MS025947 (gene) Bitter gourd (TR) v1

Overview


Name	MS025947
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	ElaB/YqjD/DUF883 family membrane-anchored ribosome-binding protein
Location	scaffold35: 459498 .. 460570 (+)
RNA-Seq Expression	MS025947
Synteny	MS025947

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAGGTTCGTTTGAACCTTCAATCCATCTACGAAACGAAAAGGTGGAGAGTAGAGCAGAGGGGCGAACTGCCGGAACTTATGCAATGAGCCGACGGGAGACGGATTGGGGAGGTGGAAAACGAACAAAGAGGAGACCGTCGTGTTCAAGGACTAATTCGTTTATCATAATACTGGTAATCTCGAACCCGCTTCATAACTCTATGTTTTTGGGTTTCTTTCTTTTGGTTGATAATCGTTATTCGACGGGCCTTCACTTTTTTGCCTCCACTGTAACCCGCGTGAACCAAACTGCTAATTACATCGTTTTCTAAGCTATATTTCTATCATTTTCCTCAATATTGGATTTCTTCCAGTGAAATTATTGCCTGAACTTCAAGTGAACCAAACTCTAATTACATCCTTCTGCTTTCTGTTTTCTATTTTCTAACATTCATGAACTTCACTATTTTGTGGACTCTTACTGGAGAATTAGTCCAAACGATATGAATGTCGGCAAAAATCGATGGACGAGTATCTGCACTCTATTCTGAGAGTGGGTTGCGGTCGCCCGTCCACCCGAGCCCGCGTGCCAGAGTGGGTAGCGGTCGCCCGTCCACCCGCGCCCGCGTGCCAGAGTGGGTAGCGGTCGCCTGGGTAGCGGGCGCCCGTCCACCTGCGCCCGCGTGCCAGAGTGGGTAGCGGTCGCCCGGGTAGCNCAGAGTGGGTAGCGGTCGCCCGTCCCACCCGCGCCGGCGTGCCAGAGTGGGTAGCGGTCGCCCGTCCCACCCGCGCCGGCGTGCCAGAGTGGGTAGCGGTCGCCCGTCCCACCCGCGCCGGCGTGCCAGAGTGGGTAGCGGTCGCCCGTCCCACCCGCGCCGGCGTGCCAGAGTGGGTAGCGGTCGCCCGTCCCACCCGCGCCGGCGTGCCAGAGTGGGTAGCGGTCGCCCGTCCCACCCGCGCCGGCGTGCCAGAGTGGGTAGCGGTCGCCCGTCCCACCCGCGCCGGCGTGCCAGAGTGGGTAGCGGTCGCCCGTCCGCCAGAGTGGGTAGGAGTGGGTTGCATGGGCCCGTCCACCTGCGTGCGAGAGTAG

mRNA sequence

ATGTTAGGTTCGTTTGAACCTTCAATCCATCTACGAAACGAAAAGGTGGAGAGTAGAGCAGAGGGGCGAACTGCCGGAACTTATGCAATGAGCCGACGGGAGACGGATTGGGGAGGTGGAAAACGAACAAAGAGGAGACCGTCGTGTTCAAGGACTAATTCGTTTATCATAATACTGCGGGCGCCCGTCCACCTGCGCCCGCGTGCCAGAGTGGGTAGCGGTCGCCCGGGTAGCNCAGAGTGGGTAGCGGTCGCCCGTCCCACCCGCGCCGGCGTGCCAGAGTGGGTAGCGGTCGCCCGTCCCACCCGCGCCGGCGTGCCAGAGTGGGTAGCGGTCGCCCGTCCCACCCGCGCCGGCGTGCCAGAGTGGGTAGCGGTCGCCCGTCCCACCCGCGCCGGCGTGCCAGAGTGGGTAGCGGTCGCCCGTCCCACCCGCGCCGGCGTGCCAGAGTGGGTAGCGGTCGCCCGTCCCACCCGCGCCGGCGTGCCAGAGTGGGTAGCGGTCGCCCGTCCCACCCGCGCCGGCGTGCCAGAGTGGGTAGCGGTCGCCCGTCCGCCAGAGTGGGTAGGAGTGGGTTGCATGGGCCCGTCCACCTGCGTGCGAGAGTAG

Coding sequence (CDS)

