MS025892 (gene) Bitter gourd (TR) v1

Overview


Name	MS025892
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	RING-type domain-containing protein
Location	scaffold391: 348461 .. 348670 (+)
RNA-Seq Expression	MS025892
Synteny	MS025892

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGCAGGTCGACAAGTAGCACGACGGATTTCTAGGCCAAGTGCTGCAGAGTTTGCTGCGGCTAGCTCATCACGCGAGCCTACAAAGAAAGATGCTTCTAAAGATAAAACCGGTCGACGAGCTAAAAGAGCTTTAAAACGGGAAGCTGCCGATAAAGCAGCAGCAGCAAAGCATCAGGAACATCTAGCTAGGTTGGGTCGGAATTGA

mRNA sequence

ATGGAGGCAGGTCGACAAGTAGCACGACGGATTTCTAGGCCAAGTGCTGCAGAGTTTGCTGCGGCTAGCTCATCACGCGAGCCTACAAAGAAAGATGCTTCTAAAGATAAAACCGGTCGACGAGCTAAAAGAGCTTTAAAACGGGAAGCTGCCGATAAAGCAGCAGCAGCAAAGCATCAGGAACATCTAGCTAGGTTGGGTCGGAATTGA

Coding sequence (CDS)

ATGGAGGCAGGTCGACAAGTAGCACGACGGATTTCTAGGCCAAGTGCTGCAGAGTTTGCTGCGGCTAGCTCATCACGCGAGCCTACAAAGAAAGATGCTTCTAAAGATAAAACCGGTCGACGAGCTAAAAGAGCTTTAAAACGGGAAGCTGCCGATAAAGCAGCAGCAGCAAAGCATCAGGAACATCTAGCTAGGTTGGGTCGGAATTGA

Protein sequence

MEAGRQVARRISRPSAAEFAAASSSREPTKKDASKDKTGRRAKRALKREAADKAAAAKHQEHLARLGRN

Homology

[Close]

BLAST of MS025892 vs. NCBI nr
Match: XP_022153003.1 (uncharacterized protein LOC111020607 [Momordica charantia])

HSP 1 Score: 105.5 bits (262), Expect = 1.8e-19
Identity = 62/69 (89.86%), Postives = 63/69 (91.30%), Query Frame = 0


Query: 1   MEAGRQVARRISRPSAAEFAAASSSREPTKKDASKDKTGRRAKRALKREAADKAAAAKHQ 60
           + AGRQ AR I RPS  EFAAASSSREPTKKDASKDKTGRRAKRALKREAADKAAAAKHQ
Sbjct: 175 VRAGRQEARPIFRPSVPEFAAASSSREPTKKDASKDKTGRRAKRALKREAADKAAAAKHQ 234

Query: 61  EHLARLGRN 70
           EHLARLGRN
Sbjct: 235 EHLARLGRN 243

[Close]

BLAST of MS025892 vs. NCBI nr
Match: XP_022987030.1 (uncharacterized protein LOC111484597 [Cucurbita maxima])

HSP 1 Score: 90.1 bits (222), Expect = 8.0e-15
Identity = 55/69 (79.71%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 1   MEAGRQVARRISRPSAAEFAAASSSREPTKKDASKDKTGRRAKRALKREAADKAAAAKHQ 60
           + AGRQ AR + RP   EF+ ASSSREPT KDASKDKTGRRAKRALKREAADKAAAAKHQ
Sbjct: 174 VRAGRQEARPVLRP---EFSGASSSREPTTKDASKDKTGRRAKRALKREAADKAAAAKHQ 233

Query: 61  EHLARLGRN 70
           EHLAR G N
Sbjct: 234 EHLARFGLN 239

[Close]

BLAST of MS025892 vs. NCBI nr
Match: XP_022943783.1 (uncharacterized protein LOC111448431 [Cucurbita moschata])

HSP 1 Score: 90.1 bits (222), Expect = 8.0e-15
Identity = 55/69 (79.71%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 1   MEAGRQVARRISRPSAAEFAAASSSREPTKKDASKDKTGRRAKRALKREAADKAAAAKHQ 60
           + AGRQ AR + RP   EF+ ASSSREPT KDASKDKTGRRAKRALKREAADKAAAAKHQ
Sbjct: 175 VRAGRQEARPVLRP---EFSGASSSREPTTKDASKDKTGRRAKRALKREAADKAAAAKHQ 234

Query: 61  EHLARLGRN 70
           EHLAR G N
Sbjct: 235 EHLARFGLN 240

[Close]

BLAST of MS025892 vs. NCBI nr
Match: KAG6605938.1 (hypothetical protein SDJN03_03255, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035883.1 hypothetical protein SDJN02_02682 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 88.6 bits (218), Expect = 2.3e-14
Identity = 53/68 (77.94%), Postives = 56/68 (82.35%), Query Frame = 0


Query: 1   MEAGRQVARRISRPSAAEFAAASSSREPTKKDASKDKTGRRAKRALKREAADKAAAAKHQ 60
           +  GRQ AR + R +    A ASSSREPTKKDASKDKTGRRAKRALKREAADKAAAAKHQ
Sbjct: 175 VRGGRQEARPVIRSTVPVHAGASSSREPTKKDASKDKTGRRAKRALKREAADKAAAAKHQ 234

