MS025785 (gene) Bitter gourd (TR) v1

Overview
NameMS025785
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionIntegrase_H2C2 domain-containing protein
Locationscaffold813: 2346449 .. 2346862 (+)
RNA-Seq ExpressionMS025785
SyntenyMS025785
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGAGTGTTGACCTTGCAGATGGCGAGTTGGTGGAGGACGATGTCGAGCTCGGCCTTGCTATACTCGATCTGACGTTGGAGGTCGCGGATGATGCGGTAGCAGCCGCCGACGGGGTCGAGGGAGCGGACGTCGGACTGGAAGATGATGGTACGCATGGCCTCTTCCTTCTCGAAGGGGTCGAGGTTCTTGATGATCTTGGTGATGTTGCTGACGCCGAAGAGCTTGTGGGCGTTCAAGAATTGGCGCTGCCGGTCGTGGGGGAAGTATGGGGCAAGAATGCAGTCCGGGGCGCACTTCCGGCGCTGGTATTTGCAGGCGGCGCAGGCCTGGGTGGTGGCGGAGGACGGCGCGGCGGAGGACGGCGGCGGGTGGGATCTGCTGTGGTGGTGGGTGCTGCTGCTGCTCATTGA

mRNA sequence

ATGTTGAGTGTTGACCTTGCAGATGGCGAGTTGGTGGAGGACGATGTCGAGCTCGGCCTTGCTATACTCGATCTGACGTTGGAGGTCGCGGATGATGCGGTAGCAGCCGCCGACGGGGTCGAGGGAGCGGACGTCGGACTGGAAGATGATGGTACGCATGGCCTCTTCCTTCTCGAAGGGGTCGAGGTTCTTGATGATCTTGGTGATGTTGCTGACGCCGAAGAGCTTGTGGGCGTTCAAGAATTGGCGCTGCCGGTCGTGGGGGAAGTATGGGGCAAGAATGCAGTCCGGGGCGCACTTCCGGCGCTGGTATTTGCAGGCGGCGCAGGCCTGGGTGGTGGCGGAGGACGGCGCGGCGGAGGACGGCGGCGGGTGGGATCTGCTGTGGTGGTGGGTGCTGCTGCTGCTCATTGA

Coding sequence (CDS)

ATGTTGAGTGTTGACCTTGCAGATGGCGAGTTGGTGGAGGACGATGTCGAGCTCGGCCTTGCTATACTCGATCTGACGTTGGAGGTCGCGGATGATGCGGTAGCAGCCGCCGACGGGGTCGAGGGAGCGGACGTCGGACTGGAAGATGATGGTACGCATGGCCTCTTCCTTCTCGAAGGGGTCGAGGTTCTTGATGATCTTGGTGATGTTGCTGACGCCGAAGAGCTTGTGGGCGTTCAAGAATTGGCGCTGCCGGTCGTGGGGGAAGTATGGGGCAAGAATGCAGTCCGGGGCGCACTTCCGGCGCTGGTATTTGCAGGCGGCGCAGGCCTGGGTGGTGGCGGAGGACGGCGCGGCGGAGGACGGCGGCGGGTGGGATCTGCTGTGGTGGTGGGTGCTGCTGCTGCTCATTGA

Protein sequence

MLSVDLADGELVEDDVELGLAILDLTLEVADDAVAAADGVEGADVGLEDDGTHGLFLLEGVEVLDDLGDVADAEELVGVQELALPVVGEVWGKNAVRGALPALVFAGGAGLGGGGGRRGGGRRRVGSAVVVGAAAAH
Homology
BLAST of MS025785 vs. NCBI nr
Match: PON48152.1 (hypothetical protein PanWU01x14_239400 [Parasponia andersonii])

HSP 1 Score: 120.6 bits (301), Expect = 1.1e-23
Identity = 72/103 (69.90%), Postives = 84/103 (81.55%), Query Frame = 0

