MS026075 (gene) Bitter gourd (TR) v1

Overview


Name	MS026075
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	U1 small nuclear ribonucleoprotein A isoform X2
Location	scaffold239: 2010165 .. 2017063 (-)
RNA-Seq Expression	MS026075
Synteny	MS026075

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGACATGGCGAGTTTCTATCCGCCACCACCGCAAGCACCACCGCCGCAGCCTTCTGGTCTTGAAGCTCCTCACTATCCCTATTACCAGGTGCCTCCTCCTCCTTCTTCAGCACCGCCGTCTCAGCATTACCTCGCTCAACACCCGCCCACCTTCGCTACCTATGGCTTACCGTTTTTACCTCACGCAGCGTCCCCTAATGAGGTCCGAACCCTATTCATAGCCGGCCTTCCTGAAGATGTCAAGCCCCGAGAAATCTACAATCTCTTCCGGGAGTTTCCGGGATACGAGTCCTCTCATCTTCGGAGCCCCACGCAGACGACGCAGGTGTCGTATTTACTCTGAAAATTGCAAAATTGTTGATTCTTGCGGCATTTGTGTAACCTTGATTTTATTTTTCTTCTGAGTATTACAATTGTCCCTAATTAGGGTGTCTGGATGCTTACACATGAAAAATGCTCTTAGCTTTTAGAGTCATGAGTAAACTCGTGGGCATTGAGTTGCTTTAGTTCCAAAGGAGGAGATTAAGGACCGCCTTGTAAAGGATTCTGGTTAGGCTACTGTAAATAGTTGGCTTTTGAAGAAGTTCTTAGATCATGGTTAAACAAAATTAACTTGGACCTGGTTTGTTGAGGTTCATTTGAAGTTTCATCTCGATCAAATACTTAAATGTTAATTTATGAGAAAATAAAATAGATAGATAAAATAATAACACAGCTAAGTTTCTATTCTAATACCTTAATCAAAGAATACATCATAGTAATCTATTTATATAATAAACTTAAATAAAAATCCAGTTTTCCTTCGAGAGATATAAACGTCAAATCGCAATTTAAATGAAAAAAAAGCCACATTAAGAAAACATAATCTAACGTCCCCTCAAACTCATGGTATCTATTGTGAGTTTTCTAACTAAATGATGAGTGCGATGTGTTTAATTCTAACTGAAGCATGATGTTTCTGTACCAATGTCAATGTTGATGCCAAAATGCTAATGCTAATACCAATGCGAATGTGGAAAATCATATCAGTGACTCTATTGCCGTGCTGGGTTTTGGTGGAATGCAAATGACATCAACAAAAATTTCTTCAACAACTCCTTTCACTCGTAATTTCTCATGAATAATATGGAAGACCTCTATAGTAGAATTTCCCAATACTCCCAACCATTAAATGCAAGTTAGCATTAAAGAAGGCACTGATCCGGTTTTCACCAACTTGTAACCCCCATTACTCGCTACTGCTAAATGCAAGTCGGTATCCAACTTGTAATCCCTTTCTTCAATTTCAAGGCCGTCCACTAACTTTTCACCCTTGCTCCTGATCACAACTGTATTCTACTTCCCACGACCACGAAAATGGTGGTGGAAGCGTAGGTCACCCCATCCTTGAGAGTCATGCTACCATATAAGTATACAACCCAAATAATGAAAATACGTTGCTGCCTAGCAAGTTCAGAGACCTTTGTCATGTTTGGAACTATAGCTTTTGCTTCATTCACATCATAGACCCTTCCTCAATAAATCTCTTTTCCCGTCAAGGGCAAGGAGAGCAGAGTGCTTCCACTTATCTGCCTTAGCTAAGAAGCACCAGAAAGATTTCCATATTGTGTGGACAATAATTATGGCTTGGTCGGTGTCATTTTGATGGATGCAAAACCTCATTTCCCTCGTAATTTAAATGCAACTATGGACCAATTCCAATCTTTTTGCTCAAATTTCTCAGTAAAAAGTCGTGTTCCCTAACTTCTATTGAACATTTTGGCCTCATAAAAAAATTGCTATTTTGTTGCTAATGCATTGACACAGGTAATAATATTCTACATTGCTTTCTCTTGTACCATTTACTTGGTTGATAGTGACTTGTGCCTTACGAATTATGCATACATATCTTGTTGTCAGGATAGCAATCTGAAACCTTTGTTGGCAATGCCAAAACAGGCTTGTATTATGTTATTGGTGTCCTTGTTTAAGGGTTCTTAAGTTAGCCAACATAATCTCAGGTCCAGGGATTGTCATTGTGGTAATGGTCTCTGTATTCTGGCCAAGTTCAGAGCTGTTGAGACTATAAACTGGGATATTAATATCCCATGTTTTTCTACTGAAGAATTGCTGCAATCTCCTGTTTCTCAAGTCCAATGCACATAGAAAGGTTGGGGACCTTTGTTTGTATAGGAAATTTACAATTTTTCCATATTCTCTGACCAACAATCTGCCGTTGCTGCAATAAATTGTAACAATTTTATGCAAGTACTCTTCAAAGACGTGTATTCAGTGCTTATGGCTGTCACTGTAACTTCTAAAAGCTTGAATTTTTCTTTTCCCACTGTCTCATGGAATATCTTATGCATACAGTTGACAGTATACCATATCATCATTTGTGTTGATTTGTAGACCTTATATTTTATTGATTAGCATAATGCATGGATTTTATTACAATTTTGTTTGTTGTGGTTACAGCCATTTGCATTTGCTGTATTCTCGGACCAGCAGTCTGCCATTGGTGCAATGCATGCAGTAAACGTAAGTATTTCTGCTCCACTTCTGTATGGACAAGAAAGTTATATCAATGATAAAAAAGGTACACATCAAGAACGTGGAAAAGGAAGAATGTAGCCCTGCCTTTTGCTAGAAGGATACACAAATATTTCCATTGGTTTAATTGTAGGAGTACAGTCACTACCTTTTTAAAATAAAGAGCACCATCTAGATACTAGTAAGAGAATGACGTCTTCCACCTAGTGAAGTGATCATATATTTTTCCCCCTTTGATTATGTATCGTATGTACTACACACACATATGGGTACAAATAAAGCTTGGAGAATGATGTTATTCAAACTTTTGTTGCTTTCTGAACAAAGCTGCCAAAACAAAGCTCAGCATGTATCAAAACATTCTCCTCTTGGAATCTAATCTTCCAAACAAATTCATTGAAGTAATGAAGTGACAAGGCCAAGATTAGGAATATTAGTAGGGAAATTTAGGGTTAATATTAGAATATTTGAGGGGCGGATTTGTCATTTATAGGAGTTGGGTAGTAAGAATTTTAGGAGAGTCCAAGCCTCTCAAGATACTTAGGTGGAAAGTCTAGGCCTCTTGAAATGCTAGGGAATTGTAAATTTCTTTTCTACATTGCAATACAATTTAATATCACATTTGTTGCAGGGCATGGTATTTGATCTTGAGAAGCAGTCAGTACTATACGTTGATTTAGCTAAATCCAATTCAAGATCAAAGCGGACAAGGACAGGTCCATATCTTGGCTGTCCACTCATGATTTTACTTATTTATTGTATGTAGTGGTATAACTAATTTGAAATTGGTCTTGTTGATGTGTTCATCACACGATTAGAGGATGAAAGATATGGATCTGATAAGAAAGCTAAAGTATCTATGTTTTCAAGGAGTACACCTGATTCTGGTAAGACGATTTCTTGGCATAATTTAGGGCTGTGAACTATTTCTTACACAAGCTTTTCTTATTTTCTGTCCTCTTGATGGTCCTATGGTAACTATTATAATGATTTTTTTAATATATAAATCTTGCCCCTCTGATTTATTTGAGGATAATTACGTGGTGCTTGTATAACCTCTTGGAGTAAGTAGTAATTAATTAGTCACGCAGAGGACACATTATTCTAAAAGCTCACTTTGCACATGTTTTGCACGCTTGGGCACTAGCAGGTCTTGGCAGCACTCACATGTCTGGAATGGGTAATTCTGCTTACAACACGATTGGTTATCCATCTGCACAAAGGTCATCTGCACTACTTAGCACATTTTTATTATTGAAATAGTTAATTACAAGCTTACGTGAAGCTTATACATTATTGTATAAGAGTAATCACAAGCAGAAAGTTCAAGGGTTTGAGTAAAAAGCTCTTACTACACGCCCTGACTCCTGTGTTGGGTTTTTAAGTTTTGTTCACTTGCTTCATTATCTTTCTTCTTATATGTTCTAATTAATGTGTAATTTCTACCATCAGCCATGGAAGCTTTGATAACAAAAGTGTAAATGATACAGTGGCTGCAAATGTGGTAAGGTTACCTTTTGTTGCTATCCGTGGTTCTTCAGTCCCTATAAGCTACTTGCATACTCTATTCCTGTTCCATAAGCACTATATGATCAATAACTGAATTACTTATCCTAATAGAAGTAGCAATCAAGTTGTGCGCATAATTATATCCCAAATTGGGATAACGTTTCACTACATTAGCTAAAATACTGTTTCGATGTTCATTTGTTAATTTAAATTGGATTTGCATTTTCCTATCAAAGAAAAAAGAAATAAAGAAAGAAAGAAAAGAAATAGAAAAGGTGAAATTTACTCAACTTGCTGTAAATTCTTCATTCTTAGTGAGGATTTGATGCCTGAGGCTCTATTTTGGTTCATCCATATGAATGTTTTAGACGAGTATGTGTACTGAAATTATTTTTATATCCACTTGACTTGAAATTTGGATATGCATTTTCCTATTAGAATTTTTTATTCCCAACAAGATGCAATTTACTCAACTTGCTGTAAATTCTTTACTCTTGTTGAGGAGTTGATATGTCTGAGGCTCTATCTTGGTGCATATGAATGTTTTAGGCGAGTATTTGTATTGAAATTGCAGTTGTATGGTTATTGTCGAGGTGATAACAAGTTATCACTGGGATAATCCTATAGTTCAATGCCTCTTTATGGGCTTCATGTTGTTCTGTGGTTTATTTTGTTAAAAAGAAATAGAAGACGTTTTTTAGGGCACGGTCTTACTTGGACACAATATGTTCTATAACTTGTACCTTTGTGTCTTAGAGTTGAAGAATGTTTTTTTCGGATAGATAGGTTGTGGGAAGGTTGTGGGATCGTCACATTTCCTTCCTGTGGGTTCGTTATTCAAAAATTTTCTGCAATTTTTATATTACCAAAAGTTGGTCTTTCTTGTAAGTTGCTTTGTATTGCCCACTTTTGTTTTGGCCTTTCTATGAGTTTCTTTTTGTAAGCATTAGTTTTCCCATTAAGAAAATCTAGGTTAAAATATTTTGGTCTTGTAATTTTAGCTTTGGTTCAATTTAGTTCTTTACTTTTAAAATGTTCATTGTGGTCCCAGTAGTTTCAACTTTTGTTTCTTTTAGTTCCTATACTATTAAAATGTTCGTTTCGGTTCATGTAATTTTAAAAGTGATCATTTGCAAAAGTTTAACACAAGCTATACCTAATGTGAACCATTTAATATAAAGTCATGATTACATTTCAAAAAATATATTAAGTATAGTATCATGCTGGAATTATGAGACCAAAGTGGTCACTTTTTAAAAGCACAGAGATCAAAACTAACATTTTGAAAGTACAAGGACGAAAATGAACTAAAGTTGAAAGTACAGGAACTAAACTGAACATTTTGAAAATACAGGAACAGAATGAACCAAAGCCGAAAGGAAATGGGACCAAAATATTATTTTAACCGAAAAAAAAAAAAGAACTCACTTGAAAATCAGGATAAACATATTGTGAACAAACACAGAGCAAAATTTATCTACCTTGAAGTTCTAAAGTAATATTTGCATGTATTCCTTCGGTTTTTGTTGCCTCTTTTGGAGGCAAGAGGGCAATTCAGGGCATAGGGCTGCTTTTGATGCGTATTAGGACTGGTTAATTTAAAGCTTTTTCCATGAACAAGTTTTATTGGATCGTTAAATATATGTAATTGCATTCAAATTCTTCCACTCATTTTATATTCAGCCATTAATTCATGCTGTGTTTAGGTGAACTCATCTGAGTTATGCTTGACTGACCTTTCTTAGCGCTATTTATTTGGTAAATCCTGTTAACTTTGGCAGAATAATTCTTCATAACTTCATTCCACAGACTCCTCAAAATCCCCCATGTCCAACACTTTTTGTGGCAAATCTTGGGCCAAGTTGCACAGAGCAAGAGCTAATTCAAACTTTTTCGAGGTTGGTAATCTTGCTGCACAGTATTTTGGGTCATGTTCTGAACATCGAAGAACTTGCATGATCTGTTTATTTGATGATTCCTTCCAGATGCCCGGGTTTTTTGAAACTGAAGATGCAGAGCACATATGGGGCCCCAGTTGCTTTTGTTGATTTTCAGGTTAGCAGAGTCCTTCTCTTCTCAATGGTATTCTTCTGTAGTTCATAAACTTTATCCTACTTAGCATCGAAGCTCAGGAATTAGACACTCCAGGTTCTGTGTTTACTTGCGTTAGTTAGAATCTTAGATGGAGACTTTCTGCACTGCCGACAATAGTTATCACCACCCTAAGGCTTTGAATCTTTCTGGACTTTATATCCCTGGCCATTCACAAGACGTGTTGCTTTTAGATATTCCATTCCAGGGAACTATTTTACTAGTATAATGGTCTATTGCTTAAATTATTACATGTTCCACAGCAAATTAGACAGAATTGCTTTTCGATCCTTAAGATTCCAACTTAAGGACTTAATAAACAAGGCTAAAAAGACCTGAAGTGTAATATAAAATAAGCAAGATTAGCAAGAAAAAGACAAGAAGACCAAAACTTGACTCCTACACTAACAATGCCAAGAAAAGAAGCAAAAAAAGCAGAACCATACATTTTACTCAATTCTTTATCCAGTTAAAAGTAAGGAAATATACTCAAATAATCCCATATCATGGGATTATCATTAATCTTTCACATAGGATAAGATTTTTTAATGGGCATAATAAATATATTAGATGTGAGTTGTTTACGTATTCTATTGTTATCTTGTGTGAAATGTGCGCTCGCAATATATACAGGATACTGCCTGTTCAACTGGAGCACTGAACCATCTGCAAGGTTCAATTCTGTACTCATCACCTCCTGGGGAGGGCATGCGATTGGAGTATCCTTCTACAATATTTTTATTCTTTACATTGTATTGCTAA

