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MS026004 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCATGGCGTCGAAATCGAACCCTAAATGTGAAGAGCAAGCGAGGAACTGGCTTGAACTGCCTGAAGACATCACGTCTATGATTATGATGAAGTTAGGCGCCGTCAATATCCTCTCCAATGCGCAAAACGTCTGCAATTAGTGGCGTAAGATCTGCAAGGACCCTCTCATGTGGCGTGTCGTGGATATGCAAAATCTGGACAATCCCTTCCGCAGGGGCTACGATTCGGAGAAGATATGTATGCAGGCTGTTGATCGTAGTCGTGGCCAACTGGTTGACATCAATATCGAGCATTTTGGCACCGATGAGTTGCTCCACTATATCTCTCAGAGGTATGTTCTTGTTCTATTTTAGTTTCGTTATCTATCTTGTTGTTCTTACGATAGAGAGAAATCAACCTGAAGCCTTGTGTAGTTGCTGTGACGGTTTTTAGGGGAAAAAAAAAAGATCTACTGCAATGGAAGAATGTCAGTGGGATTTTCTGGCGGTTGCATCTTGAACTTGCTGTTTGAATTGTATTTTGCAAATGTGCTTTTCTACTAATTTTGTTTAGATTTTATAATTTAAAATGATCTGGTCAAAATCTGCTTTTGTTCTTTTCTGTTATATTTCTGTAGTGCTTCTAATATAAATCAGAGATGGCCCATTTCTAACATGTAATATAATTTTTATTTTATGAAAGGATTAAAAGTTTGCGCCTGTCTCATGATCCCGTTGATGACTATGATTTCTCTGTCGATCCCTATATTGATAGCGACTACGAGGAATCATTTTCAAATCCTAGTAATCTGAAACGAAACGGTACGGGCAGTAACTGGGAGCCAAACCCTAGTTCATGA ATGGCCATGGCGTCGAAATCGAACCCTAAATGTGAAGAGCAAGCGAGGAACTGGCTTGAACTGCCTGAAGACATCACGGGCTACGATTCGGAGAAGATATGTATGCAGGCTGTTGATCGTAGTCGTGGCCAACTGGTTGACATCAATATCGAGCATTTTGGCACCGATGAGTTGCTCCACTATATCTCTCAGAGGATTAAAAGTTTGCGCCTGTCTCATGATCCCGTTGATGACTATGATTTCTCTGTCGATCCCTATATTGATAGCGACTACGAGGAATCATTTTCAAATCCTAGTAATCTGAAACGAAACGGTACGGGCAGTAACTGGGAGCCAAACCCTAGTTCATGA ATGGCCATGGCGTCGAAATCGAACCCTAAATGTGAAGAGCAAGCGAGGAACTGGCTTGAACTGCCTGAAGACATCACGGGCTACGATTCGGAGAAGATATGTATGCAGGCTGTTGATCGTAGTCGTGGCCAACTGGTTGACATCAATATCGAGCATTTTGGCACCGATGAGTTGCTCCACTATATCTCTCAGAGGATTAAAAGTTTGCGCCTGTCTCATGATCCCGTTGATGACTATGATTTCTCTGTCGATCCCTATATTGATAGCGACTACGAGGAATCATTTTCAAATCCTAGTAATCTGAAACGAAACGGTACGGGCAGTAACTGGGAGCCAAACCCTAGTTCATGA MAMASKSNPKCEEQARNWLELPEDITGYDSEKICMQAVDRSRGQLVDINIEHFGTDELLHYISQRIKSLRLSHDPVDDYDFSVDPYIDSDYEESFSNPSNLKRNGTGSNWEPNPSS Homology
BLAST of MS026004 vs. NCBI nr
Match: XP_022146724.1 (putative F-box/LRR-repeat protein 23 [Momordica charantia]) HSP 1 Score: 81.3 bits (199), Expect = 6.2e-12 Identity = 50/115 (43.48%), Postives = 52/115 (45.22%), Query Frame = 0
BLAST of MS026004 vs. NCBI nr
Match: XP_023543623.1 (F-box protein SKIP19-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 75.5 bits (184), Expect = 3.4e-10 Identity = 47/118 (39.83%), Postives = 55/118 (46.61%), Query Frame = 0
BLAST of MS026004 vs. NCBI nr
Match: XP_038883784.1 (F-box protein SKIP19-like [Benincasa hispida]) HSP 1 Score: 72.8 bits (177), Expect = 2.2e-09 Identity = 45/115 (39.13%), Postives = 52/115 (45.22%), Query Frame = 0
BLAST of MS026004 vs. NCBI nr
Match: KAG6581459.1 (F-box protein SKIP19, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 72.4 bits (176), Expect = 2.9e-09 Identity = 46/118 (38.98%), Postives = 54/118 (45.76%), Query Frame = 0
BLAST of MS026004 vs. NCBI nr
Match: XP_022978592.1 (F-box protein SKIP19-like [Cucurbita maxima]) HSP 1 Score: 72.4 bits (176), Expect = 2.9e-09 Identity = 46/118 (38.98%), Postives = 54/118 (45.76%), Query Frame = 0