Query: 10  ELVEDDVELGLAILDLTLEVADDAVAAADGVEGADVGLEDDGTHGLFLLE-GVEVLDDLG 69
           E++E++VELGL  ++L LEV DDAVAAA+GV GA VGLEDDG HG+ L + GVE+ DDLG
Sbjct: 43  EMLENEVELGLGEVNLALEVLDDAVAAANGVGGAGVGLEDDGAHGVVLGDGGVELPDDLG 102

Query: 70  DVADAEELVGVQELALPVVGEVWGKNAVRGALPALVFAGGAGL 112
           DVADAEELV V+EL L VVGEV G+NAVRGALPALV A  A L
Sbjct: 103 DVADAEELVRVEELPLRVVGEVRGENAVRGALPALVLACSASL 145

BLAST of MS025785 vs. NCBI nr
Match: CAN78640.1 (hypothetical protein VITISV_031739 [Vitis vinifera])

HSP 1 Score: 114.0 bits (284), Expect = 1.0e-21
Identity = 65/106 (61.32%), Postives = 78/106 (73.58%), Query Frame = 0

Query: 7   ADGELVEDDVELGLAILDLTLEVADDAVAAADGVEGADVGLEDDGTHGLFLLEGVEVLDD 66
           A G+++ED VEL L +LDL LEV DD VA ADGV GADV LE+DG HGL L+  VEV DD
Sbjct: 828 AYGQVMEDKVELRLGVLDLALEVTDDTVATADGVGGADVRLENDGAHGLVLVRRVEVADD 887

Query: 67  LGDVADAEELVGVQELALPVVGEVWGKNAVRGALPALVFAGGAGLG 113
           LGDVAD ++ + V+ELAL  V ++ G+NAVRGA   LVFA  A LG
Sbjct: 888 LGDVADPKQFMAVEELALATVRKIRGENAVRGAFSTLVFASLASLG 933

BLAST of MS025785 vs. NCBI nr
Match: RWW56882.1 (hypothetical protein BHE74_00036373 [Ensete ventricosum])

HSP 1 Score: 113.6 bits (283), Expect = 1.3e-21
Identity = 76/135 (56.30%), Postives = 90/135 (66.67%), Query Frame = 0

Query: 3   SVDLADGELVEDDVELGLAILDLTLEVADDAVAAADGVEGADVGLEDDGTHGLFLLEGVE 62
           S+  ADGEL + + EL    LDL LEVADDAVA ADG+E   +GL  DG HG  +L G+E
Sbjct: 109 SLRTADGELPQHEGELIGVALDLVLEVADDAVATADGIESTHIGLVYDGFHGFGMLVGIE 168

Query: 63  VLDDLGDVADAEELVGVQELALPVVGEVWGKNAVRGALPALVFAGGAGLG----GGGGRR 122
           V DD  DVADAE+ VGV+EL L V  +V G+ AV  AL ALVFAGGAGLG    GGGG  
Sbjct: 169 VADDFEDVADAEQAVGVEELVLLVGRKVRGEAAVGVALAALVFAGGAGLGCGGLGGGGGG 228

Query: 123 GGGRRRVGSAVVVGA 134
           GGG R+ G  V+  +
Sbjct: 229 GGGGRKAGGGVLAAS 243

BLAST of MS025785 vs. NCBI nr
Match: RWV86912.1 (hypothetical protein GW17_00051143, partial [Ensete ventricosum])

HSP 1 Score: 113.6 bits (283), Expect = 1.3e-21
Identity = 76/135 (56.30%), Postives = 90/135 (66.67%), Query Frame = 0

Query: 3   SVDLADGELVEDDVELGLAILDLTLEVADDAVAAADGVEGADVGLEDDGTHGLFLLEGVE 62
           S+  ADGEL + + EL    LDL LEVADDAVA ADG+E   +GL  DG HG  +L G+E
Sbjct: 49  SLRTADGELPQHEGELIGVALDLVLEVADDAVATADGIESTHIGLVYDGFHGFGMLVGIE 108

Query: 63  VLDDLGDVADAEELVGVQELALPVVGEVWGKNAVRGALPALVFAGGAGLG----GGGGRR 122
           V DD  DVADAE+ VGV+EL L V  +V G+ AV  AL ALVFAGGAGLG    GGGG  
Sbjct: 109 VADDFEDVADAEQAVGVEELVLLVGRKVRGEAAVGVALAALVFAGGAGLGCGGLGGGGGG 168

