MS025878 (gene) Bitter gourd (TR) v1

Overview
NameMS025878
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionSAC3 family protein A isoform X1
Locationscaffold779: 70204 .. 70786 (-)
RNA-Seq ExpressionMS025878
SyntenyMS025878
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAGTTCGTAGACATGGTTTCCCTTTTTCGCCACTGCCATACAATGATTCGAGGGGTATAAGTTCTGCTCTGGACCAAGACCATATGAGATCATGCATACGAAGTAGGAATCAAACTGGCCGATTTTCCTTTAGAAACAGGAGGTTTGAGGTTATGGATCCTCGAGATAGGATAGAGACAAGTGAATACTTTGATGGGCCTGTACATTCTGGTCAATTGAACGACTTACCTGGGGATGGCAACAATGACAATCAGAGAAGGTTTTTTTGACAGATATGAACATTTTCACTCATCCAGGCCTCAATACAATGATTCTGATGGTGAGAATTATCATAGTAATGCGGAGGATAGCCACAGGCCTTTCAGATTTTGTGCAGAGGATGGACCTCCAGAGTTTGATGAGAGAGGTAAGTTGAGGGAGAGGGAGTGTGATAGATGTGTAAAGAGCCAACCGGGAAATTTAACTAGACCAACCGGGGTCATCATCGAAGAGCATAAAGTAGAAGATTACAGGATGGTCGGCAGATGTGGAATGATCATGGTTTTGAAGATATCTCACAAAAGAAAAGAAAGATTTTGA

mRNA sequence

ATGCCAGTTCGTAGACATGGTTTCCCTTTTTCGCCACTGCCATACAATGATTCGAGGGGTATAAGTTCTGCTCTGGACCAAGACCATATGAGATCATGCATACGAAGTAGGAATCAAACTGGCCGATTTTCCTTTAGAAACAGGAGGTTTGAGGTTATGGATCCTCGAGATAGGATAGAGACAAGTGAATACTTTGATGGGCCTGTACATTCTGGTCAATTGAACGACTTACCTGGGGATGGCAACAATGACAATCAGAGAAGTAATGCGGAGGATAGCCACAGGCCTTTCAGATTTTGTGCAGAGGATGGACCTCCAGAGTTTGATGAGAGAGGTAAGTTGAGGGAGAGGGAGTGTGATAGATGTGTAAAGAGCCAACCGGGAAATTTAACTAGACCAACCGGGGTCATCATCGAAGAGCATAAAGTAGAAGATTACAGGATGGTCGGCAGATGTGGAATGATCATGGTTTTGAAGATATCTCACAAAAGAAAAGAAAGATTTTGA

Coding sequence (CDS)

ATGCCAGTTCGTAGACATGGTTTCCCTTTTTCGCCACTGCCATACAATGATTCGAGGGGTATAAGTTCTGCTCTGGACCAAGACCATATGAGATCATGCATACGAAGTAGGAATCAAACTGGCCGATTTTCCTTTAGAAACAGGAGGTTTGAGGTTATGGATCCTCGAGATAGGATAGAGACAAGTGAATACTTTGATGGGCCTGTACATTCTGGTCAATTGAACGACTTACCTGGGGATGGCAACAATGACAATCAGAGAAGTAATGCGGAGGATAGCCACAGGCCTTTCAGATTTTGTGCAGAGGATGGACCTCCAGAGTTTGATGAGAGAGGTAAGTTGAGGGAGAGGGAGTGTGATAGATGTGTAAAGAGCCAACCGGGAAATTTAACTAGACCAACCGGGGTCATCATCGAAGAGCATAAAGTAGAAGATTACAGGATGGTCGGCAGATGTGGAATGATCATGGTTTTGAAGATATCTCACAAAAGAAAAGAAAGATTTTGA

Protein sequence

MPVRRHGFPFSPLPYNDSRGISSALDQDHMRSCIRSRNQTGRFSFRNRRFEVMDPRDRIETSEYFDGPVHSGQLNDLPGDGNNDNQRSNAEDSHRPFRFCAEDGPPEFDERGKLRERECDRCVKSQPGNLTRPTGVIIEEHKVEDYRMVGRCGMIMVLKISHKRKERF
Homology
BLAST of MS025878 vs. NCBI nr
Match: XP_022133555.1 (uncharacterized protein LOC111006113 isoform X2 [Momordica charantia])