mRNA sequence

ATGGACGACATGGCGAGTTTCTATCCGCCACCACCGCAAGCACCACCGCCGCAGCCTTCTGGTCTTGAAGCTCCTCACTATCCCTATTACCAGGTGCCTCCTCCTCCTTCTTCAGCACCGCCGTCTCAGCATTACCTCGCTCAACACCCGCCCACCTTCGCTACCTATGGCTTACCGTTTTTACCTCACGCAGCGTCCCCTAATGAGGTCCGAACCCTATTCATAGCCGGCCTTCCTGAAGATGTCAAGCCCCGAGAAATCTACAATCTCTTCCGGGAGTTTCCGGGATACGAGTCCTCTCATCTTCGGAGCCCCACGCAGACGACGCAGCCATTTGCATTTGCTGTATTCTCGGACCAGCAGTCTGCCATTGGTGCAATGCATGCAGTAAACGGCATGGTATTTGATCTTGAGAAGCAGTCAGTACTATACGTTGATTTAGCTAAATCCAATTCAAGATCAAAGCGGACAAGGACAGAGGATGAAAGATATGGATCTGATAAGAAAGCTAAAGTATCTATGTTTTCAAGGAGTACACCTGATTCTGGTCTTGGCAGCACTCACATGTCTGGAATGGGTAATTCTGCTTACAACACGATTGGTTATCCATCTGCACAAAGCCATGGAAGCTTTGATAACAAAAGTGTAAATGATACAGTGGCTGCAAATGTGGTAAGCGCTATTTATTTGGTAAATCCTGTTAACTTTGGCAGAATAATTCTTCATAACTTCATTCCACAGACTCCTCAAAATCCCCCATGTCCAACACTTTTTGTGGCAAATCTTGGGCCAAGTTGCACAGAGCAAGAGCTAATTCAAACTTTTTCGAGATGCCCGGGTTTTTTGAAACTGAAGATGCAGAGCACATATGGGGCCCCAGTTGCTTTTGTTGATTTTCAGGATACTGCCTGTTCAACTGGAGCACTGAACCATCTGCAAGGTTCAATTCTGTACTCATCACCTCCTGGGGAGGGCATGCGATTGGAGTATCCTTCTACAATATTTTTATTCTTTACATTGTATTGCTAA

Coding sequence (CDS)

ATGGACGACATGGCGAGTTTCTATCCGCCACCACCGCAAGCACCACCGCCGCAGCCTTCTGGTCTTGAAGCTCCTCACTATCCCTATTACCAGGTGCCTCCTCCTCCTTCTTCAGCACCGCCGTCTCAGCATTACCTCGCTCAACACCCGCCCACCTTCGCTACCTATGGCTTACCGTTTTTACCTCACGCAGCGTCCCCTAATGAGGTCCGAACCCTATTCATAGCCGGCCTTCCTGAAGATGTCAAGCCCCGAGAAATCTACAATCTCTTCCGGGAGTTTCCGGGATACGAGTCCTCTCATCTTCGGAGCCCCACGCAGACGACGCAGCCATTTGCATTTGCTGTATTCTCGGACCAGCAGTCTGCCATTGGTGCAATGCATGCAGTAAACGGCATGGTATTTGATCTTGAGAAGCAGTCAGTACTATACGTTGATTTAGCTAAATCCAATTCAAGATCAAAGCGGACAAGGACAGAGGATGAAAGATATGGATCTGATAAGAAAGCTAAAGTATCTATGTTTTCAAGGAGTACACCTGATTCTGGTCTTGGCAGCACTCACATGTCTGGAATGGGTAATTCTGCTTACAACACGATTGGTTATCCATCTGCACAAAGCCATGGAAGCTTTGATAACAAAAGTGTAAATGATACAGTGGCTGCAAATGTGGTAAGCGCTATTTATTTGGTAAATCCTGTTAACTTTGGCAGAATAATTCTTCATAACTTCATTCCACAGACTCCTCAAAATCCCCCATGTCCAACACTTTTTGTGGCAAATCTTGGGCCAAGTTGCACAGAGCAAGAGCTAATTCAAACTTTTTCGAGATGCCCGGGTTTTTTGAAACTGAAGATGCAGAGCACATATGGGGCCCCAGTTGCTTTTGTTGATTTTCAGGATACTGCCTGTTCAACTGGAGCACTGAACCATCTGCAAGGTTCAATTCTGTACTCATCACCTCCTGGGGAGGGCATGCGATTGGAGTATCCTTCTACAATATTTTTATTCTTTACATTGTATTGCTAA

Protein sequence

MDDMASFYPPPPQAPPPQPSGLEAPHYPYYQVPPPPSSAPPSQHYLAQHPPTFATYGLPFLPHAASPNEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSDQQSAIGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSMFSRSTPDSGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKSVNDTVAANVVSAIYLVNPVNFGRIILHNFIPQTPQNPPCPTLFVANLGPSCTEQELIQTFSRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPPGEGMRLEYPSTIFLFFTLYC

Homology

[Close]

BLAST of MS026075 vs. NCBI nr
Match: XP_022133116.1 (protein WHI4 [Momordica charantia])

HSP 1 Score: 603.6 bits (1555), Expect = 1.1e-168
Identity = 307/330 (93.03%), Postives = 307/330 (93.03%), Query Frame = 0


Query: 1   MDDMASFYPPPPQAPPPQPSGLEAPHYPYYQVPPPPSSAPPSQHYLAQHPPTFATYGLPF 60
           MDDMASFYPPPPQAPPPQPSGLEAPHYPYYQVPPPPSSAPPSQHYLAQHPPTFATYGLPF
Sbjct: 1   MDDMASFYPPPPQAPPPQPSGLEAPHYPYYQVPPPPSSAPPSQHYLAQHPPTFATYGLPF 60

Query: 61  LPHAASPNEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSDQ 120
           LPHAASPNEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSDQ
Sbjct: 61  LPHAASPNEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSDQ 120

Query: 121 QSAIGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSMFSRSTP 180
           QSAIGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSMFSRSTP
Sbjct: 121 QSAIGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSMFSRSTP 180

Query: 181 DSGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKSVNDTVAANVVSAIYLVNPVNFGRII 240
           DSGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKSVNDTVAANV                
Sbjct: 181 DSGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKSVNDTVAANV---------------- 240

Query: 241 LHNFIPQTPQNPPCPTLFVANLGPSCTEQELIQTFSRCPGFLKLKMQSTYGAPVAFVDFQ 300
                  TPQNPPCPTLFVANLGPSCTEQELIQTFSRCPGFLKLKMQSTYGAPVAFVDFQ
Sbjct: 241 -------TPQNPPCPTLFVANLGPSCTEQELIQTFSRCPGFLKLKMQSTYGAPVAFVDFQ 300

Query: 301 DTACSTGALNHLQGSILYSSPPGEGMRLEY 331
           DTACSTGALNHLQGSILYSSPPGEGMRLEY
Sbjct: 301 DTACSTGALNHLQGSILYSSPPGEGMRLEY 307

[Close]

BLAST of MS026075 vs. NCBI nr
Match: XP_023543723.1 (protein WHI4 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 568.5 bits (1464), Expect = 3.8e-158
Identity = 291/331 (87.92%), Postives = 299/331 (90.33%), Query Frame = 0