Query: 61  EHLARLGR 69
           EHLAR GR
Sbjct: 235 EHLARFGR 242

[Close]

BLAST of MS025892 vs. NCBI nr
Match: XP_023511780.1 (uncharacterized protein LOC111776696 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 87.8 bits (216), Expect = 4.0e-14
Identity = 54/69 (78.26%), Postives = 57/69 (82.61%), Query Frame = 0


Query: 1   MEAGRQVARRISRPSAAEFAAASSSREPTKKDASKDKTGRRAKRALKREAADKAAAAKHQ 60
           + AGRQ AR + RP   EF+ ASSSREP  KDASKDKTGRRAKRALKREAADKAAAAKHQ
Sbjct: 175 VRAGRQEARPVLRP---EFSGASSSREPPTKDASKDKTGRRAKRALKREAADKAAAAKHQ 234

Query: 61  EHLARLGRN 70
           EHLAR G N
Sbjct: 235 EHLARFGLN 240

[Close]

BLAST of MS025892 vs. ExPASy TrEMBL
Match: A0A6J1DGD3 (uncharacterized protein LOC111020607 OS=Momordica charantia OX=3673 GN=LOC111020607 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 8.9e-20
Identity = 62/69 (89.86%), Postives = 63/69 (91.30%), Query Frame = 0


Query: 1   MEAGRQVARRISRPSAAEFAAASSSREPTKKDASKDKTGRRAKRALKREAADKAAAAKHQ 60
           + AGRQ AR I RPS  EFAAASSSREPTKKDASKDKTGRRAKRALKREAADKAAAAKHQ
Sbjct: 175 VRAGRQEARPIFRPSVPEFAAASSSREPTKKDASKDKTGRRAKRALKREAADKAAAAKHQ 234

Query: 61  EHLARLGRN 70
           EHLARLGRN
Sbjct: 235 EHLARLGRN 243

[Close]

BLAST of MS025892 vs. ExPASy TrEMBL
Match: A0A6J1JFP2 (uncharacterized protein LOC111484597 OS=Cucurbita maxima OX=3661 GN=LOC111484597 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.9e-15
Identity = 55/69 (79.71%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 1   MEAGRQVARRISRPSAAEFAAASSSREPTKKDASKDKTGRRAKRALKREAADKAAAAKHQ 60
           + AGRQ AR + RP   EF+ ASSSREPT KDASKDKTGRRAKRALKREAADKAAAAKHQ
Sbjct: 174 VRAGRQEARPVLRP---EFSGASSSREPTTKDASKDKTGRRAKRALKREAADKAAAAKHQ 233

Query: 61  EHLARLGRN 70
           EHLAR G N
Sbjct: 234 EHLARFGLN 239

[Close]

BLAST of MS025892 vs. ExPASy TrEMBL
Match: A0A6J1FXD4 (uncharacterized protein LOC111448431 OS=Cucurbita moschata OX=3662 GN=LOC111448431 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.9e-15
Identity = 55/69 (79.71%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 1   MEAGRQVARRISRPSAAEFAAASSSREPTKKDASKDKTGRRAKRALKREAADKAAAAKHQ 60
           + AGRQ AR + RP   EF+ ASSSREPT KDASKDKTGRRAKRALKREAADKAAAAKHQ
Sbjct: 175 VRAGRQEARPVLRP---EFSGASSSREPTTKDASKDKTGRRAKRALKREAADKAAAAKHQ 234

Query: 61  EHLARLGRN 70
           EHLAR G N
Sbjct: 235 EHLARFGLN 240

[Close]

BLAST of MS025892 vs. ExPASy TrEMBL
Match: A0A6J1K158 (uncharacterized protein LOC111490767 OS=Cucurbita maxima OX=3661 GN=LOC111490767 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.6e-14
Identity = 52/68 (76.47%), Postives = 55/68 (80.88%), Query Frame = 0


Query: 1   MEAGRQVARRISRPSAAEFAAASSSREPTKKDASKDKTGRRAKRALKREAADKAAAAKHQ 60
           +  GRQ AR + R +    A ASSSREP KKDASKDKTGRRAKRALKREAADKAAAAKHQ
Sbjct: 175 VRGGRQEARPVIRSTVPVHAGASSSREPIKKDASKDKTGRRAKRALKREAADKAAAAKHQ 234

Query: 61  EHLARLGR 69
           EHLAR GR
Sbjct: 235 EHLARFGR 242

[Close]

BLAST of MS025892 vs. ExPASy TrEMBL
Match: A0A6J1H396 (uncharacterized protein LOC111459609 OS=Cucurbita moschata OX=3662 GN=LOC111459609 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 9.5e-14
Identity = 52/68 (76.47%), Postives = 55/68 (80.88%), Query Frame = 0