Query: 123 GGGRRRVGSAVVVGA 134
           GGG R+ G  V+  +
Sbjct: 169 GGGGRKAGGGVLAAS 183

BLAST of MS025785 vs. NCBI nr
Match: PON96154.1 (hypothetical protein TorRG33x02_080840 [Trema orientale])

HSP 1 Score: 113.6 bits (283), Expect = 1.3e-21
Identity = 70/103 (67.96%), Postives = 80/103 (77.67%), Query Frame = 0

Query: 10  ELVEDDVELGLAILDLTLEVADDAVAAADGVEGADVGLEDDGTHGLFL-LEGVEVLDDLG 69
           E++ED+VELGL  ++L LEV DDAVAAA+GV GA VGLEDDG HG+     GVE+ DDLG
Sbjct: 45  EMLEDEVELGLGEVNLALEVLDDAVAAANGVGGARVGLEDDGAHGVVPGGGGVELPDDLG 104

Query: 70  DVADAEELVGVQELALPVVGEVWGKNAVRGALPALVFAGGAGL 112
           DVADAEELV V+EL L VVGEV G+NAV G LPALV A  A L
Sbjct: 105 DVADAEELVRVEELPLRVVGEVRGQNAVGGTLPALVLACSASL 147

BLAST of MS025785 vs. ExPASy TrEMBL
Match: A0A2P5BH77 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_239400 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 5.3e-24
Identity = 72/103 (69.90%), Postives = 84/103 (81.55%), Query Frame = 0

Query: 10  ELVEDDVELGLAILDLTLEVADDAVAAADGVEGADVGLEDDGTHGLFLLE-GVEVLDDLG 69
           E++E++VELGL  ++L LEV DDAVAAA+GV GA VGLEDDG HG+ L + GVE+ DDLG
Sbjct: 43  EMLENEVELGLGEVNLALEVLDDAVAAANGVGGAGVGLEDDGAHGVVLGDGGVELPDDLG 102

Query: 70  DVADAEELVGVQELALPVVGEVWGKNAVRGALPALVFAGGAGL 112
           DVADAEELV V+EL L VVGEV G+NAVRGALPALV A  A L
Sbjct: 103 DVADAEELVRVEELPLRVVGEVRGENAVRGALPALVLACSASL 145

BLAST of MS025785 vs. ExPASy TrEMBL
Match: A5B4B4 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_031739 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 4.9e-22
Identity = 65/106 (61.32%), Postives = 78/106 (73.58%), Query Frame = 0

Query: 7   ADGELVEDDVELGLAILDLTLEVADDAVAAADGVEGADVGLEDDGTHGLFLLEGVEVLDD 66
           A G+++ED VEL L +LDL LEV DD VA ADGV GADV LE+DG HGL L+  VEV DD
Sbjct: 828 AYGQVMEDKVELRLGVLDLALEVTDDTVATADGVGGADVRLENDGAHGLVLVRRVEVADD 887

Query: 67  LGDVADAEELVGVQELALPVVGEVWGKNAVRGALPALVFAGGAGLG 113
           LGDVAD ++ + V+ELAL  V ++ G+NAVRGA   LVFA  A LG
Sbjct: 888 LGDVADPKQFMAVEELALATVRKIRGENAVRGAFSTLVFASLASLG 933

BLAST of MS025785 vs. ExPASy TrEMBL
Match: A0A444CM14 (Uncharacterized protein (Fragment) OS=Ensete ventricosum OX=4639 GN=GW17_00051143 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 6.5e-22
Identity = 76/135 (56.30%), Postives = 90/135 (66.67%), Query Frame = 0

Query: 3   SVDLADGELVEDDVELGLAILDLTLEVADDAVAAADGVEGADVGLEDDGTHGLFLLEGVE 62
           S+  ADGEL + + EL    LDL LEVADDAVA ADG+E   +GL  DG HG  +L G+E
Sbjct: 49  SLRTADGELPQHEGELIGVALDLVLEVADDAVATADGIESTHIGLVYDGFHGFGMLVGIE 108

