MS025890 (gene) Bitter gourd (TR) v1

Overview


Name	MS025890
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Glycine-rich RNA-binding family protein
Location	scaffold779: 603133 .. 606773 (+)
RNA-Seq Expression	MS025890
Synteny	MS025890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGGGAAGGACGAGTACCGAATATTTGTTGGAGGATTGTCATGGAACATCTCGGAGCGTCAGCTCGAGAACGCTTTCAGCCGCTACGGCAAAATCCTGGAAACTCAGGTAACTTTCGTCTTCCATGTTTTTCCCCTTTCATTATGCCTCATATTTGCTTATCGGTTGAGATGACGATGGAGAAAACGAAATCTGACCGCTATTCTGAATAGAACAAAAGATTCTGAATGTTTCGACATGCACGAGGTCTAATAGTGACGGTGTAAACGATTTTCTTGCGAGTAGTTTGTTTGTTTGTTTGTTTTTGGTAATGAAATTGGCTGCGTTTTGACGACATTCCTTGCAAATTATGAGTTTTTCTTTTCCATTATGCATGTCGGTGGTATTTTGTTAGTTGCATGCATGTCCGTTTATTTGTGTGTGTATAATATCTTTGTTCTAGTTCACGTTTCTTTATCGCTCATTTATTTATTTTTGGAAATAATGTGTACATGGACATTAGTAACATTCGGGATGTATTAGTTTATTAAGGCTAAAAGAATCAAAATACTCCCGATCAATTTTGCTTCCTAGATTATAACGATTAGTTTATCTCAGGCTTTCTCTTTCTTACCATAATTTGATCTTTTGTTATGTAGAATATGGTCCAGGGAGTCAGCTTAAAGCTGAATACATGAGTCTGTTCGTACATATAATTGAAGAAATGGTTAATACACAAGAAATCCCATCCATGACTATACATATATTGGAAGAAATTGTTTGGAAACTGGTAGTATTTTGAAAGAAAAGTATTCTCACAATAATGTTTCAGAAATTATTACTGATGCCTTCTCCTAGGACACCTGCTGAGATGTTTCTTCTGTTGACTATGGGGAGGAGAAATCATAGTTAACCAAATTTGCAAAACTCAATCAAGACCATTCACTTCCACAAGCAAAAATTTAATGTTCAACATACAGTTTGCTAATGTAGTTTCCAACTTATCAGAGTGTAAAGTGGATAATGTTTGTATTTCTTGGAGATCTATTTGGTCGATTTTATTGGGAATGTTTCTGCAATTTGTTGTAAGTAGTCCTAAATTCCTTGAGAATAATCCAAAGGTTCTAACTGGGGTATAAGCTGTTGGATTGAGCCAGATGCTTCTAGAAACTCTGATGTTCAGGTTCTTGTTGATTTACACCGGGCCTCCTATCTTAAAAGATTTTGCAAAGTATTCCATACCTAATGTTTGGTCCTTCTAGTTTCAAGAGCATGCAAGACTTATTTATCTTGCTTTCTGTTGCTTGATGCATCTATAAGGTTTAATCATGATCTTGCTCAGTCAGTGTTAATAGTGAGTTCATGCATTGGTGAGGGTATAAATTGTCATCTGCCTTGCTGGTGGCATGCCGTCTTGAGGTTCCTGCTTGACATTTGTGCATATCTTGGAATTGGAACTTCTTATAGTTTAATTAGGATATAGCATTCTAGCGTTCTAGTGCTTCCATATGTTCAGGATTTCTTTTGTGTGCTTTGGCATGGAAGAACATGCTATTGTCAAAATATTTAGTGTTAGTTCGACAGAGAAAAACTGACACTGTAATTTCAGTTATTCACCATCTCTACTGAATCTGTGAACATGCCCATGGTGACAAAAAGGGATTGTAATACGATTGTCACGTATATTGTTGCATGCTGAAGCTTCAGGTGCTAGACTTGTTTTGTTTGGTATGACATCCTGCAGCACACCAGCTTGCTTGGGTATTAGTGACTCCACAGTTAAATTGTACTGAAATCTCTTTTAGTTGTCAGTGCCGGCTTGTTCCATTTTAGACGACAAGATTTTGCAGTAAATGGGACATTGTAGAGATGTGACACCAGAATGCAGAATAATCTGAGTTAGAATTTTCTCTGTTGCTATTACATTTGTTGGCTGCTCAGTGAATCATAAAGGACAAACCTCAATTTACTGTGTAAGCTAAGAATAGCAGCTGAAGTGAGGACAGTATTTAATGCATTGTTGTGTTTTCGTCTAGTATGTGGCATTGAGTTGGGCAGTGGCATGGTGCAAAGAATCAAGTATTCGGTATGGCAAGAAGATATATCTCCTCAATATTTTTTCTTCTCAATTTGCTCATATAACCGGTGTCTAGACTCTAGAGTGATTTATATGTGACTGGGTTATGAACCGTGGAATGATGTCTGACTGCTACAATAATTTGTTAAAGGCTATGCAGCAGTGGTGGAGTAATTTCAGTAATCAGTAAAAGTGTTGCCTCGGGTGAATATCTCAAAGTGAGATAATCTCTAGTTAACTTGTAGAGCTTGAGATCCTGAGTTTATGATGGGACATTTCCTAGTTTGGACCCAAAGAGACTGTGGGAAGTAGAGGTCAAAGTTTCTCATTAAACGATAGATTTGGAGAGTTGAAGACAACTTGTGTGACAATTTTCAAGTTGTGGACACATTGCAGGGCTTTGAAGGGAAATCCTTCCAAGTGTATCATTAAAGTTGTTCCTTTGATGATATACTTGGGAAGGAGAAGTAAGTTGTCAGAATTTTTTTATTGTTTTACAATTTCCACTCTTTGCATAGCTATAATACTTTTCATAGTCTATGTGTTGGAATTGAACAACAATGTAGATATTGATTGATATTACATAATGTAAACTCTTTGCATGAGCTTCTCTTGTGGTGTTTATGTAGATCATGTTAGAACGAGATACAGGCCGTCCTCGTGGATTCGGTTTTATTACCTTTGCAGATCGTCGAGGGATGGATGATGCAATCAGGGAGATGCATGGGCGTGAGCTTGGTGAGAGGACTATCTCAGTAAATAAGGCTGAACCGAAGATGGAGGGAGATGATGGAGAACCAGGCTTTAGGGGAGGAGGCTATTCATCTGGTGGTAGGCCCAGTTTTGGGAGAGGAGGAGATAGATCTGTGGGGCAAGATGAATGCTTCAAGTGTGGACGCCCAGGACATTGGGCACGAGATTGCCCATCAGTTGGTGGTGGACGAGGTAGGGGTAGAGGTTCATTTTCATCCCGTTCTCGATTTGATAGTGATAGTCGTGGAGATCGTTTTGGAGGAGATCGGGACCGATATGTGGATGACCGCTATGATGGAGGGCGATATGGAGATAGAGATCGTTTTGACCGTAGAGATGACAAGTATGGAAGTCGAGACCGCTATTTTGATGACAGGTAGTTTTACATCTTTTATTTGTTCTATGTGAATTGTGGTGTTGAGATAAGGTGAGCATCTTCCTACATGTCTAATACAAAAACTACATATGTTCTCTCTCAAAGTGTGATTTGATTGACACGTTACCGAAGTAGTAGCTAAGACTCTGTTTATAAAAAAAAGCACTGGAAATTCTTTATAACTGAGATTTTGTTTGCAAACTCTGTAGGTACCCGTCTGGTGGAGATCGCTTTGCTGGTGGTGATAGGTATGATGTTAGCGATCGTTATCCTCAAAACGGCTATGTTAAAGACAGAGGCGGGTACGATAGGGACATTGGTCCTAGGAGTGGCAGTGATAGGTATGGAAGCGGAGGTCCAGGCCGTTACGAGGGAAGAAGTTATAGAGATAGGGCAGGTCCTTACGACCGCCCAAGCAGGGGAGGACGGCCGTCTTCCTACGAGCGCTATTAA