Query: 1   MEAGRQVARRISRPSAAEFAAASSSREPTKKDASKDKTGRRAKRALKREAADKAAAAKHQ 60
           +  GRQ AR + R +    A ASSSREPTKKDASKDKTGRRAKRALKREAADKAAAAKHQ
Sbjct: 175 VRGGRQEARPVIRSTVPVHAGASSSREPTKKDASKDKTGRRAKRALKREAADKAAAAKHQ 234

Query: 61  EHLARLGR 69
           E LAR GR
Sbjct: 235 ERLARFGR 242

[Close]

BLAST of MS025892 vs. TAIR 10
Match: AT5G19430.1 (RING/U-box superfamily protein )

HSP 1 Score: 48.9 bits (115), Expect = 1.9e-06
Identity = 39/77 (50.65%), Postives = 51/77 (66.23%), Query Frame = 0


Query: 1   MEAGRQVARRISR----PSAAEFAAASSSREPTKKDA-SKDKTGRRAKRALKREAADKA- 60
           + +GRQ AR + R     S++  ++ SSS EP  K   + + TGRRAKRA+KREAA+KA 
Sbjct: 178 VRSGRQEARPVQRYSGSGSSSSSSSGSSSSEPKDKQVKTTNTTGRRAKRAMKREAANKAA 237

Query: 61  ---AAAKHQEHLARLGR 69
              AAAKH+ HL RLGR
Sbjct: 238 EVTAAAKHEAHLVRLGR 254

[Close]

BLAST of MS025892 vs. TAIR 10
Match: AT5G19430.2 (RING/U-box superfamily protein )

HSP 1 Score: 48.9 bits (115), Expect = 1.9e-06
Identity = 39/77 (50.65%), Postives = 51/77 (66.23%), Query Frame = 0


Query: 1   MEAGRQVARRISR----PSAAEFAAASSSREPTKKDA-SKDKTGRRAKRALKREAADKA- 60
           + +GRQ AR + R     S++  ++ SSS EP  K   + + TGRRAKRA+KREAA+KA 
Sbjct: 163 VRSGRQEARPVQRYSGSGSSSSSSSGSSSSEPKDKQVKTTNTTGRRAKRAMKREAANKAA 222

Query: 61  ---AAAKHQEHLARLGR 69
              AAAKH+ HL RLGR
Sbjct: 223 EVTAAAKHEAHLVRLGR 239

[Close]

BLAST of MS025892 vs. TAIR 10
Match: AT5G12310.1 (RING/U-box superfamily protein )

HSP 1 Score: 43.1 bits (100), Expect = 1.0e-04
Identity = 40/77 (51.95%), Postives = 49/77 (63.64%), Query Frame = 0


Query: 1   MEAGRQVARRISRPSAAEFA-----AASSSREPTKKDASKDKTGRRAKRALKREAADKA- 60
           + AGRQ AR +   +    A     A+SSS EP +K +S   TGRRAKRA+KREAA+KA 
Sbjct: 178 VRAGRQEARPVQHKNRGGQASGSEPASSSSCEPKEKTSSA-ITGRRAKRAMKREAANKAA 237

Query: 61  ---AAAKHQEHLARLGR 69
              AAAKH+  L RLGR
Sbjct: 238 EAVAAAKHEALLVRLGR 253

The following BLAST results are available for this feature:

BLAST of MS025892 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022153003.1	1.8e-19	89.86	uncharacterized protein LOC111020607 [Momordica charantia]	[more]
XP_022987030.1	8.0e-15	79.71	uncharacterized protein LOC111484597 [Cucurbita maxima]	[more]
XP_022943783.1	8.0e-15	79.71	uncharacterized protein LOC111448431 [Cucurbita moschata]	[more]
KAG6605938.1	2.3e-14	77.94	hypothetical protein SDJN03_03255, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023511780.1	4.0e-14	78.26	uncharacterized protein LOC111776696 [Cucurbita pepo subsp. pepo]	[more]

BLAST of MS025892 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS025892 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DGD3	8.9e-20	89.86	uncharacterized protein LOC111020607 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A6J1JFP2	3.9e-15	79.71	uncharacterized protein LOC111484597 OS=Cucurbita maxima OX=3661 GN=LOC111484597...	[more]
A0A6J1FXD4	3.9e-15	79.71	uncharacterized protein LOC111448431 OS=Cucurbita moschata OX=3662 GN=LOC1114484...	[more]
A0A6J1K158	5.6e-14	76.47	uncharacterized protein LOC111490767 OS=Cucurbita maxima OX=3661 GN=LOC111490767...	[more]
A0A6J1H396	9.5e-14	76.47	uncharacterized protein LOC111459609 OS=Cucurbita moschata OX=3662 GN=LOC1114596...	[more]

BLAST of MS025892 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19430.1	1.9e-06	50.65	RING/U-box superfamily protein	[more]
AT5G19430.2	1.9e-06	50.65	RING/U-box superfamily protein	[more]
AT5G12310.1	1.0e-04	51.95	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..69
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..69
None	No IPR available	PANTHER	PTHR47361:SF4	RING/U-BOX SUPERFAMILY PROTEIN	coord: 2..68
None	No IPR available	PANTHER	PTHR47361	RING/U-BOX SUPERFAMILY PROTEIN	coord: 2..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS025892.1	MS025892.1	mRNA