Query: 1   MDDMASFYPPPPQ-APPPQPSGLEAPHYPYYQVPPPPSSAPPSQHYLAQHPPTFATYGLP 60
           MDD+ S+Y PPPQ  PP QPSGLEAPHYPYYQVPPPPSSAP SQHYLAQHPPTFA+YGLP
Sbjct: 1   MDDITSYYAPPPQPQPPSQPSGLEAPHYPYYQVPPPPSSAPSSQHYLAQHPPTFASYGLP 60

Query: 61  FLPHAASPNEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD 120
           FLPHAAS NEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD
Sbjct: 61  FLPHAASINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD 120

Query: 121 QQSAIGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSMFSRST 180
           QQSA+GAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVS+FSRST
Sbjct: 121 QQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIFSRST 180

Query: 181 PDSGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKSVNDTVAANVVSAIYLVNPVNFGRI 240
           PD GLGSTHMSGMGNSAYNTIGYPSAQSHGSFD+K+VNDTVAANV               
Sbjct: 181 PDPGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDSKTVNDTVAANV--------------- 240

Query: 241 ILHNFIPQTPQNPPCPTLFVANLGPSCTEQELIQTFSRCPGFLKLKMQSTYGAPVAFVDF 300
                   TPQNPPCPTLFVANLGPSCTEQEL+Q FSRCPGFLKLKMQSTYGAPVAFVDF
Sbjct: 241 --------TPQNPPCPTLFVANLGPSCTEQELVQIFSRCPGFLKLKMQSTYGAPVAFVDF 300

Query: 301 QDTACSTGALNHLQGSILYSSPPGEGMRLEY 331
           QDTACSTGALNHLQGSILYSSPPGEGMRLEY
Sbjct: 301 QDTACSTGALNHLQGSILYSSPPGEGMRLEY 308

[Close]

BLAST of MS026075 vs. NCBI nr
Match: XP_038881694.1 (protein WHI4 isoform X2 [Benincasa hispida])

HSP 1 Score: 568.2 bits (1463), Expect = 4.9e-158
Identity = 290/330 (87.88%), Postives = 298/330 (90.30%), Query Frame = 0


Query: 1   MDDMASFYPPPPQAPPPQPSGLEAPHYPYYQVPPPPSSAPPSQHYLAQHPPTFATYGLPF 60
           MDDMAS+YP P   PPPQPSGLE PHYP+YQVPPPPSSAPPSQHYL+QHPPTFA+YGLPF
Sbjct: 1   MDDMASYYPQP--QPPPQPSGLEPPHYPFYQVPPPPSSAPPSQHYLSQHPPTFASYGLPF 60

Query: 61  LPHAASPNEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSDQ 120
           LPHAAS NEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLR+PTQTTQPFAFAVFSDQ
Sbjct: 61  LPHAASINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQ 120

Query: 121 QSAIGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSMFSRSTP 180
           QSAIGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVS+FSRSTP
Sbjct: 121 QSAIGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIFSRSTP 180

Query: 181 DSGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKSVNDTVAANVVSAIYLVNPVNFGRII 240
           D GLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNK+VNDTVAANV+               
Sbjct: 181 DPGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKTVNDTVAANVI--------------- 240

Query: 241 LHNFIPQTPQNPPCPTLFVANLGPSCTEQELIQTFSRCPGFLKLKMQSTYGAPVAFVDFQ 300
                   PQNPPCPTLFVANLGPSCTEQELIQ FSRCPGFLKLKMQSTYGAPVAFVDFQ
Sbjct: 241 --------PQNPPCPTLFVANLGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFVDFQ 300

Query: 301 DTACSTGALNHLQGSILYSSPPGEGMRLEY 331
           DT CSTGALNHLQGSILYSSPPGEGMRLEY
Sbjct: 301 DTGCSTGALNHLQGSILYSSPPGEGMRLEY 305

[Close]

BLAST of MS026075 vs. NCBI nr
Match: XP_022949757.1 (protein WHI4 isoform X2 [Cucurbita moschata])

HSP 1 Score: 567.8 bits (1462), Expect = 6.5e-158
Identity = 291/331 (87.92%), Postives = 299/331 (90.33%), Query Frame = 0


Query: 1   MDDMASFYPPPPQ-APPPQPSGLEAPHYPYYQVPPPPSSAPPSQHYLAQHPPTFATYGLP 60
           MDD+ S+Y PPPQ  PP QPSGLEAPHYPYYQVPPPPSSAP SQHYLAQHPPTFA+YGLP
Sbjct: 1   MDDITSYYAPPPQPQPPSQPSGLEAPHYPYYQVPPPPSSAPSSQHYLAQHPPTFASYGLP 60

Query: 61  FLPHAASPNEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD 120
           FLPHAAS NEVRTLFIAGLP+DVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD
Sbjct: 61  FLPHAASINEVRTLFIAGLPDDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD 120

Query: 121 QQSAIGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSMFSRST 180
           QQSA+GAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVS+FSRST
Sbjct: 121 QQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIFSRST 180

Query: 181 PDSGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKSVNDTVAANVVSAIYLVNPVNFGRI 240
           PD GLGSTHMSGMGNSAYNTIGYPSAQSHGSFD+K+VNDTVAANV               
Sbjct: 181 PDPGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDSKTVNDTVAANV--------------- 240

Query: 241 ILHNFIPQTPQNPPCPTLFVANLGPSCTEQELIQTFSRCPGFLKLKMQSTYGAPVAFVDF 300
                   TPQNPPCPTLFVANLGPSCTEQELIQ FSRCPGFLKLKMQSTYGAPVAFVDF
Sbjct: 241 --------TPQNPPCPTLFVANLGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFVDF 300

Query: 301 QDTACSTGALNHLQGSILYSSPPGEGMRLEY 331
           QDTACSTGALNHLQGSILYSSPPGEGMRLEY
Sbjct: 301 QDTACSTGALNHLQGSILYSSPPGEGMRLEY 308

[Close]

BLAST of MS026075 vs. NCBI nr
Match: KAG6604168.1 (Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 567.8 bits (1462), Expect = 6.5e-158
Identity = 291/331 (87.92%), Postives = 299/331 (90.33%), Query Frame = 0


Query: 1   MDDMASFYPPPPQ-APPPQPSGLEAPHYPYYQVPPPPSSAPPSQHYLAQHPPTFATYGLP 60
           MDD+ S+Y PPPQ  PP QPSGLEAPHYPYYQVPPPPSSAP SQHYLAQHPPTFA+YGLP
Sbjct: 1   MDDITSYYAPPPQPQPPSQPSGLEAPHYPYYQVPPPPSSAPSSQHYLAQHPPTFASYGLP 60

Query: 61  FLPHAASPNEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD 120
           FLPHAAS NEVRTLFIAGLP+DVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD
Sbjct: 61  FLPHAASINEVRTLFIAGLPDDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD 120

Query: 121 QQSAIGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSMFSRST 180
           QQSA+GAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVS+FSRST
Sbjct: 121 QQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIFSRST 180

Query: 181 PDSGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKSVNDTVAANVVSAIYLVNPVNFGRI 240
           PD GLGSTHMSGMGNSAYNTIGYPSAQSHGSFD+K+VNDTVAANV               
Sbjct: 181 PDPGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDSKTVNDTVAANV--------------- 240

Query: 241 ILHNFIPQTPQNPPCPTLFVANLGPSCTEQELIQTFSRCPGFLKLKMQSTYGAPVAFVDF 300
                   TPQNPPCPTLFVANLGPSCTEQELIQ FSRCPGFLKLKMQSTYGAPVAFVDF
Sbjct: 241 --------TPQNPPCPTLFVANLGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFVDF 300