mRNA sequence

ATGGCTGGGAAGGACGAGTACCGAATATTTGTTGGAGGATTGTCATGGAACATCTCGGAGCGTCAGCTCGAGAACGCTTTCAGCCGCTACGGCAAAATCCTGGAAACTCAGATCATGTTAGAACGAGATACAGGCCGTCCTCGTGGATTCGGTTTTATTACCTTTGCAGATCGTCGAGGGATGGATGATGCAATCAGGGAGATGCATGGGCGTGAGCTTGGTGAGAGGACTATCTCAGTAAATAAGGCTGAACCGAAGATGGAGGGAGATGATGGAGAACCAGGCTTTAGGGGAGGAGGCTATTCATCTGGTGGTAGGCCCAGTTTTGGGAGAGGAGGAGATAGATCTGTGGGGCAAGATGAATGCTTCAAGTGTGGACGCCCAGGACATTGGGCACGAGATTGCCCATCAGTTGGTGGTGGACGAGGTAGGGGTAGAGGTTCATTTTCATCCCGTTCTCGATTTGATAGTGATAGTCGTGGAGATCGTTTTGGAGGAGATCGGGACCGATATGTGGATGACCGCTATGATGGAGGGCGATATGGAGATAGAGATCGTTTTGACCGTAGAGATGACAAGTATGGAAGTCGAGACCGCTATTTTGATGACAGGTACCCGTCTGGTGGAGATCGCTTTGCTGGTGGTGATAGGTATGATGTTAGCGATCGTTATCCTCAAAACGGCTATGTTAAAGACAGAGGCGGGTACGATAGGGACATTGGTCCTAGGAGTGGCAGTGATAGGTATGGAAGCGGAGGTCCAGGCCGTTACGAGGGAAGAAGTTATAGAGATAGGGCAGGTCCTTACGACCGCCCAAGCAGGGGAGGACGGCCGTCTTCCTACGAGCGCTATTAA

Coding sequence (CDS)

ATGGCTGGGAAGGACGAGTACCGAATATTTGTTGGAGGATTGTCATGGAACATCTCGGAGCGTCAGCTCGAGAACGCTTTCAGCCGCTACGGCAAAATCCTGGAAACTCAGATCATGTTAGAACGAGATACAGGCCGTCCTCGTGGATTCGGTTTTATTACCTTTGCAGATCGTCGAGGGATGGATGATGCAATCAGGGAGATGCATGGGCGTGAGCTTGGTGAGAGGACTATCTCAGTAAATAAGGCTGAACCGAAGATGGAGGGAGATGATGGAGAACCAGGCTTTAGGGGAGGAGGCTATTCATCTGGTGGTAGGCCCAGTTTTGGGAGAGGAGGAGATAGATCTGTGGGGCAAGATGAATGCTTCAAGTGTGGACGCCCAGGACATTGGGCACGAGATTGCCCATCAGTTGGTGGTGGACGAGGTAGGGGTAGAGGTTCATTTTCATCCCGTTCTCGATTTGATAGTGATAGTCGTGGAGATCGTTTTGGAGGAGATCGGGACCGATATGTGGATGACCGCTATGATGGAGGGCGATATGGAGATAGAGATCGTTTTGACCGTAGAGATGACAAGTATGGAAGTCGAGACCGCTATTTTGATGACAGGTACCCGTCTGGTGGAGATCGCTTTGCTGGTGGTGATAGGTATGATGTTAGCGATCGTTATCCTCAAAACGGCTATGTTAAAGACAGAGGCGGGTACGATAGGGACATTGGTCCTAGGAGTGGCAGTGATAGGTATGGAAGCGGAGGTCCAGGCCGTTACGAGGGAAGAAGTTATAGAGATAGGGCAGGTCCTTACGACCGCCCAAGCAGGGGAGGACGGCCGTCTTCCTACGAGCGCTATTAA

Protein sequence

MAGKDEYRIFVGGLSWNISERQLENAFSRYGKILETQIMLERDTGRPRGFGFITFADRRGMDDAIREMHGRELGERTISVNKAEPKMEGDDGEPGFRGGGYSSGGRPSFGRGGDRSVGQDECFKCGRPGHWARDCPSVGGGRGRGRGSFSSRSRFDSDSRGDRFGGDRDRYVDDRYDGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSGGDRFAGGDRYDVSDRYPQNGYVKDRGGYDRDIGPRSGSDRYGSGGPGRYEGRSYRDRAGPYDRPSRGGRPSSYERY

Homology

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BLAST of MS025890 vs. NCBI nr
Match: XP_022133790.1 (glycine-rich RNA-binding protein RZ1C-like isoform X1 [Momordica charantia])

HSP 1 Score: 571.2 bits (1471), Expect = 4.8e-159
Identity = 282/284 (99.30%), Postives = 283/284 (99.65%), Query Frame = 0


Query: 1   MAGKDEYRIFVGGLSWNISERQLENAFSRYGKILETQIMLERDTGRPRGFGFITFADRRG 60
           MAGKDEYRIFVGGLSWNISERQLENAFSRYGKILETQIMLERDTGRPRGFGFITFADRRG
Sbjct: 1   MAGKDEYRIFVGGLSWNISERQLENAFSRYGKILETQIMLERDTGRPRGFGFITFADRRG 60

Query: 61  MDDAIREMHGRELGERTISVNKAEPKMEGDDGEPGFRGGGYSSGGRPSFGRGGDRSVGQD 120
           MDDAIREMHGRELGERTISVNKAEPKMEGDDGEPGFRGGGYSSGGRPSFGRGGDRSVGQD
Sbjct: 61  MDDAIREMHGRELGERTISVNKAEPKMEGDDGEPGFRGGGYSSGGRPSFGRGGDRSVGQD 120

Query: 121 ECFKCGRPGHWARDCPSVGGGRGRGRGSFSSRSRFDSDSRGDRFGGDRDRYVDDRYDGGR 180
           ECFKCGRPGHWARDCPSVGGGRGRGRGSFSSRSRFDSDSRGDRFGGDRDRYVDDRYDGGR
Sbjct: 121 ECFKCGRPGHWARDCPSVGGGRGRGRGSFSSRSRFDSDSRGDRFGGDRDRYVDDRYDGGR 180

Query: 181 YGDRDRFDRRDDKYGSRDRYFDDRYPSGGDRFAGGDRYDVSDRYPQNGYVKDRGGYDRDI 240
           YGDRD FDRRDDKYGSRDRYFDDRYPSGGDRFAGGDRYDVSDRYPQNGYVKDRGGY+RDI
Sbjct: 181 YGDRDHFDRRDDKYGSRDRYFDDRYPSGGDRFAGGDRYDVSDRYPQNGYVKDRGGYNRDI 240

Query: 241 GPRSGSDRYGSGGPGRYEGRSYRDRAGPYDRPSRGGRPSSYERY 285
           GPRSGSDRYGSGGPGRYEGRSYRDRAGPYDRPSRGGRPSSYERY
Sbjct: 241 GPRSGSDRYGSGGPGRYEGRSYRDRAGPYDRPSRGGRPSSYERY 284