Query: 63  VLDDLGDVADAEELVGVQELALPVVGEVWGKNAVRGALPALVFAGGAGLG----GGGGRR 122
           V DD  DVADAE+ VGV+EL L V  +V G+ AV  AL ALVFAGGAGLG    GGGG  
Sbjct: 109 VADDFEDVADAEQAVGVEELVLLVGRKVRGEAAVGVALAALVFAGGAGLGCGGLGGGGGG 168

Query: 123 GGGRRRVGSAVVVGA 134
           GGG R+ G  V+  +
Sbjct: 169 GGGGRKAGGGVLAAS 183

BLAST of MS025785 vs. ExPASy TrEMBL
Match: A0A2P5FEG2 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_080840 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 6.5e-22
Identity = 70/103 (67.96%), Postives = 80/103 (77.67%), Query Frame = 0

Query: 10  ELVEDDVELGLAILDLTLEVADDAVAAADGVEGADVGLEDDGTHGLFL-LEGVEVLDDLG 69
           E++ED+VELGL  ++L LEV DDAVAAA+GV GA VGLEDDG HG+     GVE+ DDLG
Sbjct: 45  EMLEDEVELGLGEVNLALEVLDDAVAAANGVGGARVGLEDDGAHGVVPGGGGVELPDDLG 104

Query: 70  DVADAEELVGVQELALPVVGEVWGKNAVRGALPALVFAGGAGL 112
           DVADAEELV V+EL L VVGEV G+NAV G LPALV A  A L
Sbjct: 105 DVADAEELVRVEELPLRVVGEVRGQNAVGGTLPALVLACSASL 147

BLAST of MS025785 vs. ExPASy TrEMBL
Match: A0A427AK94 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00016981 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 8.4e-22
Identity = 75/135 (55.56%), Postives = 90/135 (66.67%), Query Frame = 0

Query: 3   SVDLADGELVEDDVELGLAILDLTLEVADDAVAAADGVEGADVGLEDDGTHGLFLLEGVE 62
           S+  ADGEL + + EL    LDL LEVADDAVA ADG+E   +GL  DG HG  +L G+E
Sbjct: 61  SLRTADGELPQHEGELIGVALDLVLEVADDAVATADGIESTHIGLVYDGFHGFGMLVGIE 120

Query: 63  VLDDLGDVADAEELVGVQELALPVVGEVWGKNAVRGALPALVFAGGAGLG----GGGGRR 122
           V DD  D+ADAE+ VGV+EL L V  +V G+ AV  AL ALVFAGGAGLG    GGGG  
Sbjct: 121 VADDFEDIADAEQAVGVEELVLLVGRKVRGEAAVGVALAALVFAGGAGLGCGGLGGGGGG 180

Query: 123 GGGRRRVGSAVVVGA 134
           GGG R+ G  V+  +
Sbjct: 181 GGGGRKAGGGVLAAS 195

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PON48152.11.1e-2369.90hypothetical protein PanWU01x14_239400 [Parasponia andersonii][more]
CAN78640.11.0e-2161.32hypothetical protein VITISV_031739 [Vitis vinifera][more]
RWW56882.11.3e-2156.30hypothetical protein BHE74_00036373 [Ensete ventricosum][more]
RWV86912.11.3e-2156.30hypothetical protein GW17_00051143, partial [Ensete ventricosum][more]
PON96154.11.3e-2167.96hypothetical protein TorRG33x02_080840 [Trema orientale][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2P5BH775.3e-2469.90Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_239400 PE... [more]
A5B4B44.9e-2261.32Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_031739 PE=4 SV=1[more]
A0A444CM146.5e-2256.30Uncharacterized protein (Fragment) OS=Ensete ventricosum OX=4639 GN=GW17_0005114... [more]
A0A2P5FEG26.5e-2267.96Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_080840 PE=4 SV... [more]
A0A427AK948.4e-2255.56Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00016981 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS025785.1MS025785.1mRNA