HSP 1 Score: 212.6 bits (540), Expect = 2.6e-51
Identity = 110/172 (63.95%), Postives = 126/172 (73.26%), Query Frame = 0

Query: 1    MPVRRHGFPFSPLPYNDSRGISSALDQDHMRSCIRSRNQTGRFSFRNRRFEVMDPRDRIE 60
            MPVRRHGFPFSPLP +D R + SA DQ HMRS IR RN++ R SFRNRRFE+MDPRDRIE
Sbjct: 1101 MPVRRHGFPFSPLPSSDLRDMRSAPDQGHMRSDIRCRNRSDRLSFRNRRFEIMDPRDRIE 1160

Query: 61   TSEYFDGPVHSGQLNDLPGDGNNDNQR-------------------------SNAEDSHR 120
            +SEYFDGP    QLN+L GDGN+D++R                         +NAEDS R
Sbjct: 1161 SSEYFDGP---SQLNELSGDGNDDDRRRFSDRHEHLHSFRPQYNDSDGENYHNNAEDSRR 1220

Query: 121  PFRFCAEDGPPEFDERGKLRERECDRCVKSQPGNLTRPTGVIIEEHKVEDYR 148
            PFRFCAEDGPPEF ERG +RERE +R VK+QPGNLTR TGV+IEEH+VEDYR
Sbjct: 1221 PFRFCAEDGPPEFHERGNMREREFNRRVKNQPGNLTRRTGVVIEEHEVEDYR 1269

BLAST of MS025878 vs. NCBI nr
Match: XP_022133556.1 (uncharacterized protein LOC111006113 isoform X3 [Momordica charantia])

HSP 1 Score: 212.6 bits (540), Expect = 2.6e-51
Identity = 110/172 (63.95%), Postives = 126/172 (73.26%), Query Frame = 0

Query: 1    MPVRRHGFPFSPLPYNDSRGISSALDQDHMRSCIRSRNQTGRFSFRNRRFEVMDPRDRIE 60
            MPVRRHGFPFSPLP +D R + SA DQ HMRS IR RN++ R SFRNRRFE+MDPRDRIE
Sbjct: 1089 MPVRRHGFPFSPLPSSDLRDMRSAPDQGHMRSDIRCRNRSDRLSFRNRRFEIMDPRDRIE 1148

Query: 61   TSEYFDGPVHSGQLNDLPGDGNNDNQR-------------------------SNAEDSHR 120
            +SEYFDGP    QLN+L GDGN+D++R                         +NAEDS R
Sbjct: 1149 SSEYFDGP---SQLNELSGDGNDDDRRRFSDRHEHLHSFRPQYNDSDGENYHNNAEDSRR 1208

Query: 121  PFRFCAEDGPPEFDERGKLRERECDRCVKSQPGNLTRPTGVIIEEHKVEDYR 148
            PFRFCAEDGPPEF ERG +RERE +R VK+QPGNLTR TGV+IEEH+VEDYR
Sbjct: 1209 PFRFCAEDGPPEFHERGNMREREFNRRVKNQPGNLTRRTGVVIEEHEVEDYR 1257

BLAST of MS025878 vs. NCBI nr
Match: XP_022133554.1 (uncharacterized protein LOC111006113 isoform X1 [Momordica charantia])

HSP 1 Score: 212.6 bits (540), Expect = 2.6e-51
Identity = 110/172 (63.95%), Postives = 126/172 (73.26%), Query Frame = 0

Query: 1    MPVRRHGFPFSPLPYNDSRGISSALDQDHMRSCIRSRNQTGRFSFRNRRFEVMDPRDRIE 60
            MPVRRHGFPFSPLP +D R + SA DQ HMRS IR RN++ R SFRNRRFE+MDPRDRIE
Sbjct: 1104 MPVRRHGFPFSPLPSSDLRDMRSAPDQGHMRSDIRCRNRSDRLSFRNRRFEIMDPRDRIE 1163

Query: 61   TSEYFDGPVHSGQLNDLPGDGNNDNQR-------------------------SNAEDSHR 120
            +SEYFDGP    QLN+L GDGN+D++R                         +NAEDS R
Sbjct: 1164 SSEYFDGP---SQLNELSGDGNDDDRRRFSDRHEHLHSFRPQYNDSDGENYHNNAEDSRR 1223

Query: 121  PFRFCAEDGPPEFDERGKLRERECDRCVKSQPGNLTRPTGVIIEEHKVEDYR 148
            PFRFCAEDGPPEF ERG +RERE +R VK+QPGNLTR TGV+IEEH+VEDYR
Sbjct: 1224 PFRFCAEDGPPEFHERGNMREREFNRRVKNQPGNLTRRTGVVIEEHEVEDYR 1272

BLAST of MS025878 vs. NCBI nr
Match: XP_022938519.1 (uncharacterized protein LOC111444729 isoform X1 [Cucurbita moschata] >XP_022938520.1 uncharacterized protein LOC111444729 isoform X1 [Cucurbita moschata])

HSP 1 Score: 174.1 bits (440), Expect = 1.0e-39
Identity = 98/173 (56.65%), Postives = 115/173 (66.47%), Query Frame = 0

Query: 1    MPVRRHGFPFSPLPYNDSRGISSALDQDHMRSCIRSRNQTGRFSFRNRRFEVMDPRD-RI 60
            MPVRRHGFPF  LP ND R + SA D  HMR  IRSRN+T R SFRNRRFE MDPRD RI
Sbjct: 1152 MPVRRHGFPFPSLPPNDLRDMGSARDHGHMRPGIRSRNRTERMSFRNRRFEDMDPRDNRI 1211

Query: 61   ETSEYFDGPVHSGQLNDLPGDGNND-------------------------NQRSNAEDSH 120
            E++EYFDGPVH GQLN+L  DGN+D                         N R++A++  
Sbjct: 1212 ESNEYFDGPVHPGQLNELIDDGNDDDRRRFSDRHEHLHQFRPQCNDSDGENYRNDADERA 1271

Query: 121  RPFRFCAEDGPPEFDERGKLRERECDRCVKSQPGNLTRPTGVIIEEHKVEDYR 148
            RP+R+C ED   EF ERGK+RERE DR VK+QP NL R T  +IEEH+VE+YR
Sbjct: 1272 RPYRYCTED-EEEFHERGKMREREFDRRVKNQPENLGRRT--VIEEHEVEEYR 1321

BLAST of MS025878 vs. NCBI nr
Match: KAG6578731.1 (hypothetical protein SDJN03_23179, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 174.1 bits (440), Expect = 1.0e-39
Identity = 98/173 (56.65%), Postives = 115/173 (66.47%), Query Frame = 0

Query: 1    MPVRRHGFPFSPLPYNDSRGISSALDQDHMRSCIRSRNQTGRFSFRNRRFEVMDPRD-RI 60
            MPVRRHGFPF  LP ND R + SA D  HMR  IRSRN+T R SFRNRRFE MDPRD RI
Sbjct: 1087 MPVRRHGFPFPSLPPNDLRDMGSARDHGHMRPGIRSRNRTERMSFRNRRFEDMDPRDNRI 1146

Query: 61   ETSEYFDGPVHSGQLNDLPGDGNND-------------------------NQRSNAEDSH 120
            E++EYFDGPVH GQLN+L  DGN+D                         N R++A++  
Sbjct: 1147 ESNEYFDGPVHPGQLNELIDDGNDDDRRRFSDRHEHLHQFRPQCNDSDGENYRNDADERA 1206

Query: 121  RPFRFCAEDGPPEFDERGKLRERECDRCVKSQPGNLTRPTGVIIEEHKVEDYR 148
            RP+R+C ED   EF ERGK+RERE DR VK+QP NL R T  +IEEH+VE+YR
Sbjct: 1207 RPYRYCTED-EEEFHERGKMREREFDRRVKNQPENLGRRT--VIEEHEVEEYR 1256

BLAST of MS025878 vs. ExPASy TrEMBL
Match: A0A6J1BWB0 (uncharacterized protein LOC111006113 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111006113 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 1.3e-51
Identity = 110/172 (63.95%), Postives = 126/172 (73.26%), Query Frame = 0

Query: 1    MPVRRHGFPFSPLPYNDSRGISSALDQDHMRSCIRSRNQTGRFSFRNRRFEVMDPRDRIE 60
            MPVRRHGFPFSPLP +D R + SA DQ HMRS IR RN++ R SFRNRRFE+MDPRDRIE
Sbjct: 1104 MPVRRHGFPFSPLPSSDLRDMRSAPDQGHMRSDIRCRNRSDRLSFRNRRFEIMDPRDRIE 1163

Query: 61   TSEYFDGPVHSGQLNDLPGDGNNDNQR-------------------------SNAEDSHR 120
            +SEYFDGP    QLN+L GDGN+D++R                         +NAEDS R
Sbjct: 1164 SSEYFDGP---SQLNELSGDGNDDDRRRFSDRHEHLHSFRPQYNDSDGENYHNNAEDSRR 1223

Query: 121  PFRFCAEDGPPEFDERGKLRERECDRCVKSQPGNLTRPTGVIIEEHKVEDYR 148
            PFRFCAEDGPPEF ERG +RERE +R VK+QPGNLTR TGV+IEEH+VEDYR
Sbjct: 1224 PFRFCAEDGPPEFHERGNMREREFNRRVKNQPGNLTRRTGVVIEEHEVEDYR 1272

BLAST of MS025878 vs. ExPASy TrEMBL
Match: A0A6J1BVF8 (uncharacterized protein LOC111006113 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111006113 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 1.3e-51
Identity = 110/172 (63.95%), Postives = 126/172 (73.26%), Query Frame = 0

Query: 1    MPVRRHGFPFSPLPYNDSRGISSALDQDHMRSCIRSRNQTGRFSFRNRRFEVMDPRDRIE 60
            MPVRRHGFPFSPLP +D R + SA DQ HMRS IR RN++ R SFRNRRFE+MDPRDRIE
Sbjct: 1089 MPVRRHGFPFSPLPSSDLRDMRSAPDQGHMRSDIRCRNRSDRLSFRNRRFEIMDPRDRIE 1148

Query: 61   TSEYFDGPVHSGQLNDLPGDGNNDNQR-------------------------SNAEDSHR 120
            +SEYFDGP    QLN+L GDGN+D++R                         +NAEDS R
Sbjct: 1149 SSEYFDGP---SQLNELSGDGNDDDRRRFSDRHEHLHSFRPQYNDSDGENYHNNAEDSRR 1208

Query: 121  PFRFCAEDGPPEFDERGKLRERECDRCVKSQPGNLTRPTGVIIEEHKVEDYR 148
            PFRFCAEDGPPEF ERG +RERE +R VK+QPGNLTR TGV+IEEH+VEDYR
Sbjct: 1209 PFRFCAEDGPPEFHERGNMREREFNRRVKNQPGNLTRRTGVVIEEHEVEDYR 1257

BLAST of MS025878 vs. ExPASy TrEMBL
Match: A0A6J1BVK8 (uncharacterized protein LOC111006113 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111006113 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 1.3e-51
Identity = 110/172 (63.95%), Postives = 126/172 (73.26%), Query Frame = 0

Query: 1    MPVRRHGFPFSPLPYNDSRGISSALDQDHMRSCIRSRNQTGRFSFRNRRFEVMDPRDRIE 60
            MPVRRHGFPFSPLP +D R + SA DQ HMRS IR RN++ R SFRNRRFE+MDPRDRIE
Sbjct: 1101 MPVRRHGFPFSPLPSSDLRDMRSAPDQGHMRSDIRCRNRSDRLSFRNRRFEIMDPRDRIE 1160

Query: 61   TSEYFDGPVHSGQLNDLPGDGNNDNQR-------------------------SNAEDSHR 120
            +SEYFDGP    QLN+L GDGN+D++R                         +NAEDS R
Sbjct: 1161 SSEYFDGP---SQLNELSGDGNDDDRRRFSDRHEHLHSFRPQYNDSDGENYHNNAEDSRR 1220

Query: 121  PFRFCAEDGPPEFDERGKLRERECDRCVKSQPGNLTRPTGVIIEEHKVEDYR 148
            PFRFCAEDGPPEF ERG +RERE +R VK+QPGNLTR TGV+IEEH+VEDYR
Sbjct: 1221 PFRFCAEDGPPEFHERGNMREREFNRRVKNQPGNLTRRTGVVIEEHEVEDYR 1269

BLAST of MS025878 vs. ExPASy TrEMBL
Match: A0A6J1FEB1 (uncharacterized protein LOC111444729 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111444729 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 4.9e-40
Identity = 98/173 (56.65%), Postives = 115/173 (66.47%), Query Frame = 0

Query: 1    MPVRRHGFPFSPLPYNDSRGISSALDQDHMRSCIRSRNQTGRFSFRNRRFEVMDPRD-RI 60
            MPVRRHGFPF  LP ND R + SA D  HMR  IRSRN+T R SFRNRRFE MDPRD RI
Sbjct: 1152 MPVRRHGFPFPSLPPNDLRDMGSARDHGHMRPGIRSRNRTERMSFRNRRFEDMDPRDNRI 1211

Query: 61   ETSEYFDGPVHSGQLNDLPGDGNND-------------------------NQRSNAEDSH 120
            E++EYFDGPVH GQLN+L  DGN+D                         N R++A++  
Sbjct: 1212 ESNEYFDGPVHPGQLNELIDDGNDDDRRRFSDRHEHLHQFRPQCNDSDGENYRNDADERA 1271

Query: 121  RPFRFCAEDGPPEFDERGKLRERECDRCVKSQPGNLTRPTGVIIEEHKVEDYR 148
            RP+R+C ED   EF ERGK+RERE DR VK+QP NL R T  +IEEH+VE+YR
Sbjct: 1272 RPYRYCTED-EEEFHERGKMREREFDRRVKNQPENLGRRT--VIEEHEVEEYR 1321

BLAST of MS025878 vs. ExPASy TrEMBL
Match: A0A6J1FDD8 (uncharacterized protein LOC111444729 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111444729 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 4.9e-40
Identity = 98/173 (56.65%), Postives = 115/173 (66.47%), Query Frame = 0

Query: 1    MPVRRHGFPFSPLPYNDSRGISSALDQDHMRSCIRSRNQTGRFSFRNRRFEVMDPRD-RI 60
            MPVRRHGFPF  LP ND R + SA D  HMR  IRSRN+T R SFRNRRFE MDPRD RI
Sbjct: 1130 MPVRRHGFPFPSLPPNDLRDMGSARDHGHMRPGIRSRNRTERMSFRNRRFEDMDPRDNRI 1189

Query: 61   ETSEYFDGPVHSGQLNDLPGDGNND-------------------------NQRSNAEDSH 120
            E++EYFDGPVH GQLN+L  DGN+D                         N R++A++  
Sbjct: 1190 ESNEYFDGPVHPGQLNELIDDGNDDDRRRFSDRHEHLHQFRPQCNDSDGENYRNDADERA 1249

Query: 121  RPFRFCAEDGPPEFDERGKLRERECDRCVKSQPGNLTRPTGVIIEEHKVEDYR 148
            RP+R+C ED   EF ERGK+RERE DR VK+QP NL R T  +IEEH+VE+YR
Sbjct: 1250 RPYRYCTED-EEEFHERGKMREREFDRRVKNQPENLGRRT--VIEEHEVEEYR 1299

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022133555.12.6e-5163.95uncharacterized protein LOC111006113 isoform X2 [Momordica charantia][more]
XP_022133556.12.6e-5163.95uncharacterized protein LOC111006113 isoform X3 [Momordica charantia][more]
XP_022133554.12.6e-5163.95uncharacterized protein LOC111006113 isoform X1 [Momordica charantia][more]
XP_022938519.11.0e-3956.65uncharacterized protein LOC111444729 isoform X1 [Cucurbita moschata] >XP_0229385... [more]
KAG6578731.11.0e-3956.65hypothetical protein SDJN03_23179, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1BWB01.3e-5163.95uncharacterized protein LOC111006113 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A6J1BVF81.3e-5163.95uncharacterized protein LOC111006113 isoform X3 OS=Momordica charantia OX=3673 G... [more]
A0A6J1BVK81.3e-5163.95uncharacterized protein LOC111006113 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A6J1FEB14.9e-4056.65uncharacterized protein LOC111444729 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1FDD84.9e-4056.65uncharacterized protein LOC111444729 isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..102
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 87..102
NoneNo IPR availablePANTHERPTHR34536:SF4BNAC09G43500D PROTEINcoord: 3..165
NoneNo IPR availablePANTHERPTHR34536DENTIN SIALOPHOSPHOPROTEIN-LIKE PROTEINcoord: 3..165

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS025878.1MS025878.1mRNA