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BLAST of MS025890 vs. NCBI nr
Match: KAG6602289.1 (Glycine-rich RNA-binding protein RZ1C, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 539.7 bits (1389), Expect = 1.6e-149
Identity = 270/289 (93.43%), Postives = 274/289 (94.81%), Query Frame = 0


Query: 1   MAGKDEYRIFVGGLSWNISERQLENAFSRYGKILETQIMLERDTGRPRGFGFITFADRRG 60
           MA KDEYRIFVGGLSWN+SER+LENAFSRYGKI+ETQIMLERDTGRPRGFGFITFADRRG
Sbjct: 1   MAAKDEYRIFVGGLSWNVSERELENAFSRYGKIIETQIMLERDTGRPRGFGFITFADRRG 60

Query: 61  MDDAIREMHGRELGERTISVNKAEPKMEGDDGEPGFRGGGYSSGGRPSFGRGGDRSVGQD 120
           MDDAIREMHG E GER ISVNKAEPKMEGDD EPGFRGGGYSSGGR SFGRGGDRSVGQD
Sbjct: 61  MDDAIREMHGHEFGERIISVNKAEPKMEGDDREPGFRGGGYSSGGRASFGRGGDRSVGQD 120

Query: 121 ECFKCGRPGHWARDCPSVGGGRGRGRGSFSSRSRFDSDSRGDRFGGDRDRYVDDRY---- 180
           ECFKCGRPGHWARDCPS GGGRGRGRGSFSSRSRFD DSRGDRFGGDRDRYVDDRY    
Sbjct: 121 ECFKCGRPGHWARDCPSAGGGRGRGRGSFSSRSRFDGDSRGDRFGGDRDRYVDDRYDGGR 180

Query: 181 DGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSGGDRFAGGDRYDVSDRYPQNGYVKDRGGY 240
           DGGRYGDRDRFDRRDDKYGSRDRYFDDRYPS GDRFAGGDRYDVSDRYPQNGYVKDRGGY
Sbjct: 181 DGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFAGGDRYDVSDRYPQNGYVKDRGGY 240

Query: 241 DRDIGPRSGSDRYGS-GGPGRYEGRSYRDRAGPYDRPSRGGRPSSYERY 285
           DRDIGPRSGSDRYG+ GGPGRYEGRSYRDR GPYDRPSRGGRPSSYERY
Sbjct: 241 DRDIGPRSGSDRYGTGGGPGRYEGRSYRDRPGPYDRPSRGGRPSSYERY 289

[Close]

BLAST of MS025890 vs. NCBI nr
Match: XP_022990423.1 (glycine-rich RNA-binding protein RZ1C [Cucurbita maxima] >XP_022990424.1 glycine-rich RNA-binding protein RZ1C [Cucurbita maxima])

HSP 1 Score: 538.5 bits (1386), Expect = 3.5e-149
Identity = 269/289 (93.08%), Postives = 274/289 (94.81%), Query Frame = 0


Query: 1   MAGKDEYRIFVGGLSWNISERQLENAFSRYGKILETQIMLERDTGRPRGFGFITFADRRG 60
           MA KDEYRIFVGGLSWN+SER+LENAFSRYGKI+ETQIMLERDTGRPRGFGFITFADRRG
Sbjct: 1   MAAKDEYRIFVGGLSWNVSERELENAFSRYGKIIETQIMLERDTGRPRGFGFITFADRRG 60

Query: 61  MDDAIREMHGRELGERTISVNKAEPKMEGDDGEPGFRGGGYSSGGRPSFGRGGDRSVGQD 120
           MDDAIREMHG E GER ISVNKAEPKMEGDD EPGFRGGGYSSGGR SFGRGGDRSVGQD
Sbjct: 61  MDDAIREMHGHEFGERIISVNKAEPKMEGDDREPGFRGGGYSSGGRASFGRGGDRSVGQD 120

Query: 121 ECFKCGRPGHWARDCPSVGGGRGRGRGSFSSRSRFDSDSRGDRFGGDRDRYVDDRY---- 180
           ECFKCGRPGHWARDCPS GGGRGRGRGSFSSRSRFD DSRGDRFGGDRDRYVDDRY    
Sbjct: 121 ECFKCGRPGHWARDCPSAGGGRGRGRGSFSSRSRFDGDSRGDRFGGDRDRYVDDRYDGGR 180

Query: 181 DGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSGGDRFAGGDRYDVSDRYPQNGYVKDRGGY 240
           DGGRYGDRDRFDRRDDKYGSRDRYFDDRYPS GDRFAGGDRYDVSDRYPQNGYVKDRGGY
Sbjct: 181 DGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFAGGDRYDVSDRYPQNGYVKDRGGY 240

Query: 241 DRDIGPRSGSDRYGS-GGPGRYEGRSYRDRAGPYDRPSRGGRPSSYERY 285
           DRDIGPRSGSDRYG+ GGPGRYEGR+YRDR GPYDRPSRGGRPSSYERY
Sbjct: 241 DRDIGPRSGSDRYGTGGGPGRYEGRNYRDRPGPYDRPSRGGRPSSYERY 289

[Close]

BLAST of MS025890 vs. NCBI nr
Match: XP_022961758.1 (glycine-rich RNA-binding protein RZ1C-like [Cucurbita moschata] >XP_022961766.1 glycine-rich RNA-binding protein RZ1C-like [Cucurbita moschata])

HSP 1 Score: 538.1 bits (1385), Expect = 4.5e-149
Identity = 269/289 (93.08%), Postives = 273/289 (94.46%), Query Frame = 0


Query: 1   MAGKDEYRIFVGGLSWNISERQLENAFSRYGKILETQIMLERDTGRPRGFGFITFADRRG 60
           MA KDEYRIFVGGLSWN+SER+LENAFSRYGKI+ETQIMLERDTGRPRGFGFITFADRRG
Sbjct: 1   MAAKDEYRIFVGGLSWNVSERELENAFSRYGKIIETQIMLERDTGRPRGFGFITFADRRG 60

Query: 61  MDDAIREMHGRELGERTISVNKAEPKMEGDDGEPGFRGGGYSSGGRPSFGRGGDRSVGQD 120
           MDDAIREMHG E GER ISVNKAEPKMEGDD EPGFRGGGYSSGGR SFGRGGDRSVGQD
Sbjct: 61  MDDAIREMHGHEFGERIISVNKAEPKMEGDDREPGFRGGGYSSGGRASFGRGGDRSVGQD 120

Query: 121 ECFKCGRPGHWARDCPSVGGGRGRGRGSFSSRSRFDSDSRGDRFGGDRDRYVDDRY---- 180
           ECFKCGRPGHWARDCPS GGGRGRGRGSFSSRSRFD DSRGDRFGGDRDRYVDDRY    
Sbjct: 121 ECFKCGRPGHWARDCPSAGGGRGRGRGSFSSRSRFDGDSRGDRFGGDRDRYVDDRYDGGR 180

Query: 181 DGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSGGDRFAGGDRYDVSDRYPQNGYVKDRGGY 240
           DGGRYGDRDRFDRRDDKYGSRDRYFDDRYPS GDRF GGDRYDVSDRYPQNGYVKDRGGY
Sbjct: 181 DGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFTGGDRYDVSDRYPQNGYVKDRGGY 240

Query: 241 DRDIGPRSGSDRYGS-GGPGRYEGRSYRDRAGPYDRPSRGGRPSSYERY 285
           DRDIGPRSGSDRYG+ GGPGRYEGRSYRDR GPYDRPSRGGRPSSYERY
Sbjct: 241 DRDIGPRSGSDRYGTGGGPGRYEGRSYRDRPGPYDRPSRGGRPSSYERY 289

