MS026238 (gene) Bitter gourd (TR) v1

Overview
NameMS026238
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPentatricopeptide repeat-containing protein
Locationscaffold797: 1046267 .. 1046748 (-)
RNA-Seq ExpressionMS026238
SyntenyMS026238
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATCAGCCCATCATCATCTAAGAGCTCGCTTCTGTAAGTCAAAACCGCCTTCACTTTCATATATACAAAATTCTTAGTTAGCTCTTTCCCGAAATGTCTTTCTTCCTGGATGTTATCAGAACTGTATTATAAACCTTATGATGCCAAATTGTGACATTTGTTATATCCTCTCTCAAATGTTACAGGAACTTAGGCTTGGCCCCGATCCATCCCGCTCAACATTTGTTCTTGATTTGTTCCCCACTTCGTGACTACATGGCTCCAGTCAAATCACTATTTGCTGAAGGAAAAGATGTAGAATTGAATCAACTTCTTGAGAGCACACTGAAAAGCTATAGGATAAGCAACGCAGAACTAGCGAAGGTACTCGTCAAAATCAAGCATAAAGAAGGTAACTTGGATGCAGTTTTCAATGTGCTTAAAGAGATGGCTTACAGTGGCTTACTATCATACAGTTCTGGTTACATGGGCGTGTGA

mRNA sequence

ATGGAAATCAGCCCATCATCATCTAAGAGCTCGCTTCTGAACTTAGGCTTGGCCCCGATCCATCCCGCTCAACATTTGTTCTTGATTTGTTCCCCACTTCGTGACTACATGGCTCCAGTCAAATCACTATTTGCTGAAGGAAAAGATGTAGAATTGAATCAACTTCTTGAGAGCACACTGAAAAGCTATAGGATAAGCAACGCAGAACTAGCGAAGGTACTCGTCAAAATCAAGCATAAAGAAGGTAACTTGGATGCAGTTTTCAATGTGCTTAAAGAGATGGCTTACAGTGGCTTACTATCATACAGTTCTGGTTACATGGGCGTGTGA

Coding sequence (CDS)

ATGGAAATCAGCCCATCATCATCTAAGAGCTCGCTTCTGAACTTAGGCTTGGCCCCGATCCATCCCGCTCAACATTTGTTCTTGATTTGTTCCCCACTTCGTGACTACATGGCTCCAGTCAAATCACTATTTGCTGAAGGAAAAGATGTAGAATTGAATCAACTTCTTGAGAGCACACTGAAAAGCTATAGGATAAGCAACGCAGAACTAGCGAAGGTACTCGTCAAAATCAAGCATAAAGAAGGTAACTTGGATGCAGTTTTCAATGTGCTTAAAGAGATGGCTTACAGTGGCTTACTATCATACAGTTCTGGTTACATGGGCGTGTGA

Protein sequence

MEISPSSSKSSLLNLGLAPIHPAQHLFLICSPLRDYMAPVKSLFAEGKDVELNQLLESTLKSYRISNAELAKVLVKIKHKEGNLDAVFNVLKEMAYSGLLSYSSGYMGV
Homology
[Close]
BLAST of MS026238 vs. NCBI nr
Match: XP_022135848.1 (pentatricopeptide repeat-containing protein At5g39710 [Momordica charantia] >XP_022135849.1 pentatricopeptide repeat-containing protein At5g39710 [Momordica charantia] >XP_022135850.1 pentatricopeptide repeat-containing protein At5g39710 [Momordica charantia] >XP_022135851.1 pentatricopeptide repeat-containing protein At5g39710 [Momordica charantia])

HSP 1 Score: 103.2 bits (256), Expect = 1.4e-18
Identity = 54/67 (80.60%), Postives = 60/67 (89.55%), Query Frame = 0 