ATGTTAGGTTCGTTTGAACCTTCAATCCATCTACGAAACGAAAAGGTGGAGAGTAGAGCAGAGGGGCGAACTGCCGGAACTTATGCAATGAGCCGACGGGAGACGGATTGGGGAGGTGGAAAACGAACAAAGAGGAGACCGTCGTGTTCAAGGACTAATTCGTTTATCATAATACTGCGGGCGCCCGTCCACCTGCGCCCGCGTGCCAGAGTGGGTAGCGGTCGCCCGGGTAGCNCAGAGTGGGTAGCGGTCGCCCGTCCCACCCGCGCCGGCGTGCCAGAGTGGGTAGCGGTCGCCCGTCCCACCCGCGCCGGCGTGCCAGAGTGGGTAGCGGTCGCCCGTCCCACCCGCGCCGGCGTGCCAGAGTGGGTAGCGGTCGCCCGTCCCACCCGCGCCGGCGTGCCAGAGTGGGTAGCGGTCGCCCGTCCCACCCGCGCCGGCGTGCCAGAGTGGGTAGCGGTCGCCCGTCCCACCCGCGCCGGCGTGCCAGAGTGGGTAGCGGTCGCCCGTCCCACCCGCGCCGGCGTGCCAGAGTGGGTAGCGGTCGCCCGTCCGCCAGAGTGGGTAGGAGTGGGTTGCATGGGCCCGTCCACCTGCGTGCGAGAGTAG

Protein sequence

MLGSFEPSIHLRNEKVESRAEGRTAGTYAMSRRETDWGGGKRTKRRPSCSRTNSFIIILRAPVHLRPRARVGSGRPGSXEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPPEWVGVGCMGPSTCVRE

Homology

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BLAST of MS025947 vs. NCBI nr
Match: WP_044231697.1 (hypothetical protein [Chloroflexus sp. Y-396-1])

HSP 1 Score: 89.0 bits (219), Expect = 5.2e-14
Identity = 42/115 (36.52%), Postives = 58/115 (50.43%), Query Frame = 0


Query: 80  EWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVA 139
           +W+  A P  + VP+W+  A P  A  P+W+  A P  A VP W+  A P     P+W+ 
Sbjct: 457 DWLQAAEPPTSNVPDWLQEAEPATAEAPDWLQAAEPPAADVPAWLQEAEPATTEAPDWLQ 516

Query: 140 VARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARP-----PEWV 190
            A P  A VP W+  A P  A  P+W+  A P  A VP W+  A P     P+W+
Sbjct: 517 AAEPPAADVPAWLQEAEPATAEAPDWLQAAEPPAADVPAWLQEAEPATTEAPDWL 571

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BLAST of MS025947 vs. NCBI nr
Match: MBO9310853.1 (hypothetical protein [Chloroflexus sp.])

HSP 1 Score: 68.6 bits (166), Expect = 7.3e-08
Identity = 37/116 (31.90%), Postives = 55/116 (47.41%), Query Frame = 0


Query: 81  WVAVARPTRAGVPEWV-----AVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVP 140
           W+  A P  + VP+W+     A +  +   VP W+  A P  A  P+W+  A P  + VP
Sbjct: 12  WLQAAEPPASDVPDWLREETGAPSATSATDVPAWLREAEPATAEAPDWLQAAEPPASDVP 71

Query: 141 EWV-----AVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPP 187
           +W+     A +  +   VP W+  A P     P W+  A P+ A VP W+  A PP
Sbjct: 72  DWLREETGAPSATSATDVPAWLREAEPATTEAPGWLQAAEPSAADVPAWLQAAEPP 127

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BLAST of MS025947 vs. NCBI nr
Match: MBO9313315.1 (hypothetical protein [Chloroflexus sp.])

HSP 1 Score: 67.0 bits (162), Expect = 2.1e-07
Identity = 32/113 (28.32%), Postives = 52/113 (46.02%), Query Frame = 0


Query: 68  RARVGSGRPGSXEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVA 127
           +A  G+    +  W+       A  P+W+  A P  + VP+W+  A      VP W+  A
Sbjct: 357 QAEQGATESEAPAWIQETEAPAAEAPDWLQEAEPPTSDVPDWLQEAEAPATDVPAWLQEA 416

Query: 128 RPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWV 181
                 VP+W+  A      +P+W+  A P  A  P+W+  A P  + VP+W+
Sbjct: 417 EAPVTDVPDWLQQAEAPATDIPDWLQEAEPATAEAPDWLRAAEPPTSDVPDWL 469