Query: 301 QDTACSTGALNHLQGSILYSSPPGEGMRLEY 331
           QDTACSTGALNHLQGSILYSSPPGEGMRLEY
Sbjct: 301 QDTACSTGALNHLQGSILYSSPPGEGMRLEY 308

[Close]

BLAST of MS026075 vs. ExPASy Swiss-Prot
Match: Q6ZRY4 (RNA-binding protein with multiple splicing 2 OS=Homo sapiens OX=9606 GN=RBPMS2 PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 4.1e-14
Identity = 40/94 (42.55%), Postives = 60/94 (63.83%), Query Frame = 0


Query: 65  ASPNEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSDQQSAI 124
           A   EVRTLF++GLP D+KPRE+Y LFR F GYE S ++   +  QP  F +F  +  A 
Sbjct: 25  ALEEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTAR--QPVGFVIFDSRAGAE 84

Query: 125 GAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTR 159
            A +A+NG+ FD E    L ++ AK+N++  +++
Sbjct: 85  AAKNALNGIRFDPENPQTLRLEFAKANTKMAKSK 116

[Close]

BLAST of MS026075 vs. ExPASy Swiss-Prot
Match: Q8VC52 (RNA-binding protein with multiple splicing 2 OS=Mus musculus OX=10090 GN=Rbpms2 PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 4.1e-14
Identity = 39/90 (43.33%), Postives = 60/90 (66.67%), Query Frame = 0


Query: 69  EVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSDQQSAIGAMH 128
           EVRTLF++GLP D+KPRE+Y LFR F GYE S ++  ++  QP  F +F  +  A  A +
Sbjct: 23  EVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSR--QPVGFVIFDSRAGAEAAKN 82

Query: 129 AVNGMVFDLEKQSVLYVDLAKSNSRSKRTR 159
           A+NG+ FD E    L ++ AK+N++  +++
Sbjct: 83  ALNGIRFDPENPQTLRLEFAKANTKMAKSK 110

[Close]

BLAST of MS026075 vs. ExPASy Swiss-Prot
Match: Q6DH13 (RNA-binding protein, mRNA-processing factor 2a OS=Danio rerio OX=7955 GN=rbpms2a PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 7.0e-14
Identity = 39/90 (43.33%), Postives = 59/90 (65.56%), Query Frame = 0


Query: 69  EVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSDQQSAIGAMH 128
           EVRTLF++GLP D+KPRE+Y LFR F GYE S ++  ++  QP  F  F  +  A  A +
Sbjct: 18  EVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTFDSRSGAEAAKN 77

Query: 129 AVNGMVFDLEKQSVLYVDLAKSNSRSKRTR 159
           A+NG+ FD E    L ++ AK+N++  +++
Sbjct: 78  ALNGIRFDPESPQTLRLEFAKANTKMAKSK 105

[Close]

BLAST of MS026075 vs. ExPASy Swiss-Prot
Match: Q9W6I1 (RNA-binding protein with multiple splicing 2 OS=Gallus gallus OX=9031 GN=RBPMS2 PE=1 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 9.1e-14
Identity = 39/90 (43.33%), Postives = 59/90 (65.56%), Query Frame = 0


Query: 69  EVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSDQQSAIGAMH 128
           EVRTLF++GLP D+KPRE+Y LFR F GYE S ++  ++  QP  F  F  +  A  A +
Sbjct: 20  EVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTFDSRAGAEAAKN 79

Query: 129 AVNGMVFDLEKQSVLYVDLAKSNSRSKRTR 159
           A+NG+ FD E    L ++ AK+N++  +++
Sbjct: 80  ALNGIRFDPENPQTLRLEFAKANTKMAKSK 107

[Close]

BLAST of MS026075 vs. ExPASy Swiss-Prot
Match: Q9YGP5 (RNA-binding protein with multiple splicing 2 OS=Xenopus laevis OX=8355 GN=rbpms2 PE=2 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.2e-13
Identity = 39/90 (43.33%), Postives = 59/90 (65.56%), Query Frame = 0


Query: 69  EVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSDQQSAIGAMH 128
           EVRTLF++GLP D+KPRE+Y LFR F GYE S ++  ++  QP  F  F ++  A  A +
Sbjct: 18  EVRTLFVSGLPIDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTFDNRAGAEAAKN 77

Query: 129 AVNGMVFDLEKQSVLYVDLAKSNSRSKRTR 159
           A+NG+ FD E    L ++ AK+N++  + +
Sbjct: 78  ALNGIRFDPENPQTLRLEFAKANTKMAKNK 105

[Close]

BLAST of MS026075 vs. ExPASy TrEMBL
Match: A0A6J1BU41 (protein WHI4 OS=Momordica charantia OX=3673 GN=LOC111005791 PE=4 SV=1)

HSP 1 Score: 603.6 bits (1555), Expect = 5.1e-169
Identity = 307/330 (93.03%), Postives = 307/330 (93.03%), Query Frame = 0


Query: 1   MDDMASFYPPPPQAPPPQPSGLEAPHYPYYQVPPPPSSAPPSQHYLAQHPPTFATYGLPF 60
           MDDMASFYPPPPQAPPPQPSGLEAPHYPYYQVPPPPSSAPPSQHYLAQHPPTFATYGLPF
Sbjct: 1   MDDMASFYPPPPQAPPPQPSGLEAPHYPYYQVPPPPSSAPPSQHYLAQHPPTFATYGLPF 60

Query: 61  LPHAASPNEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSDQ 120
           LPHAASPNEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSDQ
Sbjct: 61  LPHAASPNEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSDQ 120

Query: 121 QSAIGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSMFSRSTP 180
           QSAIGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSMFSRSTP
Sbjct: 121 QSAIGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSMFSRSTP 180

Query: 181 DSGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKSVNDTVAANVVSAIYLVNPVNFGRII 240
           DSGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKSVNDTVAANV                
Sbjct: 181 DSGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKSVNDTVAANV---------------- 240

Query: 241 LHNFIPQTPQNPPCPTLFVANLGPSCTEQELIQTFSRCPGFLKLKMQSTYGAPVAFVDFQ 300
                  TPQNPPCPTLFVANLGPSCTEQELIQTFSRCPGFLKLKMQSTYGAPVAFVDFQ
Sbjct: 241 -------TPQNPPCPTLFVANLGPSCTEQELIQTFSRCPGFLKLKMQSTYGAPVAFVDFQ 300

Query: 301 DTACSTGALNHLQGSILYSSPPGEGMRLEY 331
           DTACSTGALNHLQGSILYSSPPGEGMRLEY
Sbjct: 301 DTACSTGALNHLQGSILYSSPPGEGMRLEY 307

[Close]

BLAST of MS026075 vs. ExPASy TrEMBL
Match: A0A6J1GD02 (protein WHI4 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111453048 PE=4 SV=1)

HSP 1 Score: 567.8 bits (1462), Expect = 3.1e-158
Identity = 291/331 (87.92%), Postives = 299/331 (90.33%), Query Frame = 0


Query: 1   MDDMASFYPPPPQ-APPPQPSGLEAPHYPYYQVPPPPSSAPPSQHYLAQHPPTFATYGLP 60
           MDD+ S+Y PPPQ  PP QPSGLEAPHYPYYQVPPPPSSAP SQHYLAQHPPTFA+YGLP
Sbjct: 1   MDDITSYYAPPPQPQPPSQPSGLEAPHYPYYQVPPPPSSAPSSQHYLAQHPPTFASYGLP 60