Query: 37  MAPVKSLFAEGKDVELNQLLESTLKSYRISNAELAKVLVKIKHKEGNLDAVFNVLKEMAY 96
           MA  KSLF EGKDVELNQLLESTLKS RI++AELAK LVKI HKEGN+DAVFNVLK+MA+
Sbjct: 677 MALAKSLFDEGKDVELNQLLESTLKSCRINDAELAKELVKINHKEGNMDAVFNVLKDMAH 736

Query: 97  SGLLSYS 104
           +GLL YS
Sbjct: 737 TGLLPYS 743

[Close]
BLAST of MS026238 vs. NCBI nr
Match: XP_038888734.1 (pentatricopeptide repeat-containing protein At5g39710 [Benincasa hispida])

HSP 1 Score: 102.8 bits (255), Expect = 1.9e-18
Identity = 54/68 (79.41%), Postives = 62/68 (91.18%), Query Frame = 0 

Query: 37  MAPVKSLFAEGKDVELNQLLESTLKSYRISNAELAKVLVKIKHKEGNLDAVFNVLKEMAY 96
           MA  KSLF+EGKDVELNQLLE TLKS RI++AELAKVLV+I +KEGN+DAVFNVLK+MA+
Sbjct: 677 MALAKSLFSEGKDVELNQLLEYTLKSCRITDAELAKVLVEINNKEGNMDAVFNVLKDMAH 736

Query: 97  SGLLSYSS 105
           SGLL YSS
Sbjct: 737 SGLLPYSS 744

[Close]
BLAST of MS026238 vs. NCBI nr
Match: XP_016901757.1 (PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5g39710-like [Cucumis melo])

HSP 1 Score: 96.3 bits (238), Expect = 1.8e-16
Identity = 51/71 (71.83%), Postives = 58/71 (81.69%), Query Frame = 0 

Query: 37  MAPVKSLFAEGKDVELNQLLESTLKSYRISNAELAKVLVKIKHKEGNLDAVFNVLKEMAY 96
           MA  KSL++EGKDVELNQLL+ TLKS RI+   LAKVLV I  KEGN+DAVFNVLK+MA 
Sbjct: 677 MALAKSLYSEGKDVELNQLLDYTLKSCRITEGALAKVLVGINSKEGNMDAVFNVLKDMAL 736

Query: 97  SGLLSYSSGYM 108
           SGLL YSS Y+
Sbjct: 737 SGLLPYSSAYL 747

[Close]
BLAST of MS026238 vs. NCBI nr
Match: KAA0031285.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK06737.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 96.3 bits (238), Expect = 1.8e-16
Identity = 51/71 (71.83%), Postives = 58/71 (81.69%), Query Frame = 0 

Query: 37  MAPVKSLFAEGKDVELNQLLESTLKSYRISNAELAKVLVKIKHKEGNLDAVFNVLKEMAY 96
           MA  KSL++EGKDVELNQLL+ TLKS RI+   LAKVLV I  KEGN+DAVFNVLK+MA 
Sbjct: 677 MALAKSLYSEGKDVELNQLLDYTLKSCRITEGALAKVLVGINSKEGNMDAVFNVLKDMAL 736

Query: 97  SGLLSYSSGYM 108
           SGLL YSS Y+
Sbjct: 737 SGLLPYSSAYL 747

[Close]
BLAST of MS026238 vs. NCBI nr
Match: XP_022972338.1 (pentatricopeptide repeat-containing protein At5g39710 [Cucurbita maxima])

HSP 1 Score: 95.5 bits (236), Expect = 3.0e-16
Identity = 49/71 (69.01%), Postives = 61/71 (85.92%), Query Frame = 0 

Query: 37  MAPVKSLFAEGKDVELNQLLESTLKSYRISNAELAKVLVKIKHKEGNLDAVFNVLKEMAY 96
           MA    LFAEGKDVELN++LE TLKS +I++AELAKVLV I +KEGN+DAVFNV+K+MA+
Sbjct: 677 MALANLLFAEGKDVELNRVLEYTLKSCKITDAELAKVLVDINNKEGNMDAVFNVIKDMAH 736

