MS026235 (gene) Bitter gourd (TR) v1

Overview
NameMS026235
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionB3 domain-containing protein At3g19184-like
Locationscaffold797: 987146 .. 989222 (-)
RNA-Seq ExpressionMS026235
SyntenyMS026235
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAATGGATTTAGAGTTTTATTTCTCTATTTGGTTATGGAAGACGAAGCAGCTGAAGCGTCCTCGCCGCCCGCTCGATGTCTCGTCCGTCAGTGTGAGAAGATCCAGCCGTTTTGCGGATAAGCCCCCTCCGAACTATAAGGAGGTACGAGCTGGCCTCTGAGCTCTACATTTTGAATTTGACACCATTTTTTGAAATAATGCTTCAGTTCCTGAACAGTAACCTAGTTTAAGCATTTACGTGGATGATTTTGAATACAATGAATAAAAGTGTAGCTTAATGTTTGTCAGTTTATGATTTAAGCATTTACATGAATTATTTTGAATAGTCGTTTTTCTTTCTTGGTGGGGTTTTACAATGTAGCTTAGTCCTTCGATCTTATTGGCCTTTCCAGGTGCCCATTGAACCACTTCCAGGTGTCAGAAGGTATGCACGAACTTCAGTTTCAAATTACTGTCTTGGACTATTTAGTGTCTTCTAACTCAAAAGGCAACAATAATTTTAATAGGATATATCAACGGAGAGATTTGTTGAGTCGAGTTTATGCTTCACAAGAAGAAAGGCAATATGCAGTTGACAGAGCACTGGAACTTCAGTCTAGCTTGGAATCTAGGTACCCAAATTTTGTGAAGCCCATGCTTCAGTCACATGTCACCGGGGGATTTTGGCTGGTCAGTCTTTTAGATCATTTTACTGAATTTGTAAGCTTTGATTGGTTATATATAGCCTATAAAATGCTTGTGAGAATTTTCTTATAGGGTCTTCCAGTTCAATTTTGCAAGACGCACCTTCCCCTTGAGGATGAAATGATTACTCTGGTGGATGAGGATGAAAACGAGTTCCAAACTAAATACCTCGCCGAGAAGACGGGTCTTAGCGGTGGTTGGAGAGGGTTTTCCATGGATCACCAGTTAGTAGATGGGGATGCTGTGGTGTTTCAGTTAACTAAGCCAACTGAATTCAAGGTGATTACTTGGAAAATTTCATTGCCCGATTGAAATATTCTGCATTGGCCAAAGCTTCTTCTCATGTGACTCCAGTTTGATGGGTACATGCACAAATTTTCCAGCACATTTAATTTGAGGTTTAGCGCATAGTTGTATGGTGTCTTGCATATAGCATGGTTCATATCCAAGAGAGTTTAATACAAGACACTTGAACAGTATAGCTTCTTCAAAATCTATAGGAGACGATAGAACTTTCTATTGCATGAGAAACACCTAAAGAGAAGGGGAAGTAGATTTTGGGTAGTGTAGAGAAGTTTTTCCTTGAAGAAGCATGATGAATTTTGTCCAAAATAAACTTAAAACCCTTGTTGTTTCTTGAGTTGACCTTAGGTTGGCAGGTGAAGCGTGTCTAGAACTCATGAGCATGATATAATTGCTAGTTCCAATACTCCGATTATTTAGAATTAAGAAAAAACAATCCACAAAATGATTCTCCTTTCCTTTTTCATTTCCTCATTATTGGTTAGATTGAGAATGCAAGTAAAGTCCCACATTGACTAGATAATGAGAAGATCATAAATATAAGAAACTAAACGTAAATTCACGAGAGCTGGATAATATTATACGGTCAAGTTTCAAAACCTATGATTAAAAAAGTTCCTTCCCTTTCCAAGTTGTGAACATCCTTGCTCATGTACGAAATTTGAGTAATAAATATCTATACTAATGACCTCAGCTTTGCCACTCATAGGTATACATCATCAGGGCATATAATTCCGAAGACAAAAAAGCAGACACCAAAGAGGATTCCGATGTCTCTCAGGTGGAAAGAAGCGGCAAAAGAACTACTAGATCAGCAAGTAAAGGTCTGGTTATAACATAGCTGTCGCATGTTTTTAATTGGTAATGATGTCTGAAAAGAGACTCGGATTTCAGTTTTCATTTCTCATATTCATTGGTAATTTGTTTTTTTTTTTCTGAGATAATATTCATTGGTAATTTGTTGCTTTTTCTAACAGGGAGAAAATAGCTCAAAGCGTTGCCTTTGCCACGTGGCTTGTGACAAGGAGAAGTATCCAAGACTTTTTGGGAAAAAGAGAGTTTTCAGGATATTTTGTCAGTCTTAG

mRNA sequence

ATGATAATGGATTTAGAGTTTTATTTCTCTATTTGGTTATGGAAGACGAAGCAGCTGAAGCGTCCTCGCCGCCCGCTCGATGTCTCGTCCGTCAGTGTGAGAAGATCCAGCCGTTTTGCGGATAAGCCCCCTCCGAACTATAAGGAGGTGCCCATTGAACCACTTCCAGGTGTCAGAAGGTATACATCATCAGGGCATATAATTCCGAAGACAAAAAAGCAGACACCAAAGAGGATTCCGATGTCTCTCAGGTGGAAAGAAGCGGCAAAAGAACTACTAGATCAGCAAGTAAAGGGAGAAAATAGCTCAAAGCGTTGCCTTTGCCACGTGGCTTGTGACAAGGAGAAGTATCCAAGACTTTTTGGGAAAAAGAGAGTTTTCAGGATATTTTGTCAGTCTTAG

Coding sequence (CDS)

ATGATAATGGATTTAGAGTTTTATTTCTCTATTTGGTTATGGAAGACGAAGCAGCTGAAGCGTCCTCGCCGCCCGCTCGATGTCTCGTCCGTCAGTGTGAGAAGATCCAGCCGTTTTGCGGATAAGCCCCCTCCGAACTATAAGGAGGTGCCCATTGAACCACTTCCAGGTGTCAGAAGGTATACATCATCAGGGCATATAATTCCGAAGACAAAAAAGCAGACACCAAAGAGGATTCCGATGTCTCTCAGGTGGAAAGAAGCGGCAAAAGAACTACTAGATCAGCAAGTAAAGGGAGAAAATAGCTCAAAGCGTTGCCTTTGCCACGTGGCTTGTGACAAGGAGAAGTATCCAAGACTTTTTGGGAAAAAGAGAGTTTTCAGGATATTTTGTCAGTCTTAG

Protein sequence

MIMDLEFYFSIWLWKTKQLKRPRRPLDVSSVSVRRSSRFADKPPPNYKEVPIEPLPGVRRYTSSGHIIPKTKKQTPKRIPMSLRWKEAAKELLDQQVKGENSSKRCLCHVACDKEKYPRLFGKKRVFRIFCQS
Homology
[Close]
BLAST of MS026235 vs. NCBI nr
Match: XP_022135700.1 (B3 domain-containing protein At3g19184-like isoform X2 [Momordica charantia])

HSP 1 Score: 93.6 bits (231), Expect = 1.4e-15
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 0 

Query: 16 TKQLKRPRRPLDVSSVSVRRSSRFADKPPPNYKEVPIEPLPGVRR 61
          TKQLKRPRRPLDVSSVSVRRSSRFADKPPPNYKEVPIEPLPGVRR
Sbjct: 45 TKQLKRPRRPLDVSSVSVRRSSRFADKPPPNYKEVPIEPLPGVRR 89

[Close]
BLAST of MS026235 vs. NCBI nr
Match: XP_022135699.1 (B3 domain-containing protein At3g19184-like isoform X1 [Momordica charantia])

HSP 1 Score: 93.6 bits (231), Expect = 1.4e-15
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 0 

Query: 16 TKQLKRPRRPLDVSSVSVRRSSRFADKPPPNYKEVPIEPLPGVRR 61
          TKQLKRPRRPLDVSSVSVRRSSRFADKPPPNYKEVPIEPLPGVRR
Sbjct: 45 TKQLKRPRRPLDVSSVSVRRSSRFADKPPPNYKEVPIEPLPGVRR 89

[Close]
BLAST of MS026235 vs. NCBI nr
Match: XP_023530120.1 (B3 domain-containing protein At3g19184 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 85.1 bits (209), Expect = 4.9e-13
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 0 

Query: 16 TKQLKRPRRPLDVSSVSVRRSSRFADKPPPNYKEVPIEPLPGVRRY 62
          TKQLKRPR+P D+SS SVRRSSRFADKPPPNYKEVPIEPLPG R Y
Sbjct: 45 TKQLKRPRQPHDISSFSVRRSSRFADKPPPNYKEVPIEPLPGNRSY 90

[Close]
BLAST of MS026235 vs. NCBI nr
Match: XP_022988869.1 (B3 domain-containing protein At3g19184-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 85.1 bits (209), Expect = 4.9e-13
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 0 

Query: 16 TKQLKRPRRPLDVSSVSVRRSSRFADKPPPNYKEVPIEPLPGVRRY 62
          TKQLKRPR+P D+SS SVRRSSRFADKPPPNYKEVPIEPLPG R Y
Sbjct: 45 TKQLKRPRQPHDISSFSVRRSSRFADKPPPNYKEVPIEPLPGNRSY 90

[Close]
BLAST of MS026235 vs. NCBI nr
Match: KAG6588654.1 (B3 domain-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 85.1 bits (209), Expect = 4.9e-13
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 0 

Query: 16 TKQLKRPRRPLDVSSVSVRRSSRFADKPPPNYKEVPIEPLPGVRRY 62
          TKQLKRPR+P D+SS SVRRSSRFADKPPPNYKEVPIEPLPG R Y
Sbjct: 45 TKQLKRPRQPHDISSFSVRRSSRFADKPPPNYKEVPIEPLPGNRSY 90

[Close]
BLAST of MS026235 vs. ExPASy TrEMBL
Match: A0A6J1C272 (B3 domain-containing protein At3g19184-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111007595 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 6.7e-16
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 0 

Query: 16 TKQLKRPRRPLDVSSVSVRRSSRFADKPPPNYKEVPIEPLPGVRR 61
          TKQLKRPRRPLDVSSVSVRRSSRFADKPPPNYKEVPIEPLPGVRR
Sbjct: 45 TKQLKRPRRPLDVSSVSVRRSSRFADKPPPNYKEVPIEPLPGVRR 89

[Close]
BLAST of MS026235 vs. ExPASy TrEMBL
Match: A0A6J1C1S1 (B3 domain-containing protein At3g19184-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111007595 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 6.7e-16
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 0 

Query: 16 TKQLKRPRRPLDVSSVSVRRSSRFADKPPPNYKEVPIEPLPGVRR 61
          TKQLKRPRRPLDVSSVSVRRSSRFADKPPPNYKEVPIEPLPGVRR
Sbjct: 45 TKQLKRPRRPLDVSSVSVRRSSRFADKPPPNYKEVPIEPLPGVRR 89

[Close]
BLAST of MS026235 vs. ExPASy TrEMBL
Match: A0A6J1JMT2 (B3 domain-containing protein At3g19184-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111486093 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.4e-13
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 0 

Query: 16 TKQLKRPRRPLDVSSVSVRRSSRFADKPPPNYKEVPIEPLPGVRRY 62
          TKQLKRPR+P D+SS SVRRSSRFADKPPPNYKEVPIEPLPG R Y
Sbjct: 45 TKQLKRPRQPHDISSFSVRRSSRFADKPPPNYKEVPIEPLPGNRSY 90

[Close]
BLAST of MS026235 vs. ExPASy TrEMBL
Match: A0A6J1EIB3 (B3 domain-containing protein At3g19184-like OS=Cucurbita moschata OX=3662 GN=LOC111434496 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.4e-13
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 0 

Query: 16 TKQLKRPRRPLDVSSVSVRRSSRFADKPPPNYKEVPIEPLPGVRRY 62
          TKQLKRPR+P D+SS SVRRSSRFADKPPPNYKEVPIEPLPG R Y
Sbjct: 45 TKQLKRPRQPHDISSFSVRRSSRFADKPPPNYKEVPIEPLPGNRSY 90

[Close]
BLAST of MS026235 vs. ExPASy TrEMBL
Match: A0A5D3C624 (B3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00430 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 3.1e-13
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 0 

Query: 16 TKQLKRPRRPLDVSSVSVRRSSRFADKPPPNYKEVPIEPLPGVRR 61
          TKQLKRPR+P DVSS SVRRSSRFADKPP NYKEVPIEPLPG+RR
Sbjct: 45 TKQLKRPRQPFDVSSFSVRRSSRFADKPPMNYKEVPIEPLPGIRR 89

The following BLAST results are available for this feature:
BLAST of MS026235 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022135700.11.4e-15100.00B3 domain-containing protein At3g19184-like isoform X2 [Momordica charantia][more]
XP_022135699.11.4e-15100.00B3 domain-containing protein At3g19184-like isoform X1 [Momordica charantia][more]
XP_023530120.14.9e-1386.96B3 domain-containing protein At3g19184 [Cucurbita pepo subsp. pepo][more]
XP_022988869.14.9e-1386.96B3 domain-containing protein At3g19184-like isoform X1 [Cucurbita maxima][more]
KAG6588654.14.9e-1386.96B3 domain-containing protein, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of MS026235 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS026235 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1C2726.7e-16100.00B3 domain-containing protein At3g19184-like isoform X1 OS=Momordica charantia OX... [more]
A0A6J1C1S16.7e-16100.00B3 domain-containing protein At3g19184-like isoform X2 OS=Momordica charantia OX... [more]
A0A6J1JMT22.4e-1386.96B3 domain-containing protein At3g19184-like isoform X1 OS=Cucurbita maxima OX=36... [more]
A0A6J1EIB32.4e-1386.96B3 domain-containing protein At3g19184-like OS=Cucurbita moschata OX=3662 GN=LOC... [more]
A0A5D3C6243.1e-1388.89B3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
BLAST of MS026235 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..77

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS026235.1MS026235.1mRNA