[Close]

BLAST of MS025890 vs. NCBI nr
Match: XP_023544240.1 (glycine-rich RNA-binding protein RZ1C [Cucurbita pepo subsp. pepo] >XP_023544248.1 glycine-rich RNA-binding protein RZ1C [Cucurbita pepo subsp. pepo])

HSP 1 Score: 536.6 bits (1381), Expect = 1.3e-148
Identity = 268/289 (92.73%), Postives = 274/289 (94.81%), Query Frame = 0


Query: 1   MAGKDEYRIFVGGLSWNISERQLENAFSRYGKILETQIMLERDTGRPRGFGFITFADRRG 60
           MA KDEYRIFVGGLSWN+SER+LENAFSRYGKI+ETQIMLERDTGRPRGFGFITFADRRG
Sbjct: 1   MAAKDEYRIFVGGLSWNVSERELENAFSRYGKIIETQIMLERDTGRPRGFGFITFADRRG 60

Query: 61  MDDAIREMHGRELGERTISVNKAEPKMEGDDGEPGFRGGGYSSGGRPSFGRGGDRSVGQD 120
           MDDAIREMHG E GER ISVNKAEPKMEGDD EPGFRGGGYSSGGR SFGRGGDRSVGQD
Sbjct: 61  MDDAIREMHGHEFGERIISVNKAEPKMEGDDREPGFRGGGYSSGGRASFGRGGDRSVGQD 120

Query: 121 ECFKCGRPGHWARDCPSVGGGRGRGRGSFSSRSRFDSDSRGDRFGGDRDRYVDDRY---- 180
           ECFKCGRPGHWARDCPS GGGRGRGRGSFSSRSRFD DSRGDRFGGDRDRYVDDRY    
Sbjct: 121 ECFKCGRPGHWARDCPSTGGGRGRGRGSFSSRSRFDGDSRGDRFGGDRDRYVDDRYDGGR 180

Query: 181 DGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSGGDRFAGGDRYDVSDRYPQNGYVKDRGGY 240
           DGGRYGDRDRFDRRDDKYGSRDRYF+DRYPS GDRFAGGDRYDVSDRYPQNGYVK+RGGY
Sbjct: 181 DGGRYGDRDRFDRRDDKYGSRDRYFEDRYPSAGDRFAGGDRYDVSDRYPQNGYVKERGGY 240

Query: 241 DRDIGPRSGSDRYGS-GGPGRYEGRSYRDRAGPYDRPSRGGRPSSYERY 285
           DRDIGPRSGSDRYG+ GGPGRYEGRSYRDR GPYDRPSRGGRPSSYERY
Sbjct: 241 DRDIGPRSGSDRYGTGGGPGRYEGRSYRDRPGPYDRPSRGGRPSSYERY 289

[Close]

BLAST of MS025890 vs. ExPASy Swiss-Prot
Match: Q8RWN5 (Glycine-rich RNA-binding protein RZ1C OS=Arabidopsis thaliana OX=3702 GN=RZ1C PE=1 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 2.1e-80
Identity = 186/303 (61.39%), Postives = 213/303 (70.30%), Query Frame = 0


Query: 1   MAGKDEYRIFVGGLSWNISERQLENAFSRYGKILETQIMLERDTGRPRGFGFITFADRRG 60
           MA K+  RIFVGGLS  +++R LE AFSR+G IL+ QIMLERDTGR RGFGFITFADRR 
Sbjct: 1   MAAKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRA 60

Query: 61  MDDAIREMHGRELGERTISVNKAEPKMEGDDGEP-GFRGG---GYSSGGRPSFGRGGDRS 120
           MD++IREMHGR+ G+R ISVN+AEPK+  DDGE  G RGG   GYS  G+ SFG GG   
Sbjct: 61  MDESIREMHGRDFGDRVISVNRAEPKLGRDDGESHGSRGGRDSGYSIAGKGSFGGGGGGG 120

Query: 121 --VGQDECFKCGRPGHWARDCPSVGGGRGRGRGSFSSRSRF--DSDSRGDRFGG-----D 180
             VG+DECFKCGR GHWARDCPS GGGRG   G FSSR+     SD R DR+       D
Sbjct: 121 GRVGEDECFKCGRVGHWARDCPSAGGGRGGPVGGFSSRASAYGGSDGRVDRYADRDRYVD 180

Query: 181 RDRYVDDRYDG-GRYGDRDRFDRRDDKYGSRDRYFDDRYPSGGDRFAGGDRYD-VSDRYP 240
           R+RY+DDRYDG  RYG RDRFD R + Y  RDRY  DRY +  DRFAGGDRY   SDRYP
Sbjct: 181 RERYIDDRYDGAARYGARDRFDSR-EAYIPRDRYASDRYAAPADRFAGGDRYSRGSDRYP 240

Query: 241 QNGYVKDRGGYDRDIGPRSGSDRYG---SGGP---GRYEGRSYRDRAG-PYDRPSRGGRP 282
              Y K R  ++RDI P +GSDRYG   +GGP   G  EGR +R RAG PY+RPSR G  
Sbjct: 241 PGSYDKAR-SFERDIAPSAGSDRYGGGRAGGPIRGGGEEGRGFRSRAGAPYERPSRSGGG 300

[Close]

BLAST of MS025890 vs. ExPASy Swiss-Prot
Match: O22703 (Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana OX=3702 GN=RZ1B PE=2 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 3.2e-73
Identity = 170/297 (57.24%), Postives = 194/297 (65.32%), Query Frame = 0


Query: 3   GKDEYRIFVGGLSWNISERQLENAFSRYGKILETQIMLERDTGRPRGFGFITFADRRGMD 62
           G  E RIFVGGLSW+++ERQLE+ F RYGKI E QIM+ RDTGRPRGFGFITF DRRG D
Sbjct: 8   GNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGAD 67

Query: 63  DAIREMHGRELGERTISVNKAEPKMEGDDGEPGFRGGGYSSGGRPSFGRGGDRSVGQDEC 122
           DAI+ MHGRELG + ISVNKAEPK+ G+D +   +GGGYSS G+ +          +DEC
Sbjct: 68  DAIKHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGT----------EDEC 127

Query: 123 FKCGRPGHWARDCPSVGGGRGRGRGSFSSRSRF-DSDSRGDRFGG-----------DRDR 182
           FKC RPGHWARDCPS G  R R R   + RSR  D D   DR+G            + DR
Sbjct: 128 FKCRRPGHWARDCPSTGDDRERFRVPLAMRSRIGDIDGHRDRYGDRDLEREREREREFDR 187

Query: 183 YVDDR--YDGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSGGDRFAGGDRYDVSDRYPQNG 242
           Y+D R   DGGRY  RDRFD   DKY  RD Y  +RY   GDRF   DRY + + + +N 
Sbjct: 188 YMDGRRDRDGGRYSYRDRFD-SGDKYEPRDHYPFERYAPPGDRFV-SDRYGMPEHHLENE 247

Query: 243 YVKDRGGYDRDIGPRSGSDRYGSGGPGRYEGRSYRDRAGPYDRPSR-GGRPSSYERY 285
           Y      YDRD   R  SDRYG  GP R EGR YR R GPYDRPSR GGRPSSYER+
Sbjct: 248 YRGRERSYDRDRYARDTSDRYGDMGPIRDEGRPYRSRPGPYDRPSRPGGRPSSYERW 292

[Close]

BLAST of MS025890 vs. ExPASy Swiss-Prot
Match: Q9LIN3 (Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana OX=3702 GN=RZ1A PE=1 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.3e-37
Identity = 115/282 (40.78%), Postives = 153/282 (54.26%), Query Frame = 0