Query: 97  SGLLSYSSGYM 108
           SGLL YSS ++
Sbjct: 737 SGLLPYSSAHL 747

[Close]
BLAST of MS026238 vs. ExPASy Swiss-Prot
Match: Q9FIX3 (Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana OX=3702 GN=EMB2745 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.2e-09
Identity = 34/64 (53.12%), Postives = 44/64 (68.75%), Query Frame = 0 

Query: 37  MAPVKSLFAEGKDVELNQLLESTLKSYRISNAELAKVLVKIKHKEGNLDAVFNVLKEMAY 96
           +A VK+L  EGK  ELN ++   L+S  +S AE AKVLV+I H+EGN+D V +VL EMA 
Sbjct: 679 IALVKALHKEGKVNELNSVIVHVLRSCELSEAEQAKVLVEINHREGNMDVVLDVLAEMAK 738

Query: 97  SGLL 101
            G L
Sbjct: 739 DGFL 742

[Close]
BLAST of MS026238 vs. ExPASy TrEMBL
Match: A0A6J1C1W8 (pentatricopeptide repeat-containing protein At5g39710 OS=Momordica charantia OX=3673 GN=LOC111007700 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 6.9e-19
Identity = 54/67 (80.60%), Postives = 60/67 (89.55%), Query Frame = 0 

Query: 37  MAPVKSLFAEGKDVELNQLLESTLKSYRISNAELAKVLVKIKHKEGNLDAVFNVLKEMAY 96
           MA  KSLF EGKDVELNQLLESTLKS RI++AELAK LVKI HKEGN+DAVFNVLK+MA+
Sbjct: 677 MALAKSLFDEGKDVELNQLLESTLKSCRINDAELAKELVKINHKEGNMDAVFNVLKDMAH 736

Query: 97  SGLLSYS 104
           +GLL YS
Sbjct: 737 TGLLPYS 743

[Close]
BLAST of MS026238 vs. ExPASy TrEMBL
Match: A0A5D3C4F1 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00380 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 8.5e-17
Identity = 51/71 (71.83%), Postives = 58/71 (81.69%), Query Frame = 0 

Query: 37  MAPVKSLFAEGKDVELNQLLESTLKSYRISNAELAKVLVKIKHKEGNLDAVFNVLKEMAY 96
           MA  KSL++EGKDVELNQLL+ TLKS RI+   LAKVLV I  KEGN+DAVFNVLK+MA 
Sbjct: 677 MALAKSLYSEGKDVELNQLLDYTLKSCRITEGALAKVLVGINSKEGNMDAVFNVLKDMAL 736

Query: 97  SGLLSYSSGYM 108
           SGLL YSS Y+
Sbjct: 737 SGLLPYSSAYL 747

[Close]
BLAST of MS026238 vs. ExPASy TrEMBL
Match: A0A1S4E0J0 (LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5g39710-like OS=Cucumis melo OX=3656 GN=LOC103495222 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 8.5e-17
Identity = 51/71 (71.83%), Postives = 58/71 (81.69%), Query Frame = 0 

Query: 37  MAPVKSLFAEGKDVELNQLLESTLKSYRISNAELAKVLVKIKHKEGNLDAVFNVLKEMAY 96
           MA  KSL++EGKDVELNQLL+ TLKS RI+   LAKVLV I  KEGN+DAVFNVLK+MA 
Sbjct: 677 MALAKSLYSEGKDVELNQLLDYTLKSCRITEGALAKVLVGINSKEGNMDAVFNVLKDMAL 736

Query: 97  SGLLSYSSGYM 108
           SGLL YSS Y+
Sbjct: 737 SGLLPYSSAYL 747

[Close]
BLAST of MS026238 vs. ExPASy TrEMBL
Match: A0A6J1I9N0 (pentatricopeptide repeat-containing protein At5g39710 OS=Cucurbita maxima OX=3661 GN=LOC111470919 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.4e-16
Identity = 49/71 (69.01%), Postives = 61/71 (85.92%), Query Frame = 0 