Query: 61  FLPHAASPNEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD 120
           FLPHAAS NEVRTLFIAGLP+DVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD
Sbjct: 61  FLPHAASINEVRTLFIAGLPDDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD 120

Query: 121 QQSAIGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSMFSRST 180
           QQSA+GAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVS+FSRST
Sbjct: 121 QQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIFSRST 180

Query: 181 PDSGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKSVNDTVAANVVSAIYLVNPVNFGRI 240
           PD GLGSTHMSGMGNSAYNTIGYPSAQSHGSFD+K+VNDTVAANV               
Sbjct: 181 PDPGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDSKTVNDTVAANV--------------- 240

Query: 241 ILHNFIPQTPQNPPCPTLFVANLGPSCTEQELIQTFSRCPGFLKLKMQSTYGAPVAFVDF 300
                   TPQNPPCPTLFVANLGPSCTEQELIQ FSRCPGFLKLKMQSTYGAPVAFVDF
Sbjct: 241 --------TPQNPPCPTLFVANLGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFVDF 300

Query: 301 QDTACSTGALNHLQGSILYSSPPGEGMRLEY 331
           QDTACSTGALNHLQGSILYSSPPGEGMRLEY
Sbjct: 301 QDTACSTGALNHLQGSILYSSPPGEGMRLEY 308

[Close]

BLAST of MS026075 vs. ExPASy TrEMBL
Match: A0A6J1IQG5 (protein WHI4 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111477875 PE=4 SV=1)

HSP 1 Score: 566.6 bits (1459), Expect = 7.0e-158
Identity = 291/331 (87.92%), Postives = 297/331 (89.73%), Query Frame = 0


Query: 1   MDDMASFYPPPPQ-APPPQPSGLEAPHYPYYQVPPPPSSAPPSQHYLAQHPPTFATYGLP 60
           MDD+ S+Y PPPQ  PP QPSGLEAPHYPYYQVPPPPSSAP SQHYLAQHPPTFA+YGLP
Sbjct: 1   MDDITSYYAPPPQPQPPSQPSGLEAPHYPYYQVPPPPSSAPSSQHYLAQHPPTFASYGLP 60

Query: 61  FLPHAASPNEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD 120
           FLPHAAS NEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD
Sbjct: 61  FLPHAASINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD 120

Query: 121 QQSAIGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSMFSRST 180
           QQSA+GAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKR RTEDERYGSDKKAKVS+FSR T
Sbjct: 121 QQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRMRTEDERYGSDKKAKVSIFSRRT 180

Query: 181 PDSGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKSVNDTVAANVVSAIYLVNPVNFGRI 240
           PD GLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNK+VNDTVAANV               
Sbjct: 181 PDPGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKTVNDTVAANV--------------- 240

Query: 241 ILHNFIPQTPQNPPCPTLFVANLGPSCTEQELIQTFSRCPGFLKLKMQSTYGAPVAFVDF 300
                   TPQNPPCPTLFVANLGPSCTEQELIQ FSRCPGFLKLKMQSTYGAPVAFVDF
Sbjct: 241 --------TPQNPPCPTLFVANLGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFVDF 300

Query: 301 QDTACSTGALNHLQGSILYSSPPGEGMRLEY 331
           QDTACSTGALNHLQGSILYSSPPGEGMRLEY
Sbjct: 301 QDTACSTGALNHLQGSILYSSPPGEGMRLEY 308

[Close]

BLAST of MS026075 vs. ExPASy TrEMBL
Match: A0A6J1GCW9 (U1 small nuclear ribonucleoprotein A isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111453048 PE=4 SV=1)

HSP 1 Score: 563.9 bits (1452), Expect = 4.5e-157
Identity = 291/332 (87.65%), Postives = 300/332 (90.36%), Query Frame = 0


Query: 1   MDDMASFYPPPPQ-APPPQPSGLEAPHYPYYQVPPPPSSAPPSQHYLAQHPPTFATYGLP 60
           MDD+ S+Y PPPQ  PP QPSGLEAPHYPYYQVPPPPSSAP SQHYLAQHPPTFA+YGLP
Sbjct: 1   MDDITSYYAPPPQPQPPSQPSGLEAPHYPYYQVPPPPSSAPSSQHYLAQHPPTFASYGLP 60

Query: 61  FLPHAASPNEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD 120
           FLPHAAS NEVRTLFIAGLP+DVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD
Sbjct: 61  FLPHAASINEVRTLFIAGLPDDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD 120

Query: 121 QQSAIGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSMFSRST 180
           QQSA+GAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVS+FSRST
Sbjct: 121 QQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIFSRST 180

Query: 181 PD-SGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKSVNDTVAANVVSAIYLVNPVNFGR 240
           PD +GLGSTHMSGMGNSAYNTIGYPSAQSHGSFD+K+VNDTVAANV              
Sbjct: 181 PDPAGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDSKTVNDTVAANV-------------- 240

Query: 241 IILHNFIPQTPQNPPCPTLFVANLGPSCTEQELIQTFSRCPGFLKLKMQSTYGAPVAFVD 300
                    TPQNPPCPTLFVANLGPSCTEQELIQ FSRCPGFLKLKMQSTYGAPVAFVD
Sbjct: 241 ---------TPQNPPCPTLFVANLGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFVD 300

Query: 301 FQDTACSTGALNHLQGSILYSSPPGEGMRLEY 331
           FQDTACSTGALNHLQGSILYSSPPGEGMRLEY
Sbjct: 301 FQDTACSTGALNHLQGSILYSSPPGEGMRLEY 309

[Close]

BLAST of MS026075 vs. ExPASy TrEMBL
Match: A0A6J1IMS7 (U1 small nuclear ribonucleoprotein A isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111477875 PE=4 SV=1)

HSP 1 Score: 562.8 bits (1449), Expect = 1.0e-156
Identity = 291/332 (87.65%), Postives = 298/332 (89.76%), Query Frame = 0


Query: 1   MDDMASFYPPPPQ-APPPQPSGLEAPHYPYYQVPPPPSSAPPSQHYLAQHPPTFATYGLP 60
           MDD+ S+Y PPPQ  PP QPSGLEAPHYPYYQVPPPPSSAP SQHYLAQHPPTFA+YGLP
Sbjct: 1   MDDITSYYAPPPQPQPPSQPSGLEAPHYPYYQVPPPPSSAPSSQHYLAQHPPTFASYGLP 60

Query: 61  FLPHAASPNEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD 120
           FLPHAAS NEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD
Sbjct: 61  FLPHAASINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD 120

Query: 121 QQSAIGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSMFSRST 180
           QQSA+GAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKR RTEDERYGSDKKAKVS+FSR T
Sbjct: 121 QQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRMRTEDERYGSDKKAKVSIFSRRT 180

Query: 181 PD-SGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKSVNDTVAANVVSAIYLVNPVNFGR 240
           PD +GLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNK+VNDTVAANV              
Sbjct: 181 PDPAGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKTVNDTVAANV-------------- 240

Query: 241 IILHNFIPQTPQNPPCPTLFVANLGPSCTEQELIQTFSRCPGFLKLKMQSTYGAPVAFVD 300
                    TPQNPPCPTLFVANLGPSCTEQELIQ FSRCPGFLKLKMQSTYGAPVAFVD
Sbjct: 241 ---------TPQNPPCPTLFVANLGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFVD 300

Query: 301 FQDTACSTGALNHLQGSILYSSPPGEGMRLEY 331
           FQDTACSTGALNHLQGSILYSSPPGEGMRLEY
Sbjct: 301 FQDTACSTGALNHLQGSILYSSPPGEGMRLEY 309