Query: 1   MAGKDEYRIFVGGLSWNISERQLENAFSRYGKILETQIMLERDTGRPRGFGFITFADRRG 60
           M+   EYR F+GGL+W  S+R L +AF +YG ++E +++L++ +GR RGFGFITF +++ 
Sbjct: 1   MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60

Query: 61  MDDAIREMHGRELGERTISVNKAEPKMEG----DDGEPGFRGGGYSSGGRPSFGRGGDRS 120
           MD+AI  M+G +L  RTI+V+KA+P   G    +DG+ G   G      RPS GRGG   
Sbjct: 61  MDEAIAAMNGMDLDGRTITVDKAQPHQGGAGRDNDGDRGRDRGYDRDRSRPSGGRGG--- 120

Query: 121 VGQDECFKCGRPGHWARDCPSVGGGRGRGRGSFSSRSRFDSDSRGDRFGGDRDRY--VDD 180
               +CFKCG+PGH+AR+CPS     G GR S          S+ DR+    DRY   DD
Sbjct: 121 ---GDCFKCGKPGHFARECPSESSRDGGGRFS----------SKDDRYSSKDDRYGAKDD 180

Query: 181 RYDGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSGGDRFAGGDRYDVSDRYPQNGYVKDRG 240
           RY        DR+  +DD+Y S+    DDRY S  DR+  G R     RY  +   +  G
Sbjct: 181 RYG----AKEDRYGAKDDRYSSK----DDRYSSKDDRY--GSRDGGGSRYGPDRSGERAG 240

Query: 241 GYDRDIGPRSGSDRYGSGGPGRYEGRSYRDRAGPYDRPSRGG 277
           G  RD G R        G PG       R    PYDRP  GG
Sbjct: 241 GRSRDGGSR--------GAPG-----GERHSRAPYDRPRAGG 243

[Close]

BLAST of MS025890 vs. ExPASy Swiss-Prot
Match: P49310 (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 6.8e-23
Identity = 77/183 (42.08%), Postives = 103/183 (56.28%), Query Frame = 0


Query: 1   MAGKD-EYRIFVGGLSWNISERQLENAFSRYGKILETQIMLERDTGRPRGFGFITFADRR 60
           MA  D EYR FVGGL+W   +R LE AFS+YG++L+++I+ +R+TGR RGFGF+TF D +
Sbjct: 1   MASPDVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 61  GMDDAIREMHGRELGERTISVNKAEPKMEGDDGEPGFRGGGYSSGGRPSFGRGGDRSVGQ 120
            M DAI  M+G++L  R+I+VN+A+ +  G  G     GGGY SGG   +G GG      
Sbjct: 61  SMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGGRGGGGGYRSGGGGGYGGGG------ 120

Query: 121 DECFKCGRPGHWARDCPSVGGGRGRGRGSFSSRSRFDSDSRGDRFGGDRDRYVDDRYDGG 180
                 G  G   R+     GG   G G +SSR        G  +GG   R   D  +GG
Sbjct: 121 ------GGYGGGGRE-----GGYSGGGGGYSSRG-----GGGGGYGGGGRR---DGGEGG 158

Query: 181 RYG 183
            YG
Sbjct: 181 GYG 158

[Close]

BLAST of MS025890 vs. ExPASy Swiss-Prot
Match: Q03250 (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana OX=3702 GN=RBG7 PE=1 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.0e-22
Identity = 74/182 (40.66%), Postives = 101/182 (55.49%), Query Frame = 0


Query: 2   AGKDEYRIFVGGLSWNISERQLENAFSRYGKILETQIMLERDTGRPRGFGFITFADRRGM 61
           +G  EYR FVGGL+W   +R LE AF++YG +++++I+ +R+TGR RGFGF+TF D + M
Sbjct: 3   SGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAM 62

Query: 62  DDAIREMHGRELGERTISVNKAEPK-MEGDDGEPGFRGGGYSSGGRPSFGRGGDRSVGQD 121
            DAI  M+G++L  R+I+VN+A+ +   G  G  G  GGGY SGG   +  GG    G  
Sbjct: 63  KDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGHRGGGGGGYRSGGGGGYSGGGGSYGG-- 122

Query: 122 ECFKCGRPGHWARDCPSVGGGRGRGRGSFSSRSRFDSDSRGDRFGGDRDRYVDDRYDGGR 181
                   G   R+    GGG   G G +SSR        G  +GG R      R  GG 
Sbjct: 123 --------GGGRRE---GGGGYSGGGGGYSSRG-----GGGGSYGGGR------REGGGG 160

Query: 182 YG 183
           YG
Sbjct: 183 YG 160

[Close]

BLAST of MS025890 vs. ExPASy TrEMBL
Match: A0A6J1BW89 (glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111006270 PE=4 SV=1)

HSP 1 Score: 571.2 bits (1471), Expect = 2.3e-159
Identity = 282/284 (99.30%), Postives = 283/284 (99.65%), Query Frame = 0


Query: 1   MAGKDEYRIFVGGLSWNISERQLENAFSRYGKILETQIMLERDTGRPRGFGFITFADRRG 60
           MAGKDEYRIFVGGLSWNISERQLENAFSRYGKILETQIMLERDTGRPRGFGFITFADRRG
Sbjct: 1   MAGKDEYRIFVGGLSWNISERQLENAFSRYGKILETQIMLERDTGRPRGFGFITFADRRG 60

Query: 61  MDDAIREMHGRELGERTISVNKAEPKMEGDDGEPGFRGGGYSSGGRPSFGRGGDRSVGQD 120
           MDDAIREMHGRELGERTISVNKAEPKMEGDDGEPGFRGGGYSSGGRPSFGRGGDRSVGQD
Sbjct: 61  MDDAIREMHGRELGERTISVNKAEPKMEGDDGEPGFRGGGYSSGGRPSFGRGGDRSVGQD 120

Query: 121 ECFKCGRPGHWARDCPSVGGGRGRGRGSFSSRSRFDSDSRGDRFGGDRDRYVDDRYDGGR 180
           ECFKCGRPGHWARDCPSVGGGRGRGRGSFSSRSRFDSDSRGDRFGGDRDRYVDDRYDGGR
Sbjct: 121 ECFKCGRPGHWARDCPSVGGGRGRGRGSFSSRSRFDSDSRGDRFGGDRDRYVDDRYDGGR 180

Query: 181 YGDRDRFDRRDDKYGSRDRYFDDRYPSGGDRFAGGDRYDVSDRYPQNGYVKDRGGYDRDI 240
           YGDRD FDRRDDKYGSRDRYFDDRYPSGGDRFAGGDRYDVSDRYPQNGYVKDRGGY+RDI
Sbjct: 181 YGDRDHFDRRDDKYGSRDRYFDDRYPSGGDRFAGGDRYDVSDRYPQNGYVKDRGGYNRDI 240

Query: 241 GPRSGSDRYGSGGPGRYEGRSYRDRAGPYDRPSRGGRPSSYERY 285
           GPRSGSDRYGSGGPGRYEGRSYRDRAGPYDRPSRGGRPSSYERY
Sbjct: 241 GPRSGSDRYGSGGPGRYEGRSYRDRAGPYDRPSRGGRPSSYERY 284

[Close]

BLAST of MS025890 vs. ExPASy TrEMBL
Match: A0A6J1JS04 (glycine-rich RNA-binding protein RZ1C OS=Cucurbita maxima OX=3661 GN=LOC111487287 PE=4 SV=1)

HSP 1 Score: 538.5 bits (1386), Expect = 1.7e-149
Identity = 269/289 (93.08%), Postives = 274/289 (94.81%), Query Frame = 0