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BLAST of MS025947 vs. NCBI nr
Match: MBC7228409.1 (tetratricopeptide repeat protein [Thermoflexales bacterium])

HSP 1 Score: 65.9 bits (159), Expect = 4.7e-07
Identity = 49/148 (33.11%), Postives = 62/148 (41.89%), Query Frame = 0


Query: 62  PVHLRPRARVGSGRPGS--XEWVAVARPTRAG---------VPEWVAVARPTRAGVPEWV 121
           P  + P A   S  P +   EW+  A P  AG         +PEW+    P  AGVPE  
Sbjct: 321 PEEVGPEAPAPSEVPEAEVPEWLREAAPPEAGRPEAPAPSEIPEWLREVTPPEAGVPE-- 380

Query: 122 AVARPTRAGVPEWVAVARPTRAG---------VPEWVAVARPTRAGVPEWVAVARPTRAG 181
               P  A +PEW+    P  AG         +PEW+    P   G PE      P    
Sbjct: 381 ---APVPAEIPEWLREVAPPEAGAPEAPVPTEIPEWLREVTPPETGAPE-----APVPTE 440

Query: 182 VPEWVAVARPTRAGVPEWVAVARPPEWV 190
           +PEW+  A P  AG PE  A +  PEW+
Sbjct: 441 IPEWLREAAPPEAGRPEAPAPSEIPEWL 458

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BLAST of MS025947 vs. NCBI nr
Match: MBQ5409685.1 (hypothetical protein [Muribaculaceae bacterium])

HSP 1 Score: 61.6 bits (148), Expect = 8.9e-06
Identity = 54/110 (49.09%), Postives = 54/110 (49.09%), Query Frame = 0


Query: 76  PGSXEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVP 135
           P   E VA A P    VPE VA A P    VPE VA A P    VPE VA A P    VP
Sbjct: 80  PAVPEPVAPAVPEPPAVPEPVAPAVPEPPAVPEPVAPAAPEPPAVPEPVAPAVPEPPAVP 139

Query: 136 EWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARP 186
           E VA A P    VPE VA A P    VPE VA A P    VPE V  A P
Sbjct: 140 EPVAPAVPEPPAVPEPVAPAAPEPPAVPEPVAPAVPEPPAVPEPVVPAAP 189

[Close]

BLAST of MS025947 vs. ExPASy TrEMBL
Match: A0A7G5DPY0 (Transcriptional regulator OS=Pseudomonas sp. MSPm1 OX=2726956 GN=HS968_01735 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 6.2e-05
Identity = 44/124 (35.48%), Postives = 55/124 (44.35%), Query Frame = 0


Query: 62  PVHLRPRARVGSGRPGSXEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVP 121
           P   +P A     +P      A A+P  A  P   A A+P  A  P   A A+P  A  P
Sbjct: 196 PAAAKPAAAKAPAKP------AAAKPAAAKAPAKPAAAKPAAAKAPAKPAAAKPAAAKAP 255

Query: 122 EWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVA 181
              A A+P  A  P   A A+PT A  P   A A+P  A  P   A A+PT A  P  +A
Sbjct: 256 AKPAAAKPAAAKAPAKPAAAKPTAAKAPAKPAAAKPAAAKAPAKPAAAKPTAAKAPAKLA 313

Query: 182 VARP 186
            A+P
Sbjct: 316 AAKP 313

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BLAST of MS025947 vs. ExPASy TrEMBL
Match: A0A7V9XWB8 (ElaB/YqjD/DUF883 family membrane-anchored ribosome-binding protein OS=Pseudomonas sihuiensis OX=1274359 GN=HNQ24_001407 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-04
Identity = 47/145 (32.41%), Postives = 62/145 (42.76%), Query Frame = 0


Query: 41  KRTKRRPSCSRTNSFIIILRAPVHLRPRARVGSGRPGSXEWVAVARPTRAGVPEWVAVAR 100
           K    +P+ ++T +       P   +P A     +P      A A+P  A  P   A A+
Sbjct: 167 KAAAAKPAATKTPA------KPAAAKPAAAKAPAKP------AAAKPAAAKAPAKPAAAK 226

