MS025841 (gene) Bitter gourd (TR) v1

Overview


Name	MS025841
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold173: 243233 .. 243571 (-)
RNA-Seq Expression	MS025841
Synteny	MS025841

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCCGTCAATCTGTTTTTGTTCTTGCTCTCATCTTCGCCGCTGTTGTCGGTGCTGTTGCTCAAGCTCCGGCAACCTCCCCCACTGGTTCTCCAACGCTGATCAGCTCGTCGTCTGGTTCCGCCTCATCTTCTCCGACCGCCTCTTCAGAGGCTTCATCGCAGTCGTCTGTATCAGCATCTGATCCGTCGTCGACGGCTCCGATGAGCTCGCTTGGTTCTTACCCTTCCATAGCTTCTTCGCCGACCGGCGAGACTCCGGCCAGTTCTCCTTCTCAGGCTCCGACCGGCTCCCCTTTCGTGGCTCGTAGATTGTTTGGAAATTATTTTCTTGGCTGA

mRNA sequence

ATGGCCCGTCAATCTGTTTTTGTTCTTGCTCTCATCTTCGCCGCTGTTGTCGGTGCTGTTGCTCAAGCTCCGGCAACCTCCCCCACTGGTTCTCCAACGCTGATCAGCTCGTCGTCTGGTTCCGCCTCATCTTCTCCGACCGCCTCTTCAGAGGCTTCATCGCAGTCGTCTGTATCAGCATCTGATCCGTCGTCGACGGCTCCGATGAGCTCGCTTGGTTCTTACCCTTCCATAGCTTCTTCGCCGACCGGCGAGACTCCGGCCAGTTCTCCTTCTCAGGCTCCGACCGGCTCCCCTTTCGTGGCTCGTAGATTGTTTGGAAATTATTTTCTTGGCTGA

Coding sequence (CDS)

ATGGCCCGTCAATCTGTTTTTGTTCTTGCTCTCATCTTCGCCGCTGTTGTCGGTGCTGTTGCTCAAGCTCCGGCAACCTCCCCCACTGGTTCTCCAACGCTGATCAGCTCGTCGTCTGGTTCCGCCTCATCTTCTCCGACCGCCTCTTCAGAGGCTTCATCGCAGTCGTCTGTATCAGCATCTGATCCGTCGTCGACGGCTCCGATGAGCTCGCTTGGTTCTTACCCTTCCATAGCTTCTTCGCCGACCGGCGAGACTCCGGCCAGTTCTCCTTCTCAGGCTCCGACCGGCTCCCCTTTCGTGGCTCGTAGATTGTTTGGAAATTATTTTCTTGGCTGA

Protein sequence

MARQSVFVLALIFAAVVGAVAQAPATSPTGSPTLISSSSGSASSSPTASSEASSQSSVSASDPSSTAPMSSLGSYPSIASSPTGETPASSPSQAPTGSPFVARRLFGNYFLG

Homology

[Close]

BLAST of MS025841 vs. NCBI nr
Match: XP_022154166.1 (putative protein TPRXL [Momordica charantia])

HSP 1 Score: 156.4 bits (394), Expect = 1.5e-34
Identity = 102/116 (87.93%), Postives = 105/116 (90.52%), Query Frame = 0


Query: 1   MARQSVFVLALIFAAVVGAVAQAPATSPTGSPTLISSSSGSASS----SPTASSEASSQS 60
           MARQS+FVL LIF AVVGAVAQAPATSPT SPTLISSSSG ASS    SPTASSEASSQS
Sbjct: 1   MARQSLFVLGLIFTAVVGAVAQAPATSPTDSPTLISSSSGPASSSPSLSPTASSEASSQS 60

Query: 61  SVSASDPSSTAPMSSLGSYPSIASSPTGETPASSPSQAPTGSPFVARRLFGNYFLG 113
           SVSAS PSS A MSSLGSYPSIASSPTGETPASSPS+APTGSPFVAR+LFGNYFLG
Sbjct: 61  SVSASAPSSMATMSSLGSYPSIASSPTGETPASSPSKAPTGSPFVARKLFGNYFLG 116

[Close]

BLAST of MS025841 vs. ExPASy TrEMBL
Match: A0A6J1DMX5 (Uncharacterized protein OS=Momordica charantia OX=3673 GN=LOC111021481 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 7.1e-35
Identity = 102/116 (87.93%), Postives = 105/116 (90.52%), Query Frame = 0


Query: 1   MARQSVFVLALIFAAVVGAVAQAPATSPTGSPTLISSSSGSASS----SPTASSEASSQS 60
           MARQS+FVL LIF AVVGAVAQAPATSPT SPTLISSSSG ASS    SPTASSEASSQS
Sbjct: 1   MARQSLFVLGLIFTAVVGAVAQAPATSPTDSPTLISSSSGPASSSPSLSPTASSEASSQS 60

Query: 61  SVSASDPSSTAPMSSLGSYPSIASSPTGETPASSPSQAPTGSPFVARRLFGNYFLG 113
           SVSAS PSS A MSSLGSYPSIASSPTGETPASSPS+APTGSPFVAR+LFGNYFLG
Sbjct: 61  SVSASAPSSMATMSSLGSYPSIASSPTGETPASSPSKAPTGSPFVARKLFGNYFLG 116

The following BLAST results are available for this feature:

BLAST of MS025841 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154166.1	1.5e-34	87.93	putative protein TPRXL [Momordica charantia]	[more]

BLAST of MS025841 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS025841 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DMX5	7.1e-35	87.93	Uncharacterized protein OS=Momordica charantia OX=3673 GN=LOC111021481 PE=4 SV=1	[more]

BLAST of MS025841 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS025841.1	MS025841.1	mRNA