12  PCESYTTAASMPYSSDPIGMFVIRILWFTPKLFGPKSSAVMETAAANMKPELIPTSAVPM 71
           P ESYTTAAS PY SDPIGM V+R+LW  P LF PKSS V++TAA N  PEL P  AVPM
Sbjct: 17  PFESYTTAASRPYRSDPIGMLVMRMLWLIPALFAPKSSDVIDTAAENTNPELTPIKAVPM 76

Query: 72  YTVTVVDDAANRKNAIGVGISAIDSHPVLAK 103
                + D A++K AIG G  A+ SHPVL K
Sbjct: 77  RNTASLPDIASKKKAIGAGTIAMASHPVLGK 107

BLAST of MS026293 vs. ExPASy TrEMBL
Match: A0A0P0Y697 (Os12g0106525 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0106525 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.0e-12
Identity = 45/76 (59.21%), Postives = 52/76 (68.42%), Query Frame = 0

Query: 31  MFVIRILWFTPKLFGPKSSAVMETAAANMKPELIPTSAVPMYTVTVVDDAANRKNAIGVG 90
           M V+R+LWF P LFGPKSS V +TAAA MKPEL P SAVP   V    +   RKNAIG+G
Sbjct: 1   MLVMRMLWFMPMLFGPKSSEVTDTAAAKMKPELRPISAVPATRVFTSCNFHIRKNAIGMG 60

Query: 91  ISAIDSHPVLAKYSFL 107
            +A  SHPV A  +FL
Sbjct: 61  TNAAASHPVRANETFL 76

BLAST of MS026293 vs. ExPASy TrEMBL
Match: A0A5N6N5L0 (Glyco_trans_4-like_N domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_25138 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.3e-10
Identity = 38/71 (53.52%), Postives = 48/71 (67.61%), Query Frame = 0

Query: 36  ILWFTPKLFGPKSSAVMETAAANMKPELIPTSAVPMYTVTVVDDAANRKNAIGVGISAID 95
           +LWFTP   GPK S V++TAA   KPEL PT  VP+++ ++V  +   +NAI VG S   
Sbjct: 358 MLWFTPTFLGPKRSDVIDTAAEKKKPELRPTREVPIWSASLVPVSERTRNAIAVGASPPA 417

Query: 96  SHPVLAKYSFL 107
           SHPVLAKY FL
Sbjct: 418 SHPVLAKYIFL 428

BLAST of MS026293 vs. ExPASy TrEMBL
Match: A0A5N6PKL0 (Glyco_trans_4-like_N domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_09179 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 6.2e-10
Identity = 37/71 (52.11%), Postives = 47/71 (66.20%), Query Frame = 0

Query: 36  ILWFTPKLFGPKSSAVMETAAANMKPELIPTSAVPMYTVTVVDDAANRKNAIGVGISAID 95
           +LWFTP   GPK S V++TAA   KPEL P   VP+++ ++V  +   +NAI VG S   
Sbjct: 357 MLWFTPTFLGPKRSDVIDTAAEKKKPELRPMREVPIWSASLVPVSERTRNAIAVGASPPA 416

Query: 96  SHPVLAKYSFL 107
           SHPVLAKY FL
Sbjct: 417 SHPVLAKYIFL 427

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PON56672.12.5e-2161.54hypothetical protein PanWU01x14_178900 [Parasponia andersonii][more]
PON87479.11.6e-2060.44hypothetical protein TorRG33x02_166570 [Trema orientale][more]
KAB8116295.12.1e-1259.21hypothetical protein EE612_057325 [Oryza sativa] >BAT15505.1 Os12g0106525 [Oryza... [more]
KAF2586189.11.5e-1066.67hypothetical protein F2Q70_00034653 [Brassica cretica][more]
KAD4384970.12.6e-1053.52hypothetical protein E3N88_25138 [Mikania micrantha][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2P5C6G81.2e-2161.54Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_178900 PE... [more]
A0A2P5EPN97.8e-2160.44Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_166570 PE=4 SV... [more]
A0A0P0Y6971.0e-1259.21Os12g0106525 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0106525 PE... [more]
A0A5N6N5L01.3e-1053.52Glyco_trans_4-like_N domain-containing protein OS=Mikania micrantha OX=192012 GN... [more]
A0A5N6PKL06.2e-1052.11Glyco_trans_4-like_N domain-containing protein OS=Mikania micrantha OX=192012 GN... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS026293.1MS026293.1mRNA