Query: 37  MAPVKSLFAEGKDVELNQLLESTLKSYRISNAELAKVLVKIKHKEGNLDAVFNVLKEMAY 96
           MA    LFAEGKDVELN++LE TLKS +I++AELAKVLV I +KEGN+DAVFNV+K+MA+
Sbjct: 677 MALANLLFAEGKDVELNRVLEYTLKSCKITDAELAKVLVDINNKEGNMDAVFNVIKDMAH 736

Query: 97  SGLLSYSSGYM 108
           SGLL YSS ++
Sbjct: 737 SGLLPYSSAHL 747

[Close]
BLAST of MS026238 vs. ExPASy TrEMBL
Match: A0A6J1GKD6 (pentatricopeptide repeat-containing protein At5g39710 OS=Cucurbita moschata OX=3662 GN=LOC111455115 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.4e-16
Identity = 50/71 (70.42%), Postives = 61/71 (85.92%), Query Frame = 0 

Query: 37  MAPVKSLFAEGKDVELNQLLESTLKSYRISNAELAKVLVKIKHKEGNLDAVFNVLKEMAY 96
           MA    LFAEGKDVELN++LE TLKS RI++AELAKVLV I +KEGN+DAVFNV+K+MA+
Sbjct: 677 MALGNLLFAEGKDVELNRVLEYTLKSCRIADAELAKVLVDINNKEGNMDAVFNVIKDMAH 736

Query: 97  SGLLSYSSGYM 108
           SGLL YSS ++
Sbjct: 737 SGLLPYSSAHL 747

[Close]
BLAST of MS026238 vs. TAIR 10
Match: AT5G39710.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 63.2 bits (152), Expect = 1.5e-10
Identity = 34/64 (53.12%), Postives = 44/64 (68.75%), Query Frame = 0 

Query: 37  MAPVKSLFAEGKDVELNQLLESTLKSYRISNAELAKVLVKIKHKEGNLDAVFNVLKEMAY 96
           +A VK+L  EGK  ELN ++   L+S  +S AE AKVLV+I H+EGN+D V +VL EMA 
Sbjct: 679 IALVKALHKEGKVNELNSVIVHVLRSCELSEAEQAKVLVEINHREGNMDVVLDVLAEMAK 738

Query: 97  SGLL 101
            G L
Sbjct: 739 DGFL 742

The following BLAST results are available for this feature:
BLAST of MS026238 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022135848.11.4e-1880.60pentatricopeptide repeat-containing protein At5g39710 [Momordica charantia] >XP_... [more]
XP_038888734.11.9e-1879.41pentatricopeptide repeat-containing protein At5g39710 [Benincasa hispida][more]
XP_016901757.11.8e-1671.83PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5g... [more]
KAA0031285.11.8e-1671.83pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK06737... [more]
XP_022972338.13.0e-1669.01pentatricopeptide repeat-containing protein At5g39710 [Cucurbita maxima][more]
BLAST of MS026238 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FIX32.2e-0953.13Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana OX... [more]
BLAST of MS026238 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1C1W86.9e-1980.60pentatricopeptide repeat-containing protein At5g39710 OS=Momordica charantia OX=... [more]
A0A5D3C4F18.5e-1771.83Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S4E0J08.5e-1771.83LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5g39710-like ... [more]
A0A6J1I9N01.4e-1669.01pentatricopeptide repeat-containing protein At5g39710 OS=Cucurbita maxima OX=366... [more]
A0A6J1GKD61.4e-1670.42pentatricopeptide repeat-containing protein At5g39710 OS=Cucurbita moschata OX=3... [more]
BLAST of MS026238 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G39710.11.5e-1053.13Tetratricopeptide repeat (TPR)-like superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS026238.1MS026238.1mRNA