Query: 101 PTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRA 160
           PT A  P   A A+PT A  P   A A+P  A  P   A A+P  A  P   A A+P  A
Sbjct: 227 PTAAKAPAKPAAAKPTAAKAPAKPAAAKPAAAKAPSKPAAAKPAAAKAPAKPAAAKPATA 286

Query: 161 GVPEWVAVARPTRAGVPEWVAVARP 186
             P   A A+P  A  P   A A+P
Sbjct: 287 KAPAKPAAAKPVAAKAPAKPAAAKP 299

[Close]

BLAST of MS025947 vs. ExPASy TrEMBL
Match: A0A7G7REB4 (Transcriptional regulator OS=Pseudomonas sediminis OX=1691904 GN=HNQ25_22940 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-04
Identity = 47/145 (32.41%), Postives = 62/145 (42.76%), Query Frame = 0


Query: 41  KRTKRRPSCSRTNSFIIILRAPVHLRPRARVGSGRPGSXEWVAVARPTRAGVPEWVAVAR 100
           K    +P+ ++T +       P   +P A     +P      A A+P  A  P   A A+
Sbjct: 167 KAAAAKPAATKTPA------KPAAAKPAAAKAPAKP------AAAKPAAAKAPAKPAAAK 226

Query: 101 PTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRA 160
           PT A  P   A A+PT A  P   A A+P  A  P   A A+P  A  P   A A+P  A
Sbjct: 227 PTAAKAPAKPAAAKPTAAKAPAKPAAAKPAAAKAPSKPAAAKPAAAKAPAKPAAAKPATA 286

Query: 161 GVPEWVAVARPTRAGVPEWVAVARP 186
             P   A A+P  A  P   A A+P
Sbjct: 287 KAPAKPAAAKPVAAKAPAKPAAAKP 299

[Close]

BLAST of MS025947 vs. ExPASy TrEMBL
Match: A0A7Z0FN85 (Uncharacterized protein YjbJ (UPF0337 family) OS=Pseudomonas mendocina OX=300 GN=HNQ23_002693 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 5.3e-04
Identity = 43/124 (34.68%), Postives = 53/124 (42.74%), Query Frame = 0


Query: 62  PVHLRPRARVGSGRPGSXEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVP 121
           P   +P A     +P      A A+P  A  P   A A+P  A  P   A A+P  A  P
Sbjct: 210 PAAAKPAAAKAPAKP------AAAKPAAAKAPAKPAAAKPAAAKAPAKPAAAKPAAAKAP 269

Query: 122 EWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVAVARPTRAGVPEWVA 181
              A A+P  A  P   A A+P  A  P   A A+P  A  P   A A+PT A  P   A
Sbjct: 270 AKPAAAKPAAAKAPAKPAAAKPAAAKAPAKPAAAKPAAAKAPAKPAAAKPTAAKAPAKPA 327

Query: 182 VARP 186
            A+P
Sbjct: 330 AAKP 327

The following BLAST results are available for this feature:

BLAST of MS025947 vs. NCBI nr


Match Name	E-value	Identity	Description
WP_044231697.1	5.2e-14	36.52	hypothetical protein [Chloroflexus sp. Y-396-1]	[more]
MBO9310853.1	7.3e-08	31.90	hypothetical protein [Chloroflexus sp.]	[more]
MBO9313315.1	2.1e-07	28.32	hypothetical protein [Chloroflexus sp.]	[more]
MBC7228409.1	4.7e-07	33.11	tetratricopeptide repeat protein [Thermoflexales bacterium]	[more]
MBQ5409685.1	8.9e-06	49.09	hypothetical protein [Muribaculaceae bacterium]	[more]

BLAST of MS025947 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS025947 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7G5DPY0	6.2e-05	35.48	Transcriptional regulator OS=Pseudomonas sp. MSPm1 OX=2726956 GN=HS968_01735 PE=...	[more]
A0A7V9XWB8	1.4e-04	32.41	ElaB/YqjD/DUF883 family membrane-anchored ribosome-binding protein OS=Pseudomona...	[more]
A0A7G7REB4	1.4e-04	32.41	Transcriptional regulator OS=Pseudomonas sediminis OX=1691904 GN=HNQ25_22940 PE=...	[more]
A0A7Z0FN85	5.3e-04	34.68	Uncharacterized protein YjbJ (UPF0337 family) OS=Pseudomonas mendocina OX=300 GN...	[more]

BLAST of MS025947 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..48

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS025947.1	MS025947.1	mRNA