BLAST of MS026004 vs. ExPASy Swiss-Prot
Match: Q9M0U9 (F-box protein SKIP19 OS=Arabidopsis thaliana OX=3702 GN=SKIP19 PE=1 SV=1) HSP 1 Score: 52.0 bits (123), Expect = 5.3e-06 Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 0
BLAST of MS026004 vs. ExPASy Swiss-Prot
Match: Q9S9V9 (Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana OX=3702 GN=FBL23 PE=4 SV=1) HSP 1 Score: 49.3 bits (116), Expect = 3.4e-05 Identity = 20/43 (46.51%), Postives = 31/43 (72.09%), Query Frame = 0
BLAST of MS026004 vs. ExPASy Swiss-Prot
Match: Q9M0U7 (Putative F-box protein At4g05475 OS=Arabidopsis thaliana OX=3702 GN=At4g05475 PE=4 SV=2) HSP 1 Score: 48.1 bits (113), Expect = 7.6e-05 Identity = 24/48 (50.00%), Postives = 32/48 (66.67%), Query Frame = 0
BLAST of MS026004 vs. ExPASy TrEMBL
Match: A0A6J1CYW9 (putative F-box/LRR-repeat protein 23 OS=Momordica charantia OX=3673 GN=LOC111015857 PE=4 SV=1) HSP 1 Score: 81.3 bits (199), Expect = 3.0e-12 Identity = 50/115 (43.48%), Postives = 52/115 (45.22%), Query Frame = 0
BLAST of MS026004 vs. ExPASy TrEMBL
Match: A0A6J1ILH5 (F-box protein SKIP19-like OS=Cucurbita maxima OX=3661 GN=LOC111478528 PE=4 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 1.4e-09 Identity = 46/118 (38.98%), Postives = 54/118 (45.76%), Query Frame = 0
BLAST of MS026004 vs. ExPASy TrEMBL
Match: A0A251PHQ1 (F-box domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_4G087900 PE=4 SV=1) HSP 1 Score: 72.0 bits (175), Expect = 1.8e-09 Identity = 32/48 (66.67%), Postives = 39/48 (81.25%), Query Frame = 0
BLAST of MS026004 vs. ExPASy TrEMBL
Match: A0A4D9AMJ6 (F-box domain-containing protein OS=Salvia splendens OX=180675 GN=Saspl_015419 PE=4 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 3.1e-09 Identity = 31/43 (72.09%), Postives = 37/43 (86.05%), Query Frame = 0
BLAST of MS026004 vs. ExPASy TrEMBL
Match: A0A6P6UBH1 (putative F-box/LRR-repeat protein 23 OS=Coffea arabica OX=13443 GN=LOC113709529 PE=4 SV=1) HSP 1 Score: 70.5 bits (171), Expect = 5.3e-09 Identity = 32/45 (71.11%), Postives = 37/45 (82.22%), Query Frame = 0
BLAST of MS026004 vs. TAIR 10
Match: AT4G05460.1 (RNI-like superfamily protein ) HSP 1 Score: 52.0 bits (123), Expect = 3.8e-07 Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 0
BLAST of MS026004 vs. TAIR 10
Match: AT5G52480.1 (RNI-like superfamily protein ) HSP 1 Score: 50.4 bits (119), Expect = 1.1e-06 Identity = 27/54 (50.00%), Postives = 35/54 (64.81%), Query Frame = 0
BLAST of MS026004 vs. TAIR 10
Match: AT4G05475.1 (RNI-like superfamily protein ) HSP 1 Score: 48.1 bits (113), Expect = 5.4e-06 Identity = 24/48 (50.00%), Postives = 32/48 (66.67%), Query Frame = 0
BLAST of MS026004 vs. TAIR 10
Match: AT4G03630.1 (RNI-like superfamily protein ) HSP 1 Score: 45.1 bits (105), Expect = 4.6e-05 Identity = 21/39 (53.85%), Postives = 27/39 (69.23%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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