Query: 1   MAGKDEYRIFVGGLSWNISERQLENAFSRYGKILETQIMLERDTGRPRGFGFITFADRRG 60
           MA KDEYRIFVGGLSWN+SER+LENAFSRYGKI+ETQIMLERDTGRPRGFGFITFADRRG
Sbjct: 1   MAAKDEYRIFVGGLSWNVSERELENAFSRYGKIIETQIMLERDTGRPRGFGFITFADRRG 60

Query: 61  MDDAIREMHGRELGERTISVNKAEPKMEGDDGEPGFRGGGYSSGGRPSFGRGGDRSVGQD 120
           MDDAIREMHG E GER ISVNKAEPKMEGDD EPGFRGGGYSSGGR SFGRGGDRSVGQD
Sbjct: 61  MDDAIREMHGHEFGERIISVNKAEPKMEGDDREPGFRGGGYSSGGRASFGRGGDRSVGQD 120

Query: 121 ECFKCGRPGHWARDCPSVGGGRGRGRGSFSSRSRFDSDSRGDRFGGDRDRYVDDRY---- 180
           ECFKCGRPGHWARDCPS GGGRGRGRGSFSSRSRFD DSRGDRFGGDRDRYVDDRY    
Sbjct: 121 ECFKCGRPGHWARDCPSAGGGRGRGRGSFSSRSRFDGDSRGDRFGGDRDRYVDDRYDGGR 180

Query: 181 DGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSGGDRFAGGDRYDVSDRYPQNGYVKDRGGY 240
           DGGRYGDRDRFDRRDDKYGSRDRYFDDRYPS GDRFAGGDRYDVSDRYPQNGYVKDRGGY
Sbjct: 181 DGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFAGGDRYDVSDRYPQNGYVKDRGGY 240

Query: 241 DRDIGPRSGSDRYGS-GGPGRYEGRSYRDRAGPYDRPSRGGRPSSYERY 285
           DRDIGPRSGSDRYG+ GGPGRYEGR+YRDR GPYDRPSRGGRPSSYERY
Sbjct: 241 DRDIGPRSGSDRYGTGGGPGRYEGRNYRDRPGPYDRPSRGGRPSSYERY 289

[Close]

BLAST of MS025890 vs. ExPASy TrEMBL
Match: A0A6J1HB93 (glycine-rich RNA-binding protein RZ1C-like OS=Cucurbita moschata OX=3662 GN=LOC111462429 PE=4 SV=1)

HSP 1 Score: 538.1 bits (1385), Expect = 2.2e-149
Identity = 269/289 (93.08%), Postives = 273/289 (94.46%), Query Frame = 0


Query: 1   MAGKDEYRIFVGGLSWNISERQLENAFSRYGKILETQIMLERDTGRPRGFGFITFADRRG 60
           MA KDEYRIFVGGLSWN+SER+LENAFSRYGKI+ETQIMLERDTGRPRGFGFITFADRRG
Sbjct: 1   MAAKDEYRIFVGGLSWNVSERELENAFSRYGKIIETQIMLERDTGRPRGFGFITFADRRG 60

Query: 61  MDDAIREMHGRELGERTISVNKAEPKMEGDDGEPGFRGGGYSSGGRPSFGRGGDRSVGQD 120
           MDDAIREMHG E GER ISVNKAEPKMEGDD EPGFRGGGYSSGGR SFGRGGDRSVGQD
Sbjct: 61  MDDAIREMHGHEFGERIISVNKAEPKMEGDDREPGFRGGGYSSGGRASFGRGGDRSVGQD 120

Query: 121 ECFKCGRPGHWARDCPSVGGGRGRGRGSFSSRSRFDSDSRGDRFGGDRDRYVDDRY---- 180
           ECFKCGRPGHWARDCPS GGGRGRGRGSFSSRSRFD DSRGDRFGGDRDRYVDDRY    
Sbjct: 121 ECFKCGRPGHWARDCPSAGGGRGRGRGSFSSRSRFDGDSRGDRFGGDRDRYVDDRYDGGR 180

Query: 181 DGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSGGDRFAGGDRYDVSDRYPQNGYVKDRGGY 240
           DGGRYGDRDRFDRRDDKYGSRDRYFDDRYPS GDRF GGDRYDVSDRYPQNGYVKDRGGY
Sbjct: 181 DGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFTGGDRYDVSDRYPQNGYVKDRGGY 240

Query: 241 DRDIGPRSGSDRYGS-GGPGRYEGRSYRDRAGPYDRPSRGGRPSSYERY 285
           DRDIGPRSGSDRYG+ GGPGRYEGRSYRDR GPYDRPSRGGRPSSYERY
Sbjct: 241 DRDIGPRSGSDRYGTGGGPGRYEGRSYRDRPGPYDRPSRGGRPSSYERY 289

[Close]

BLAST of MS025890 vs. ExPASy TrEMBL
Match: A0A0A0LQB5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G324460 PE=4 SV=1)

HSP 1 Score: 520.0 bits (1338), Expect = 6.2e-144
Identity = 261/284 (91.90%), Postives = 268/284 (94.37%), Query Frame = 0


Query: 1   MAGKDEYRIFVGGLSWNISERQLENAFSRYGKILETQIMLERDTGRPRGFGFITFADRRG 60
           MA KDEYRIFVGGLSWNISERQLENAF R+GK+LETQIMLERDTGRPRGFGFITFADRRG
Sbjct: 1   MASKDEYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRRG 60

Query: 61  MDDAIREMHGRELGERTISVNKAEPKMEGDDGEPGFRGGGYSSGGRPSFGRGGDRSVGQD 120
           MDDAIREMHG+ELGER ISVNKAEPKMEGDD E GFRGGGYSSGGR SFGRG DRSVGQD
Sbjct: 61  MDDAIREMHGQELGERIISVNKAEPKMEGDDTEQGFRGGGYSSGGRASFGRGKDRSVGQD 120

Query: 121 ECFKCGRPGHWARDCPSVGGGRGRGRGSFSSRSRFDSDSRGDRFGGDRDRYVDDRYDGGR 180
           ECFKCGRPGHWARDCPSVGGGRG GRGSFSSRSRFDSD RGDRFGGDRDRYVD+RY+GGR
Sbjct: 121 ECFKCGRPGHWARDCPSVGGGRGGGRGSFSSRSRFDSDGRGDRFGGDRDRYVDERYNGGR 180

Query: 181 YGDRDRFDRRDDKYGSRDRYFDDRYPSGGDRFAGGDRYDVSDRYPQNGYVKDRGGYDRDI 240
           YGDRDRFDRRDDKYGSRDRYFDDRYPS GDRF G DRYDVSDRYPQNGYVKDR  YDRDI
Sbjct: 181 YGDRDRFDRRDDKYGSRDRYFDDRYPSAGDRFTGSDRYDVSDRYPQNGYVKDR-VYDRDI 240

Query: 241 GPRSGSDRYGSGGPGRYEGRSYRDRAGPYDRPSRGGRPSSYERY 285
           GPRSGSDRYGSGGPGR+EGRSYRDR GPYDRPSR GRPSSY+RY
Sbjct: 241 GPRSGSDRYGSGGPGRHEGRSYRDRTGPYDRPSRVGRPSSYDRY 283

[Close]

BLAST of MS025890 vs. ExPASy TrEMBL
Match: A0A6J1BW59 (glycine-rich RNA-binding protein RZ1C-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111006270 PE=4 SV=1)

HSP 1 Score: 494.2 bits (1271), Expect = 3.6e-136
Identity = 244/246 (99.19%), Postives = 245/246 (99.59%), Query Frame = 0


Query: 39  MLERDTGRPRGFGFITFADRRGMDDAIREMHGRELGERTISVNKAEPKMEGDDGEPGFRG 98
           MLERDTGRPRGFGFITFADRRGMDDAIREMHGRELGERTISVNKAEPKMEGDDGEPGFRG
Sbjct: 1   MLERDTGRPRGFGFITFADRRGMDDAIREMHGRELGERTISVNKAEPKMEGDDGEPGFRG 60

Query: 99  GGYSSGGRPSFGRGGDRSVGQDECFKCGRPGHWARDCPSVGGGRGRGRGSFSSRSRFDSD 158
           GGYSSGGRPSFGRGGDRSVGQDECFKCGRPGHWARDCPSVGGGRGRGRGSFSSRSRFDSD
Sbjct: 61  GGYSSGGRPSFGRGGDRSVGQDECFKCGRPGHWARDCPSVGGGRGRGRGSFSSRSRFDSD 120

Query: 159 SRGDRFGGDRDRYVDDRYDGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSGGDRFAGGDRY 218
           SRGDRFGGDRDRYVDDRYDGGRYGDRD FDRRDDKYGSRDRYFDDRYPSGGDRFAGGDRY
Sbjct: 121 SRGDRFGGDRDRYVDDRYDGGRYGDRDHFDRRDDKYGSRDRYFDDRYPSGGDRFAGGDRY 180

Query: 219 DVSDRYPQNGYVKDRGGYDRDIGPRSGSDRYGSGGPGRYEGRSYRDRAGPYDRPSRGGRP 278
           DVSDRYPQNGYVKDRGGY+RDIGPRSGSDRYGSGGPGRYEGRSYRDRAGPYDRPSRGGRP
Sbjct: 181 DVSDRYPQNGYVKDRGGYNRDIGPRSGSDRYGSGGPGRYEGRSYRDRAGPYDRPSRGGRP 240

Query: 279 SSYERY 285
           SSYERY
Sbjct: 241 SSYERY 246

[Close]

BLAST of MS025890 vs. TAIR 10
Match: AT5G04280.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 300.4 bits (768), Expect = 1.5e-81
Identity = 186/303 (61.39%), Postives = 213/303 (70.30%), Query Frame = 0


Query: 1   MAGKDEYRIFVGGLSWNISERQLENAFSRYGKILETQIMLERDTGRPRGFGFITFADRRG 60
           MA K+  RIFVGGLS  +++R LE AFSR+G IL+ QIMLERDTGR RGFGFITFADRR 
Sbjct: 1   MAAKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRA 60

Query: 61  MDDAIREMHGRELGERTISVNKAEPKMEGDDGEP-GFRGG---GYSSGGRPSFGRGGDRS 120
           MD++IREMHGR+ G+R ISVN+AEPK+  DDGE  G RGG   GYS  G+ SFG GG   
Sbjct: 61  MDESIREMHGRDFGDRVISVNRAEPKLGRDDGESHGSRGGRDSGYSIAGKGSFGGGGGGG 120

Query: 121 --VGQDECFKCGRPGHWARDCPSVGGGRGRGRGSFSSRSRF--DSDSRGDRFGG-----D 180
             VG+DECFKCGR GHWARDCPS GGGRG   G FSSR+     SD R DR+       D
Sbjct: 121 GRVGEDECFKCGRVGHWARDCPSAGGGRGGPVGGFSSRASAYGGSDGRVDRYADRDRYVD 180

Query: 181 RDRYVDDRYDG-GRYGDRDRFDRRDDKYGSRDRYFDDRYPSGGDRFAGGDRYD-VSDRYP 240
           R+RY+DDRYDG  RYG RDRFD R + Y  RDRY  DRY +  DRFAGGDRY   SDRYP
Sbjct: 181 RERYIDDRYDGAARYGARDRFDSR-EAYIPRDRYASDRYAAPADRFAGGDRYSRGSDRYP 240

Query: 241 QNGYVKDRGGYDRDIGPRSGSDRYG---SGGP---GRYEGRSYRDRAG-PYDRPSRGGRP 282
              Y K R  ++RDI P +GSDRYG   +GGP   G  EGR +R RAG PY+RPSR G  
Sbjct: 241 PGSYDKAR-SFERDIAPSAGSDRYGGGRAGGPIRGGGEEGRGFRSRAGAPYERPSRSGGG 300

[Close]

BLAST of MS025890 vs. TAIR 10
Match: AT1G60650.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 276.6 bits (706), Expect = 2.3e-74
Identity = 170/297 (57.24%), Postives = 194/297 (65.32%), Query Frame = 0


Query: 3   GKDEYRIFVGGLSWNISERQLENAFSRYGKILETQIMLERDTGRPRGFGFITFADRRGMD 62
           G  E RIFVGGLSW+++ERQLE+ F RYGKI E QIM+ RDTGRPRGFGFITF DRRG D
Sbjct: 8   GNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGAD 67

Query: 63  DAIREMHGRELGERTISVNKAEPKMEGDDGEPGFRGGGYSSGGRPSFGRGGDRSVGQDEC 122
           DAI+ MHGRELG + ISVNKAEPK+ G+D +   +GGGYSS G+ +          +DEC
Sbjct: 68  DAIKHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGT----------EDEC 127

Query: 123 FKCGRPGHWARDCPSVGGGRGRGRGSFSSRSRF-DSDSRGDRFGG-----------DRDR 182
           FKC RPGHWARDCPS G  R R R   + RSR  D D   DR+G            + DR
Sbjct: 128 FKCRRPGHWARDCPSTGDDRERFRVPLAMRSRIGDIDGHRDRYGDRDLEREREREREFDR 187

Query: 183 YVDDR--YDGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSGGDRFAGGDRYDVSDRYPQNG 242
           Y+D R   DGGRY  RDRFD   DKY  RD Y  +RY   GDRF   DRY + + + +N 
Sbjct: 188 YMDGRRDRDGGRYSYRDRFD-SGDKYEPRDHYPFERYAPPGDRFV-SDRYGMPEHHLENE 247

Query: 243 YVKDRGGYDRDIGPRSGSDRYGSGGPGRYEGRSYRDRAGPYDRPSR-GGRPSSYERY 285
           Y      YDRD   R  SDRYG  GP R EGR YR R GPYDRPSR GGRPSSYER+
Sbjct: 248 YRGRERSYDRDRYARDTSDRYGDMGPIRDEGRPYRSRPGPYDRPSRPGGRPSSYERW 292

[Close]

BLAST of MS025890 vs. TAIR 10
Match: AT1G60650.2 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 276.6 bits (706), Expect = 2.3e-74
Identity = 170/297 (57.24%), Postives = 194/297 (65.32%), Query Frame = 0


Query: 3   GKDEYRIFVGGLSWNISERQLENAFSRYGKILETQIMLERDTGRPRGFGFITFADRRGMD 62
           G  E RIFVGGLSW+++ERQLE+ F RYGKI E QIM+ RDTGRPRGFGFITF DRRG D
Sbjct: 8   GNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGAD 67

Query: 63  DAIREMHGRELGERTISVNKAEPKMEGDDGEPGFRGGGYSSGGRPSFGRGGDRSVGQDEC 122
           DAI+ MHGRELG + ISVNKAEPK+ G+D +   +GGGYSS G+ +          +DEC
Sbjct: 68  DAIKHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGT----------EDEC 127

Query: 123 FKCGRPGHWARDCPSVGGGRGRGRGSFSSRSRF-DSDSRGDRFGG-----------DRDR 182
           FKC RPGHWARDCPS G  R R R   + RSR  D D   DR+G            + DR
Sbjct: 128 FKCRRPGHWARDCPSTGDDRERFRVPLAMRSRIGDIDGHRDRYGDRDLEREREREREFDR 187

Query: 183 YVDDR--YDGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSGGDRFAGGDRYDVSDRYPQNG 242
           Y+D R   DGGRY  RDRFD   DKY  RD Y  +RY   GDRF   DRY + + + +N 
Sbjct: 188 YMDGRRDRDGGRYSYRDRFD-SGDKYEPRDHYPFERYAPPGDRFV-SDRYGMPEHHLENE 247

Query: 243 YVKDRGGYDRDIGPRSGSDRYGSGGPGRYEGRSYRDRAGPYDRPSR-GGRPSSYERY 285
           Y      YDRD   R  SDRYG  GP R EGR YR R GPYDRPSR GGRPSSYER+
Sbjct: 248 YRGRERSYDRDRYARDTSDRYGDMGPIRDEGRPYRSRPGPYDRPSRPGGRPSSYERW 292

[Close]

BLAST of MS025890 vs. TAIR 10
Match: AT3G26420.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 158.3 bits (399), Expect = 9.1e-39
Identity = 115/282 (40.78%), Postives = 153/282 (54.26%), Query Frame = 0


Query: 1   MAGKDEYRIFVGGLSWNISERQLENAFSRYGKILETQIMLERDTGRPRGFGFITFADRRG 60
           M+   EYR F+GGL+W  S+R L +AF +YG ++E +++L++ +GR RGFGFITF +++ 
Sbjct: 1   MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60

Query: 61  MDDAIREMHGRELGERTISVNKAEPKMEG----DDGEPGFRGGGYSSGGRPSFGRGGDRS 120
           MD+AI  M+G +L  RTI+V+KA+P   G    +DG+ G   G      RPS GRGG   
Sbjct: 61  MDEAIAAMNGMDLDGRTITVDKAQPHQGGAGRDNDGDRGRDRGYDRDRSRPSGGRGG--- 120

Query: 121 VGQDECFKCGRPGHWARDCPSVGGGRGRGRGSFSSRSRFDSDSRGDRFGGDRDRY--VDD 180
               +CFKCG+PGH+AR+CPS     G GR S          S+ DR+    DRY   DD
Sbjct: 121 ---GDCFKCGKPGHFARECPSESSRDGGGRFS----------SKDDRYSSKDDRYGAKDD 180

Query: 181 RYDGGRYGDRDRFDRRDDKYGSRDRYFDDRYPSGGDRFAGGDRYDVSDRYPQNGYVKDRG 240
           RY        DR+  +DD+Y S+    DDRY S  DR+  G R     RY  +   +  G
Sbjct: 181 RYG----AKEDRYGAKDDRYSSK----DDRYSSKDDRY--GSRDGGGSRYGPDRSGERAG 240

Query: 241 GYDRDIGPRSGSDRYGSGGPGRYEGRSYRDRAGPYDRPSRGG 277
           G  RD G R        G PG       R    PYDRP  GG
Sbjct: 241 GRSRDGGSR--------GAPG-----GERHSRAPYDRPRAGG 243

[Close]

BLAST of MS025890 vs. TAIR 10
Match: AT2G21660.2 (cold, circadian rhythm, and rna binding 2 )

HSP 1 Score: 110.5 bits (275), Expect = 2.2e-24
Identity = 64/147 (43.54%), Postives = 89/147 (60.54%), Query Frame = 0


Query: 2   AGKDEYRIFVGGLSWNISERQLENAFSRYGKILETQIMLERDTGRPRGFGFITFADRRGM 61
           +G  EYR FVGGL+W   +R LE AF++YG +++++I+ +R+TGR RGFGF+TF D + M
Sbjct: 3   SGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAM 62

Query: 62  DDAIREMHGRELGERTISVNKAEPKMEGDDGEPGFRGGG-YSSGGRPSFGRGGDRSVGQD 121
            DAI  M+G++L  R+I+VN+A+ +  G  G  G RGGG Y  GG    G GG    G  
Sbjct: 63  KDAIEGMNGQDLDGRSITVNEAQSR--GSGGGGGHRGGGSYGGGGGRREGGGGYSGGGGG 122

Query: 122 ECFKCGRPGHWARDCPSVGGGRGRGRG 148
              + G  G +       GGG G G G
Sbjct: 123 YSSRGGGGGSYGGGRREGGGGYGGGEG 147

The following BLAST results are available for this feature:

BLAST of MS025890 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022133790.1	4.8e-159	99.30	glycine-rich RNA-binding protein RZ1C-like isoform X1 [Momordica charantia]	[more]
KAG6602289.1	1.6e-149	93.43	Glycine-rich RNA-binding protein RZ1C, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_022990423.1	3.5e-149	93.08	glycine-rich RNA-binding protein RZ1C [Cucurbita maxima] >XP_022990424.1 glycine...	[more]
XP_022961758.1	4.5e-149	93.08	glycine-rich RNA-binding protein RZ1C-like [Cucurbita moschata] >XP_022961766.1 ...	[more]
XP_023544240.1	1.3e-148	92.73	glycine-rich RNA-binding protein RZ1C [Cucurbita pepo subsp. pepo] >XP_023544248...	[more]

BLAST of MS025890 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RWN5	2.1e-80	61.39	Glycine-rich RNA-binding protein RZ1C OS=Arabidopsis thaliana OX=3702 GN=RZ1C PE...	[more]
O22703	3.2e-73	57.24	Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana OX=3702 GN=RZ1B PE...	[more]
Q9LIN3	1.3e-37	40.78	Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana OX=3702 GN=RZ1A PE...	[more]
P49310	6.8e-23	42.08	Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1	[more]
Q03250	2.0e-22	40.66	Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana OX=3702 GN=RBG7 PE=1 ...	[more]

BLAST of MS025890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BW89	2.3e-159	99.30	glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Momordica charantia OX=...	[more]
A0A6J1JS04	1.7e-149	93.08	glycine-rich RNA-binding protein RZ1C OS=Cucurbita maxima OX=3661 GN=LOC11148728...	[more]
A0A6J1HB93	2.2e-149	93.08	glycine-rich RNA-binding protein RZ1C-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A0A0LQB5	6.2e-144	91.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G324460 PE=4 SV=1	[more]
A0A6J1BW59	3.6e-136	99.19	glycine-rich RNA-binding protein RZ1C-like isoform X2 OS=Momordica charantia OX=...	[more]

BLAST of MS025890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G04280.1	1.5e-81	61.39	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT1G60650.1	2.3e-74	57.24	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT1G60650.2	2.3e-74	57.24	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT3G26420.1	9.1e-39	40.78	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT2G21660.2	2.2e-24	43.54	cold, circadian rhythm, and rna binding 2	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 8..81 e-value: 5.5E-28 score: 109.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 9..78 e-value: 6.7E-20 score: 70.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 7..85 score: 19.706547
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 121..137 e-value: 2.7E-6 score: 36.9
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 121..137 e-value: 9.9E-9 score: 34.9
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 122..137 score: 11.449344
None	No IPR available	GENE3D	4.10.60.10		coord: 118..162 e-value: 4.7E-9 score: 38.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..218
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 258..284
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 134..284
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..116
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 1..234
None	No IPR available	PANTHER	PTHR15241:SF294	GLYCINE-RICH RNA-BINDING PROTEIN RZ1B-LIKE	coord: 1..234
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..117 e-value: 7.4E-31 score: 109.1
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 4..114
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 103..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS025890.1	MS025890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding