MS025845 (gene) Bitter gourd (TR) v1

Overview


Name	MS025845
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	cysteine-rich and transmembrane domain-containing protein WIH2
Location	scaffold173: 841250 .. 841724 (+)
RNA-Seq Expression	MS025845
Synteny	MS025845

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTACTCTTACGCCTACCACCACCACCACCAGCCGGAATCCTATCCTCCGCCTCCTCCCGGTGAGATTTCTCCTCCTCCTTTTTCTTTCCTCTTTCAATTTCCCTTTTCTTTTCTCTCATTTTTGTTCTTCTCTCTTCACAGGCTCTGCTCCGCCGTATCCTCCGTCGCCGCCGCAGCCGCAGTCTGGGTACCCAGGCCCTCCGCCTGGGTATCCCGGCCCCCCACCGCACCAAGGCTACCAAGGCTATTTCTACGATGGATATCCGGCCCCGCCGGGCCCTCATCCTCCTCCTCCGCCGGGCCCTCCTCCTCCGCCTTATTATGATCACTATCACTACAATGATCGAGATGAATGCTCCTCCTTCCTTCATGGATGGTACGTTTTTCCATTTCTTCAATTCGATTCAATTCCTATTGTGATTGATGATCATTTGTTCCGACGCCTTCGATTTCTATGCTTGTCCGTGTGA

mRNA sequence

ATGAGTTACTCTTACGCCTACCACCACCACCACCAGCCGGAATCCTATCCTCCGCCTCCTCCCGGCTCTGCTCCGCCGTATCCTCCGTCGCCGCCGCAGCCGCAGTCTGGGTACCCAGGCCCTCCGCCTGGGTATCCCGGCCCCCCACCGCACCAAGGCTACCAAGGCTATTTCTACGATGGATATCCGGCCCCGCCGGGCCCTCATCCTCCTCCTCCGCCGGGCCCTCCTCCTCCGCCTTATTATGATCACTATCACTACAATGATCGAGATGAATGCTCCTCCTTCCTTCATGGATGGTACGTTTTTCCATTTCTTCAATTCGATTCAATTCCTATTGTGATTGATGATCATTTGTTCCGACGCCTTCGATTTCTATGCTTGTCCGTGTGA

Coding sequence (CDS)

ATGAGTTACTCTTACGCCTACCACCACCACCACCAGCCGGAATCCTATCCTCCGCCTCCTCCCGGCTCTGCTCCGCCGTATCCTCCGTCGCCGCCGCAGCCGCAGTCTGGGTACCCAGGCCCTCCGCCTGGGTATCCCGGCCCCCCACCGCACCAAGGCTACCAAGGCTATTTCTACGATGGATATCCGGCCCCGCCGGGCCCTCATCCTCCTCCTCCGCCGGGCCCTCCTCCTCCGCCTTATTATGATCACTATCACTACAATGATCGAGATGAATGCTCCTCCTTCCTTCATGGATGGTACGTTTTTCCATTTCTTCAATTCGATTCAATTCCTATTGTGATTGATGATCATTTGTTCCGACGCCTTCGATTTCTATGCTTGTCCGTGTGA

Protein sequence

MSYSYAYHHHHQPESYPPPPPGSAPPYPPSPPQPQSGYPGPPPGYPGPPPHQGYQGYFYDGYPAPPGPHPPPPPGPPPPPYYDHYHYNDRDECSSFLHGWYVFPFLQFDSIPIVIDDHLFRRLRFLCLSV

Homology

[Close]

BLAST of MS025845 vs. NCBI nr
Match: XP_022156524.1 (cysteine-rich and transmembrane domain-containing protein WIH2 [Momordica charantia])

HSP 1 Score: 184.9 bits (468), Expect = 4.5e-43
Identity = 92/99 (92.93%), Postives = 92/99 (92.93%), Query Frame = 0


Query: 1   MSYSYAYHHHHQPESYPPPPPGSAPPYPPSPPQPQSGYPGPPPGYPGPPPHQGYQGYFYD 60
           MSYSYAYHHHHQPESYPPPPPGSAPPYPPSPPQPQS       GYPGPPPHQGYQGYFYD
Sbjct: 1   MSYSYAYHHHHQPESYPPPPPGSAPPYPPSPPQPQS-------GYPGPPPHQGYQGYFYD 60

Query: 61  GYPAPPGPHPPPPPGPPPPPYYDHYHYNDRDECSSFLHG 100
           GYPAPPGPHPPPPPGPPPPPYYDHYHYNDRDECSSFLHG
Sbjct: 61  GYPAPPGPHPPPPPGPPPPPYYDHYHYNDRDECSSFLHG 92

[Close]

BLAST of MS025845 vs. NCBI nr
Match: KAG7022631.1 (hypothetical protein SDJN02_16365 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 107.8 bits (268), Expect = 7.0e-20
Identity = 65/103 (63.11%), Postives = 69/103 (66.99%), Query Frame = 0


Query: 1   MSYSYAYHHHHQPESYPPPPPGSAPPYPPSPPQPQSGYPGPPPGYPG--PPPHQGYQGYF 60
           MSY Y+ HHH  PE+YPPP                 GYP P PGYPG  PPPHQGYQ YF
Sbjct: 1   MSYPYS-HHHTPPETYPPP-----------------GYPPPQPGYPGNPPPPHQGYQDYF 60

Query: 61  YDGYPAPPGPHPPPPPGPPPPPY-YDHYHYNDRDECSSFLHGW 101
           YDGY  P  P PPPPPGPPPPPY + HYHY+DRDECSSFL GW
Sbjct: 61  YDGY-QPSAPLPPPPPGPPPPPYHHQHYHYDDRDECSSFLRGW 84

[Close]

BLAST of MS025845 vs. NCBI nr
Match: XP_022928579.1 (cysteine-rich and transmembrane domain-containing protein WIH2-like [Cucurbita moschata] >XP_023529271.1 cysteine-rich and transmembrane domain-containing protein WIH2-like [Cucurbita pepo subsp. pepo] >KAG6588871.1 hypothetical protein SDJN03_17436, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 104.0 bits (258), Expect = 1.0e-18
Identity = 64/102 (62.75%), Postives = 68/102 (66.67%), Query Frame = 0


Query: 1   MSYSYAYHHHHQPESYPPPPPGSAPPYPPSPPQPQSGYPGPPPGYPG--PPPHQGYQGYF 60
           MSY Y+ HHH  PE+YPPP                 GYP P PGYPG  PPPHQGYQ YF
Sbjct: 1   MSYPYS-HHHTPPETYPPP-----------------GYPPPQPGYPGNPPPPHQGYQDYF 60

Query: 61  YDGYPAPPGPHPPPPPGPPPPPY-YDHYHYNDRDECSSFLHG 100
           YDGY  P  P PPPPPGPPPPPY + HYHY+DRDECSSFL G
Sbjct: 61  YDGY-QPSAPLPPPPPGPPPPPYHHQHYHYDDRDECSSFLRG 83

[Close]

BLAST of MS025845 vs. NCBI nr
Match: XP_022989747.1 (cysteine-rich and transmembrane domain-containing protein WIH2-like [Cucurbita maxima])

HSP 1 Score: 100.9 bits (250), Expect = 8.5e-18
Identity = 63/102 (61.76%), Postives = 68/102 (66.67%), Query Frame = 0


Query: 1   MSYSYAYHHHHQPESYPPPPPGSAPPYPPSPPQPQSGYPGPPPGYPG--PPPHQGYQGYF 60
           MSY Y+ HHH  PE+YPPP                 GYP P PGYPG  PPPHQGYQ YF
Sbjct: 1   MSYPYS-HHHTPPETYPPP-----------------GYPPPQPGYPGNPPPPHQGYQEYF 60

Query: 61  YDGYPAPPGPHPPPPPGPPPPPY-YDHYHYNDRDECSSFLHG 100
           YDGY  P  P PPPPPGPPPPPY + HY+Y+DRDECSSFL G
Sbjct: 61  YDGY-QPSAPLPPPPPGPPPPPYHHQHYNYDDRDECSSFLRG 83

[Close]

BLAST of MS025845 vs. NCBI nr
Match: XP_022934109.1 (cysteine-rich and transmembrane domain-containing protein WIH2-like [Cucurbita moschata] >XP_022983676.1 cysteine-rich and transmembrane domain-containing protein WIH2-like [Cucurbita maxima] >XP_023527083.1 cysteine-rich and transmembrane domain-containing protein WIH2-like [Cucurbita pepo subsp. pepo] >KAG7017860.1 hypothetical protein SDJN02_19726 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 98.2 bits (243), Expect = 5.5e-17
Identity = 61/105 (58.10%), Postives = 68/105 (64.76%), Query Frame = 0


Query: 1   MSYSYAYHHHHQPESYPPPPPGSAPPYPPSPPQPQSGYPGPPPGYPG-----PPPHQGYQ 60
           M+Y Y Y  H  PE+YPPP                 GY  P PGYPG     PPPHQGYQ
Sbjct: 1   MNYPYGY-QHPPPETYPPP-----------------GYRPPQPGYPGHQPLPPPPHQGYQ 60

Query: 61  GYFYDGYPAPPGPHPPPPPGPPPPPY-YDHYHYNDRDECSSFLHG 100
           GYFYDGY +P  P PPPPPGPPPPPY + HYHY+DR++CSSFLHG
Sbjct: 61  GYFYDGY-SPSAPPPPPPPGPPPPPYCHQHYHYDDRNDCSSFLHG 86

[Close]

BLAST of MS025845 vs. ExPASy TrEMBL
Match: A0A6J1DTR1 (cysteine-rich and transmembrane domain-containing protein WIH2 OS=Momordica charantia OX=3673 GN=LOC111023405 PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 2.2e-43
Identity = 92/99 (92.93%), Postives = 92/99 (92.93%), Query Frame = 0


Query: 1   MSYSYAYHHHHQPESYPPPPPGSAPPYPPSPPQPQSGYPGPPPGYPGPPPHQGYQGYFYD 60
           MSYSYAYHHHHQPESYPPPPPGSAPPYPPSPPQPQS       GYPGPPPHQGYQGYFYD
Sbjct: 1   MSYSYAYHHHHQPESYPPPPPGSAPPYPPSPPQPQS-------GYPGPPPHQGYQGYFYD 60

Query: 61  GYPAPPGPHPPPPPGPPPPPYYDHYHYNDRDECSSFLHG 100
           GYPAPPGPHPPPPPGPPPPPYYDHYHYNDRDECSSFLHG
Sbjct: 61  GYPAPPGPHPPPPPGPPPPPYYDHYHYNDRDECSSFLHG 92

[Close]

BLAST of MS025845 vs. ExPASy TrEMBL
Match: A0A6J1EL88 (cysteine-rich and transmembrane domain-containing protein WIH2-like OS=Cucurbita moschata OX=3662 GN=LOC111435344 PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 4.9e-19
Identity = 64/102 (62.75%), Postives = 68/102 (66.67%), Query Frame = 0


Query: 1   MSYSYAYHHHHQPESYPPPPPGSAPPYPPSPPQPQSGYPGPPPGYPG--PPPHQGYQGYF 60
           MSY Y+ HHH  PE+YPPP                 GYP P PGYPG  PPPHQGYQ YF
Sbjct: 1   MSYPYS-HHHTPPETYPPP-----------------GYPPPQPGYPGNPPPPHQGYQDYF 60

Query: 61  YDGYPAPPGPHPPPPPGPPPPPY-YDHYHYNDRDECSSFLHG 100
           YDGY  P  P PPPPPGPPPPPY + HYHY+DRDECSSFL G
Sbjct: 61  YDGY-QPSAPLPPPPPGPPPPPYHHQHYHYDDRDECSSFLRG 83

[Close]

BLAST of MS025845 vs. ExPASy TrEMBL
Match: A0A6J1JGP0 (cysteine-rich and transmembrane domain-containing protein WIH2-like OS=Cucurbita maxima OX=3661 GN=LOC111486738 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 4.1e-18
Identity = 63/102 (61.76%), Postives = 68/102 (66.67%), Query Frame = 0


Query: 1   MSYSYAYHHHHQPESYPPPPPGSAPPYPPSPPQPQSGYPGPPPGYPG--PPPHQGYQGYF 60
           MSY Y+ HHH  PE+YPPP                 GYP P PGYPG  PPPHQGYQ YF
Sbjct: 1   MSYPYS-HHHTPPETYPPP-----------------GYPPPQPGYPGNPPPPHQGYQEYF 60

Query: 61  YDGYPAPPGPHPPPPPGPPPPPY-YDHYHYNDRDECSSFLHG 100
           YDGY  P  P PPPPPGPPPPPY + HY+Y+DRDECSSFL G
Sbjct: 61  YDGY-QPSAPLPPPPPGPPPPPYHHQHYNYDDRDECSSFLRG 83

[Close]

BLAST of MS025845 vs. ExPASy TrEMBL
Match: A0A6J1J313 (cysteine-rich and transmembrane domain-containing protein WIH2-like OS=Cucurbita maxima OX=3661 GN=LOC111482221 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.7e-17
Identity = 61/105 (58.10%), Postives = 68/105 (64.76%), Query Frame = 0


Query: 1   MSYSYAYHHHHQPESYPPPPPGSAPPYPPSPPQPQSGYPGPPPGYPG-----PPPHQGYQ 60
           M+Y Y Y  H  PE+YPPP                 GY  P PGYPG     PPPHQGYQ
Sbjct: 1   MNYPYGY-QHPPPETYPPP-----------------GYRPPQPGYPGHQPLPPPPHQGYQ 60

Query: 61  GYFYDGYPAPPGPHPPPPPGPPPPPY-YDHYHYNDRDECSSFLHG 100
           GYFYDGY +P  P PPPPPGPPPPPY + HYHY+DR++CSSFLHG
Sbjct: 61  GYFYDGY-SPSAPPPPPPPGPPPPPYCHQHYHYDDRNDCSSFLHG 86

[Close]

BLAST of MS025845 vs. ExPASy TrEMBL
Match: A0A6J1F1N0 (cysteine-rich and transmembrane domain-containing protein WIH2-like OS=Cucurbita moschata OX=3662 GN=LOC111441381 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.7e-17
Identity = 61/105 (58.10%), Postives = 68/105 (64.76%), Query Frame = 0


Query: 1   MSYSYAYHHHHQPESYPPPPPGSAPPYPPSPPQPQSGYPGPPPGYPG-----PPPHQGYQ 60
           M+Y Y Y  H  PE+YPPP                 GY  P PGYPG     PPPHQGYQ
Sbjct: 1   MNYPYGY-QHPPPETYPPP-----------------GYRPPQPGYPGHQPLPPPPHQGYQ 60

Query: 61  GYFYDGYPAPPGPHPPPPPGPPPPPY-YDHYHYNDRDECSSFLHG 100
           GYFYDGY +P  P PPPPPGPPPPPY + HYHY+DR++CSSFLHG
Sbjct: 61  GYFYDGY-SPSAPPPPPPPGPPPPPYCHQHYHYDDRNDCSSFLHG 86

The following BLAST results are available for this feature:

BLAST of MS025845 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156524.1	4.5e-43	92.93	cysteine-rich and transmembrane domain-containing protein WIH2 [Momordica charan...	[more]
KAG7022631.1	7.0e-20	63.11	hypothetical protein SDJN02_16365 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022928579.1	1.0e-18	62.75	cysteine-rich and transmembrane domain-containing protein WIH2-like [Cucurbita m...	[more]
XP_022989747.1	8.5e-18	61.76	cysteine-rich and transmembrane domain-containing protein WIH2-like [Cucurbita m...	[more]
XP_022934109.1	5.5e-17	58.10	cysteine-rich and transmembrane domain-containing protein WIH2-like [Cucurbita m...	[more]

BLAST of MS025845 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS025845 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DTR1	2.2e-43	92.93	cysteine-rich and transmembrane domain-containing protein WIH2 OS=Momordica char...	[more]
A0A6J1EL88	4.9e-19	62.75	cysteine-rich and transmembrane domain-containing protein WIH2-like OS=Cucurbita...	[more]
A0A6J1JGP0	4.1e-18	61.76	cysteine-rich and transmembrane domain-containing protein WIH2-like OS=Cucurbita...	[more]
A0A6J1J313	2.7e-17	58.10	cysteine-rich and transmembrane domain-containing protein WIH2-like OS=Cucurbita...	[more]
A0A6J1F1N0	2.7e-17	58.10	cysteine-rich and transmembrane domain-containing protein WIH2-like OS=Cucurbita...	[more]

BLAST of MS025845 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 35..51 score: 35.29 coord: 62..79 score: 41.11 coord: 13..34 score: 44.55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS025845.1	MS025845.1	mRNA