[Close]

BLAST of MS026075 vs. TAIR 10
Match: AT2G42240.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 282.0 bits (720), Expect = 6.6e-76
Identity = 175/349 (50.14%), Postives = 217/349 (62.18%), Query Frame = 0


Query: 1   MDDMASFYPPPPQAPPPQPSGLEAPHY--PYYQVPPPPSSAP-PSQHYLAQHPPTFATYG 60
           MDD+ ++Y                 HY  P    PPPP  +P P     + + PT  + G
Sbjct: 1   MDDLEAYY----------------SHYNLPAMVPPPPPGVSPIPITSAHSVYLPTHVSIG 60

Query: 61  LPFLPHAASPNEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVF 120
                   + +EVRTLF+AGLPEDVKPREIYNLFREFPGYE+SHLRS +   +PFAFAVF
Sbjct: 61  --------ARDEVRTLFVAGLPEDVKPREIYNLFREFPGYETSHLRS-SDGAKPFAFAVF 120

Query: 121 SDQQSAIGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSMFSR 180
           SD QSA+  MHA+NGMVFDLEK S L++DLAKSN +SKR+RT+D   G +   K+  ++ 
Sbjct: 121 SDLQSAVAVMHALNGMVFDLEKHSTLHIDLAKSNPKSKRSRTDD---GWESLKKLKSWN- 180

Query: 181 STPDSGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKSVNDTVAANVVSAIYLVNPVNFG 240
           +T +SG GS    GM +SAYNTIGY  AQS G            ANV            G
Sbjct: 181 TTTESGFGSFQTPGMSSSAYNTIGYSPAQSQG-----------IANVA-----------G 240

Query: 241 RIILHNFIPQTPQNP-----PCPTLFVANLGPSCTEQELIQTFSRCPGFLKLKMQSTYGA 300
           R         T + P     PCPTLF+AN+GP+CTE ELIQ FSRC GFLKLK+Q TYG 
Sbjct: 241 R-------APTSRKPSKAADPCPTLFIANMGPNCTEAELIQVFSRCRGFLKLKIQGTYGT 291

Query: 301 PVAFVDFQDTACSTGALNHLQGSILYSSPPGEGMRLEYPSTIFLFFTLY 342
           PVAFVDFQD +CS+ AL+ LQG++LYSS  GE +RL+YPS + + F  +
Sbjct: 301 PVAFVDFQDVSCSSEALHTLQGTVLYSSLTGEVLRLQYPSLLPILFLCF 291

[Close]

BLAST of MS026075 vs. TAIR 10
Match: AT2G42240.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 276.2 bits (705), Expect = 3.6e-74
Identity = 172/338 (50.89%), Postives = 211/338 (62.43%), Query Frame = 0


Query: 1   MDDMASFYPPPPQAPPPQPSGLEAPHY--PYYQVPPPPSSAP-PSQHYLAQHPPTFATYG 60
           MDD+ ++Y                 HY  P    PPPP  +P P     + + PT  + G
Sbjct: 1   MDDLEAYY----------------SHYNLPAMVPPPPPGVSPIPITSAHSVYLPTHVSIG 60

Query: 61  LPFLPHAASPNEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVF 120
                   + +EVRTLF+AGLPEDVKPREIYNLFREFPGYE+SHLRS +   +PFAFAVF
Sbjct: 61  --------ARDEVRTLFVAGLPEDVKPREIYNLFREFPGYETSHLRS-SDGAKPFAFAVF 120

Query: 121 SDQQSAIGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSMFSR 180
           SD QSA+  MHA+NGMVFDLEK S L++DLAKSN +SKR+RT+D   G +   K+  ++ 
Sbjct: 121 SDLQSAVAVMHALNGMVFDLEKHSTLHIDLAKSNPKSKRSRTDD---GWESLKKLKSWN- 180

Query: 181 STPDSGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKSVNDTVAANVVSAIYLVNPVNFG 240
           +T +SG GS    GM +SAYNTIGY  AQS G            ANV            G
Sbjct: 181 TTTESGFGSFQTPGMSSSAYNTIGYSPAQSQG-----------IANVA-----------G 240

Query: 241 RIILHNFIPQTPQNP-----PCPTLFVANLGPSCTEQELIQTFSRCPGFLKLKMQSTYGA 300
           R         T + P     PCPTLF+AN+GP+CTE ELIQ FSRC GFLKLK+Q TYG 
Sbjct: 241 R-------APTSRKPSKAADPCPTLFIANMGPNCTEAELIQVFSRCRGFLKLKIQGTYGT 280

Query: 301 PVAFVDFQDTACSTGALNHLQGSILYSSPPGEGMRLEY 331
           PVAFVDFQD +CS+ AL+ LQG++LYSS  GE +RL+Y
Sbjct: 301 PVAFVDFQDVSCSSEALHTLQGTVLYSSLTGEVLRLQY 280

[Close]

BLAST of MS026075 vs. TAIR 10
Match: AT2G42240.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 273.9 bits (699), Expect = 1.8e-73
Identity = 171/337 (50.74%), Postives = 210/337 (62.31%), Query Frame = 0


Query: 1   MDDMASFYPPPPQAPPPQPSGLEAPHY--PYYQVPPPPSSAP-PSQHYLAQHPPTFATYG 60
           MDD+ ++Y                 HY  P    PPPP  +P P     + + PT  + G
Sbjct: 1   MDDLEAYY----------------SHYNLPAMVPPPPPGVSPIPITSAHSVYLPTHVSIG 60

Query: 61  LPFLPHAASPNEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVF 120
                   + +EVRTLF+AGLPEDVKPREIYNLFREFPGYE+SHLRS +   +PFAFAVF
Sbjct: 61  --------ARDEVRTLFVAGLPEDVKPREIYNLFREFPGYETSHLRS-SDGAKPFAFAVF 120

Query: 121 SDQQSAIGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSMFSR 180
           SD QSA+  MHA+NGMVFDLEK S L++DLAKSN +SKR+RT+D   G +   K+  ++ 
Sbjct: 121 SDLQSAVAVMHALNGMVFDLEKHSTLHIDLAKSNPKSKRSRTDD---GWESLKKLKSWN- 180

Query: 181 STPDSGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKSVNDTVAANVVSAIYLVNPVNFG 240
           +T +SG GS    GM +SAYNTIGY  AQS G            ANV            G
Sbjct: 181 TTTESGFGSFQTPGMSSSAYNTIGYSPAQSQG-----------IANVA-----------G 240

Query: 241 RIILHNFIPQTPQNP-----PCPTLFVANLGPSCTEQELIQTFSRCPGFLKLKMQSTYGA 300
           R         T + P     PCPTLF+AN+GP+CTE ELIQ FSRC GFLKLK+Q TYG 
Sbjct: 241 R-------APTSRKPSKAADPCPTLFIANMGPNCTEAELIQVFSRCRGFLKLKIQGTYGT 279

Query: 301 PVAFVDFQDTACSTGALNHLQGSILYSSPPGEGMRLE 330
           PVAFVDFQD +CS+ AL+ LQG++LYSS  GE +RL+
Sbjct: 301 PVAFVDFQDVSCSSEALHTLQGTVLYSSLTGEVLRLQ 279

[Close]

BLAST of MS026075 vs. TAIR 10
Match: AT3G13700.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 155.2 bits (391), Expect = 9.3e-38
Identity = 113/296 (38.18%), Postives = 153/296 (51.69%), Query Frame = 0


Query: 46  LAQHPP--TFATYGLPFLPH---------AASPNEVRTLFIAGLPEDVKPREIYNLFREF 105
           +A H P   F  Y L   PH         A  P  + TLF++GLP DVK REI+NLFR  
Sbjct: 1   MAYHQPYDPFYVYQLHSHPHHLPPQLPLLADEPGAINTLFVSGLPNDVKAREIHNLFRRR 60

Query: 106 PGYESSHLRSPTQTTQPFAFAVFSDQQSAIGAMHAVNGMVFDLEKQSVLYVDLAKSNSRS 165
            G+ES  L+   +  Q  AFA F+  + A+ AM+ +NG+ FD +  S L+++LA+SNSR 
Sbjct: 61  HGFESCQLKYTGRGDQVVAFATFTSHRFALAAMNELNGVKFDPQTGSNLHIELARSNSRR 120

Query: 166 KRTRTEDERYGSDKKAKVSMFSRSTPDSGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNK 225
           K      ER GS     +   ++    S       S  G+S  + +     Q  G+ D+ 
Sbjct: 121 K------ERPGSGPYVVIDNRNKEISKS---QDDQSDEGDSDPDEV-----QEPGNSDSP 180

Query: 226 SVNDTVAANVVSAIYLVNPVNFGRIILHNFIPQTPQNPPCPTLFVANLGPSCTEQELIQT 285
             NDT  +   S      P   G   L            C TLF+ANLGP+CTE EL Q 
Sbjct: 181 KENDTTKSEADSEPDSKAPSANGH--LEKASEGGSGARACSTLFIANLGPNCTEDELKQL 240

Query: 286 FSRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPPGEGMRLEY 331
            SR PGF  LK+++  G PVAF DF++   +T A+NHLQG++L SS  G GM +EY
Sbjct: 241 LSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLLSSSDRG-GMHIEY 279

[Close]

BLAST of MS026075 vs. TAIR 10
Match: AT3G13700.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 136.7 bits (343), Expect = 3.4e-32
Identity = 116/329 (35.26%), Postives = 155/329 (47.11%), Query Frame = 0


Query: 24  APHYPY-----YQVPPPPSSAPPSQHYLAQHPPTFATYGLPFLPHAASPNEVRTLFIAGL 83
           A H PY     YQ+   P   PP                LP L  A  P  + TLF++GL
Sbjct: 2   AYHQPYDPFYVYQLHSHPHHLPPQ---------------LPLL--ADEPGAINTLFVSGL 61

Query: 84  PEDVKPREIYNLFREFPGYESSHLR------------------SPTQTTQPFAFAVFSDQ 143
           P DVK REI+NLFR   G+ES  L+                   P       AFA F+  
Sbjct: 62  PNDVKAREIHNLFRRRHGFESCQLKYTGRGDQVCKNLQFLFFFIPIFRKAVVAFATFTSH 121

Query: 144 QSAIGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSMFSRSTP 203
           + A+ AM+ +NG+ FD +  S L+++LA+SNSR K      ER GS     +   ++   
Sbjct: 122 RFALAAMNELNGVKFDPQTGSNLHIELARSNSRRK------ERPGSGPYVVIDNRNKEIS 181

Query: 204 DSGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKSVNDTVAANVVSAIYLVNPVNFGRII 263
            S       S  G+S  + +     Q  G+ D+   NDT  +   S      P   G   
Sbjct: 182 KS---QDDQSDEGDSDPDEV-----QEPGNSDSPKENDTTKSEADSEPDSKAPSANGH-- 241

Query: 264 LHNFIPQTPQNPPCPTLFVANLGPSCTEQELIQTFSRCPGFLKLKMQSTYGAPVAFVDFQ 323
           L            C TLF+ANLGP+CTE EL Q  SR PGF  LK+++  G PVAF DF+
Sbjct: 242 LEKASEGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFE 296

Query: 324 DTACSTGALNHLQGSILYSSPPGEGMRLE 330
           +   +T A+NHLQG++L SS  G GM +E
Sbjct: 302 EIEQATDAMNHLQGNLLSSSDRG-GMHIE 296

The following BLAST results are available for this feature:

BLAST of MS026075 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022133116.1	1.1e-168	93.03	protein WHI4 [Momordica charantia]	[more]
XP_023543723.1	3.8e-158	87.92	protein WHI4 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_038881694.1	4.9e-158	87.88	protein WHI4 isoform X2 [Benincasa hispida]	[more]
XP_022949757.1	6.5e-158	87.92	protein WHI4 isoform X2 [Cucurbita moschata]	[more]
KAG6604168.1	6.5e-158	87.92	Ethylene-responsive transcription factor, partial [Cucurbita argyrosperma subsp....	[more]

BLAST of MS026075 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6ZRY4	4.1e-14	42.55	RNA-binding protein with multiple splicing 2 OS=Homo sapiens OX=9606 GN=RBPMS2 P...	[more]
Q8VC52	4.1e-14	43.33	RNA-binding protein with multiple splicing 2 OS=Mus musculus OX=10090 GN=Rbpms2 ...	[more]
Q6DH13	7.0e-14	43.33	RNA-binding protein, mRNA-processing factor 2a OS=Danio rerio OX=7955 GN=rbpms2a...	[more]
Q9W6I1	9.1e-14	43.33	RNA-binding protein with multiple splicing 2 OS=Gallus gallus OX=9031 GN=RBPMS2 ...	[more]
Q9YGP5	1.2e-13	43.33	RNA-binding protein with multiple splicing 2 OS=Xenopus laevis OX=8355 GN=rbpms2...	[more]

BLAST of MS026075 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BU41	5.1e-169	93.03	protein WHI4 OS=Momordica charantia OX=3673 GN=LOC111005791 PE=4 SV=1	[more]
A0A6J1GD02	3.1e-158	87.92	protein WHI4 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111453048 PE=4 SV=1	[more]
A0A6J1IQG5	7.0e-158	87.92	protein WHI4 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111477875 PE=4 SV=1	[more]
A0A6J1GCW9	4.5e-157	87.65	U1 small nuclear ribonucleoprotein A isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1IMS7	1.0e-156	87.65	U1 small nuclear ribonucleoprotein A isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of MS026075 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42240.2	6.6e-76	50.14	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G42240.1	3.6e-74	50.89	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G42240.3	1.8e-73	50.74	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G13700.2	9.3e-38	38.18	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G13700.1	3.4e-32	35.26	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 256..325 e-value: 2.0E-4 score: 30.7 coord: 72..144 e-value: 9.4E-8 score: 41.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 73..136 e-value: 3.1E-10 score: 39.7 coord: 257..319 e-value: 1.4E-8 score: 34.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 255..333 score: 10.667186
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 71..150 score: 12.13395
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 67..160 e-value: 2.5E-20 score: 74.4
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 245..331 e-value: 8.6E-16 score: 59.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 151..170
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 150..185
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..41
None	No IPR available	PANTHER	PTHR10501:SF43	RNA-BINDING PROTEIN-RELATED	coord: 1..328
None	No IPR available	PANTHER	PTHR10501	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	coord: 1..328
None	No IPR available	CDD	cd12245	RRM_scw1_like	coord: 253..331 e-value: 1.75121E-38 score: 130.017
None	No IPR available	CDD	cd12420	RRM_RBPMS_like	coord: 71..146 e-value: 3.30572E-29 score: 105.815
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 68..319

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS026075.1	MS026075.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding