MS025760 (gene) Bitter gourd (TR) v1

Overview


Name	MS025760
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	serine-rich protein-related
Location	scaffold813: 871646 .. 871939 (+)
RNA-Seq Expression	MS025760
Synteny	MS025760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACCAAAACCGCTCCCTCCTCCTCCGCCTCCCGCCTCTGCCTCTGTGCTCCGACCACCCATCCCGGCTCTTTCCGGTGCAGCTTCCACCGCCGTCCGCGTAAGACCTCAGACAAATCCAAGGCCGCAGCCGCGAGCGGCGGCGTCGATTGGAACAAGACCGATCTCGTTAAGGCGTTTCTGATGCAGATCATCAAACCGTCGAGTCACGATCTCCAGAGGAGGAGGAATTTCCAGCCGAAACCCTCCCGATTCTGTAATGTCGGCTCCGGTGGATTGGCGGTTTCTTGA

mRNA sequence

ATGGCGACCAAAACCGCTCCCTCCTCCTCCGCCTCCCGCCTCTGCCTCTGTGCTCCGACCACCCATCCCGGCTCTTTCCGGTGCAGCTTCCACCGCCGTCCGCGTAAGACCTCAGACAAATCCAAGGCCGCAGCCGCGAGCGGCGGCGTCGATTGGAACAAGACCGATCTCGTTAAGGCGTTTCTGATGCAGATCATCAAACCGTCGAGTCACGATCTCCAGAGGAGGAGGAATTTCCAGCCGAAACCCTCCCGATTCTGTAATGTCGGCTCCGGTGGATTGGCGGTTTCTTGA

Coding sequence (CDS)

ATGGCGACCAAAACCGCTCCCTCCTCCTCCGCCTCCCGCCTCTGCCTCTGTGCTCCGACCACCCATCCCGGCTCTTTCCGGTGCAGCTTCCACCGCCGTCCGCGTAAGACCTCAGACAAATCCAAGGCCGCAGCCGCGAGCGGCGGCGTCGATTGGAACAAGACCGATCTCGTTAAGGCGTTTCTGATGCAGATCATCAAACCGTCGAGTCACGATCTCCAGAGGAGGAGGAATTTCCAGCCGAAACCCTCCCGATTCTGTAATGTCGGCTCCGGTGGATTGGCGGTTTCTTGA

Protein sequence

MATKTAPSSSASRLCLCAPTTHPGSFRCSFHRRPRKTSDKSKAAAASGGVDWNKTDLVKAFLMQIIKPSSHDLQRRRNFQPKPSRFCNVGSGGLAVS

Homology

[Close]

BLAST of MS025760 vs. NCBI nr
Match: XP_022151454.1 (uncharacterized protein LOC111019381 [Momordica charantia])

HSP 1 Score: 190.7 bits (483), Expect = 6.1e-45
Identity = 95/98 (96.94%), Postives = 95/98 (96.94%), Query Frame = 0


Query: 1  MATKTAPSS-SASRLCLCAPTTHPGSFRCSFHRRPRKTSDKSKAAAASGGVDWNKTDLVK 60
          MATKTAPSS SASRLCLCAPTTHPGSFRCS HRRPRK SDKSKAAAASGGVDWNKTDLVK
Sbjct: 1  MATKTAPSSASASRLCLCAPTTHPGSFRCSLHRRPRKASDKSKAAAASGGVDWNKTDLVK 60

Query: 61 AFLMQIIKPSSHDLQRRRNFQPKPSRFCNVGSGGLAVS 98
          AFLMQIIKPSSHDLQRRRNFQPKPSRFCNVGSGGLAVS
Sbjct: 61 AFLMQIIKPSSHDLQRRRNFQPKPSRFCNVGSGGLAVS 98

[Close]

BLAST of MS025760 vs. NCBI nr
Match: KAG6593379.1 (hypothetical protein SDJN03_12855, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 128.3 bits (321), Expect = 3.7e-26
Identity = 71/100 (71.00%), Postives = 74/100 (74.00%), Query Frame = 0


Query: 1  MATKTAPSSSASRLCLCAPTTHPGSFRCSFHRRPRKTSDKSKAAAASGGVD--WNKTDLV 60
          MA KTAPSS   RLCLCAPTTHPGSFRCS HRR RK S+K       G      + TDLV
Sbjct: 1  MANKTAPSS--RRLCLCAPTTHPGSFRCSLHRRMRKASNKMPPLPPPGNQSKAVSATDLV 60

Query: 61 KAFLMQIIKPSSHDLQRRRNFQPKPSRFCNVGSG-GLAVS 98
          KAFLMQ+IKPSS DLQRRRNFQPKPSRFCN  S  GLAVS
Sbjct: 61 KAFLMQVIKPSSQDLQRRRNFQPKPSRFCNAASDYGLAVS 98

[Close]

BLAST of MS025760 vs. NCBI nr
Match: KAG7025727.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 124.8 bits (312), Expect = 4.1e-25
Identity = 69/98 (70.41%), Postives = 72/98 (73.47%), Query Frame = 0


Query: 1  MATKTAPSSSASRLCLCAPTTHPGSFRCSFHRRPRKTSDKSKAAAASGGVD--WNKTDLV 60
          MA KTAPSS   RLCLCAPTTHPGSFRCS HRR RK S+K       G      + TDLV
Sbjct: 1  MANKTAPSS--RRLCLCAPTTHPGSFRCSLHRRMRKASNKMPPLPPPGNQSKAVSATDLV 60

Query: 61 KAFLMQIIKPSSHDLQRRRNFQPKPSRFCNVGSG-GLA 96
          KAFLMQ+IKPSS DLQRRRNFQPKPSRFCN  S  GLA
Sbjct: 61 KAFLMQVIKPSSQDLQRRRNFQPKPSRFCNAASDYGLA 96

[Close]

BLAST of MS025760 vs. NCBI nr
Match: KAG7014157.1 (hypothetical protein SDJN02_24331, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 116.7 bits (291), Expect = 1.1e-22
Identity = 67/99 (67.68%), Postives = 70/99 (70.71%), Query Frame = 0


Query: 1   MATKTAPSSSASRLCLCAPTTHPGSFRCSFHRRPRKTSDK--------SKAAAASGGVDW 60
           MA KTA   S+SRLCLCAPT+HPGSFRCS HRRPRK SDK        SKAA A+     
Sbjct: 104 MANKTA---SSSRLCLCAPTSHPGSFRCSLHRRPRKASDKTTLSRGSQSKAATATS---- 163

Query: 61  NKTDLVKAFLMQIIKPSSHDLQRRRNFQPKPSRFCNVGS 92
             T L K FLMQ IKPSSHDL RRRNFQPKPSRFCN  S
Sbjct: 164 TATGLFKVFLMQAIKPSSHDL-RRRNFQPKPSRFCNAAS 194

[Close]

BLAST of MS025760 vs. NCBI nr
Match: EOY25961.1 (Uncharacterized protein TCM_027325 [Theobroma cacao])

HSP 1 Score: 116.7 bits (291), Expect = 1.1e-22
Identity = 65/110 (59.09%), Postives = 76/110 (69.09%), Query Frame = 0


Query: 1   MATKTAPSSSASRLCLCAPTTHPGSFRCSFHRRPRKTSDKSKAAAASGGVD--------- 60
           MATK + S S++R CLC+PTTHPGSFRCSFHR   K S KS AA  +  V+         
Sbjct: 1   MATKRSASPSSARTCLCSPTTHPGSFRCSFHRSFGKASTKSAAAPHANRVESKAATMMMM 60

Query: 61  --WNKTDLVKAFLMQIIKPSSHDLQRRRNFQPKPSRFC--NVGSGGLAVS 98
              +K  L+KAFLMQIIKPSSHDLQRRRNFQ KP+RFC  N  + G+AVS
Sbjct: 61  TTASKACLIKAFLMQIIKPSSHDLQRRRNFQRKPTRFCPLNSSANGVAVS 110

[Close]

BLAST of MS025760 vs. ExPASy TrEMBL
Match: A0A6J1DD51 (uncharacterized protein LOC111019381 OS=Momordica charantia OX=3673 GN=LOC111019381 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 2.9e-45
Identity = 95/98 (96.94%), Postives = 95/98 (96.94%), Query Frame = 0


Query: 1  MATKTAPSS-SASRLCLCAPTTHPGSFRCSFHRRPRKTSDKSKAAAASGGVDWNKTDLVK 60
          MATKTAPSS SASRLCLCAPTTHPGSFRCS HRRPRK SDKSKAAAASGGVDWNKTDLVK
Sbjct: 1  MATKTAPSSASASRLCLCAPTTHPGSFRCSLHRRPRKASDKSKAAAASGGVDWNKTDLVK 60

Query: 61 AFLMQIIKPSSHDLQRRRNFQPKPSRFCNVGSGGLAVS 98
          AFLMQIIKPSSHDLQRRRNFQPKPSRFCNVGSGGLAVS
Sbjct: 61 AFLMQIIKPSSHDLQRRRNFQPKPSRFCNVGSGGLAVS 98

[Close]

BLAST of MS025760 vs. ExPASy TrEMBL
Match: A0A061G8R4 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_027325 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 5.4e-23
Identity = 65/110 (59.09%), Postives = 76/110 (69.09%), Query Frame = 0


Query: 1   MATKTAPSSSASRLCLCAPTTHPGSFRCSFHRRPRKTSDKSKAAAASGGVD--------- 60
           MATK + S S++R CLC+PTTHPGSFRCSFHR   K S KS AA  +  V+         
Sbjct: 1   MATKRSASPSSARTCLCSPTTHPGSFRCSFHRSFGKASTKSAAAPHANRVESKAATMMMM 60

Query: 61  --WNKTDLVKAFLMQIIKPSSHDLQRRRNFQPKPSRFC--NVGSGGLAVS 98
              +K  L+KAFLMQIIKPSSHDLQRRRNFQ KP+RFC  N  + G+AVS
Sbjct: 61  TTASKACLIKAFLMQIIKPSSHDLQRRRNFQRKPTRFCPLNSSANGVAVS 110

[Close]

BLAST of MS025760 vs. ExPASy TrEMBL
Match: A0A5B7BSA6 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_039464 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 9.2e-23
Identity = 62/101 (61.39%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 1   MATKTAPSSSASRLCLCAPTTHPGSFRCSFHRRPRKTSDKSKA--AAASGGVDWNKTDLV 60
           MA++ + SSS++R CLC+PTTHPGSFRCS HR  RK S +S A           +KT L+
Sbjct: 22  MASRNSSSSSSTRTCLCSPTTHPGSFRCSLHRSFRKLSGRSTAHINRLESSKMMSKTSLL 81

Query: 61  KAFLMQIIKPSSHDLQRRRNFQPKPSRFC--NVGSGGLAVS 98
           KAFLM IIKPSSHDLQRRRNFQPKP+RFC  N    G+AVS
Sbjct: 82  KAFLMHIIKPSSHDLQRRRNFQPKPTRFCMMNGNETGVAVS 122

[Close]

BLAST of MS025760 vs. ExPASy TrEMBL
Match: A0A1Q3BSF8 (Uncharacterized protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_14404 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 7.8e-22
Identity = 58/96 (60.42%), Postives = 70/96 (72.92%), Query Frame = 0


Query: 8  SSSASRLCLCAPTTHPGSFRCSFHRRPRKTSDKSKAAAA-------SGGVDWNKTDLVKA 67
          SSS+SR CLC+PTTHPGSFRC+ HR  +K S KS + +        S  +  +KT++VKA
Sbjct: 2  SSSSSRTCLCSPTTHPGSFRCALHRNSQKVSGKSTSVSINVNRLMNSEVMITSKTNVVKA 61

Query: 68 FLMQIIKPSSHDLQRRRNFQPKPSRFCNVGSGGLAV 97
          FLMQIIKPSS DLQRRRNFQPKP+RFC + S G  V
Sbjct: 62 FLMQIIKPSSRDLQRRRNFQPKPTRFCQMCSNGHGV 97

[Close]

BLAST of MS025760 vs. ExPASy TrEMBL
Match: A0A6P6BJ71 (uncharacterized protein LOC111318518 OS=Durio zibethinus OX=66656 GN=LOC111318518 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 7.8e-22
Identity = 64/117 (54.70%), Postives = 76/117 (64.96%), Query Frame = 0


Query: 1   MATKTAPSSSASRLCLCAPTTHPGSFRCSFHRRPRKTSDK------------SKAA---- 60
           MATK++ S S++R CLC+PT HPGSFRCS HR   K S K            SKAA    
Sbjct: 1   MATKSSSSPSSTRACLCSPTKHPGSFRCSLHRSLGKVSSKSATPHVNRQREESKAAMMMM 60

Query: 61  --AASGGVDWNKTDLVKAFLMQIIKPSSHDLQRRRNFQPKPSRFC--NVGSGGLAVS 98
             A+      +KT L+KAFLMQIIKPSSHD+QRRRNF PKP+RFC  N  + G+AVS
Sbjct: 61  MTASPSSSSSSKTSLIKAFLMQIIKPSSHDIQRRRNFHPKPTRFCPLNSSNNGVAVS 117

[Close]

BLAST of MS025760 vs. TAIR 10
Match: AT5G11090.1 (serine-rich protein-related )

HSP 1 Score: 67.4 bits (163), Expect = 7.2e-12
Identity = 33/88 (37.50%), Postives = 50/88 (56.82%), Query Frame = 0


Query: 12  SRLCLCAPTTHPGSFRCSFHRRPRKTSDKSKAAAASGGVDWNKT--------------DL 71
           SR C+C+PTTHPGSFRCS H+       +  A+  + G++  ++              + 
Sbjct: 120 SRRCMCSPTTHPGSFRCSLHKNVANPHGQGTASYTTNGLNMRRSAMTNSLVRIGGVEGEW 179

Query: 72  VKAFLMQIIKPSSHDLQRRRNFQPKPSR 86
           V+  L  +I+PSSH L+RR  +QP+PSR
Sbjct: 180 VRRALTTLIRPSSHHLKRRAAYQPRPSR 207

[Close]

BLAST of MS025760 vs. TAIR 10
Match: AT5G25280.1 (serine-rich protein-related )

HSP 1 Score: 63.2 bits (152), Expect = 1.4e-10
Identity = 30/91 (32.97%), Postives = 50/91 (54.95%), Query Frame = 0


Query: 13  RLCLCAPTTHPGSFRCSFHRRPRKTSDKSKAAAASGGVDWNKT--------------DLV 72
           R C+C+PTTHPGSFRCS H+       +  A+  + G++  ++              + V
Sbjct: 124 RRCMCSPTTHPGSFRCSLHKNVANPHGQGTASYTTNGLNMRRSAMTNSLVRIGGVEGEWV 183

Query: 73  KAFLMQIIKPSSHDLQRRRNFQPKPSRFCNV 90
           +  L  +I+PSSH L+RR  ++P+ SR  ++
Sbjct: 184 RRALTTLIRPSSHQLKRRSAYEPRRSRLASM 214

[Close]

BLAST of MS025760 vs. TAIR 10
Match: AT5G25280.2 (serine-rich protein-related )

HSP 1 Score: 63.2 bits (152), Expect = 1.4e-10
Identity = 30/91 (32.97%), Postives = 50/91 (54.95%), Query Frame = 0


Query: 13  RLCLCAPTTHPGSFRCSFHRRPRKTSDKSKAAAASGGVDWNKT--------------DLV 72
           R C+C+PTTHPGSFRCS H+       +  A+  + G++  ++              + V
Sbjct: 124 RRCMCSPTTHPGSFRCSLHKNVANPHGQGTASYTTNGLNMRRSAMTNSLVRIGGVEGEWV 183

Query: 73  KAFLMQIIKPSSHDLQRRRNFQPKPSRFCNV 90
           +  L  +I+PSSH L+RR  ++P+ SR  ++
Sbjct: 184 RRALTTLIRPSSHQLKRRSAYEPRRSRLASM 214

[Close]

BLAST of MS025760 vs. TAIR 10
Match: AT5G20370.1 (serine-rich protein-related )

HSP 1 Score: 55.1 bits (131), Expect = 3.7e-08
Identity = 35/102 (34.31%), Postives = 48/102 (47.06%), Query Frame = 0


Query: 13  RLCLCAPTTHPGSFRCSFHRRPRKTSDKSKAAA-------------ASGGVDWNKTDLV- 72
           R CLC+PTTHPGSFRCSFHRR      K+ A++              + G++  K  L+ 
Sbjct: 69  RKCLCSPTTHPGSFRCSFHRRLEHEKSKTLASSTVKRNNRGDNTIRVNVGLNLRKLALMN 128

Query: 73  --------------KAFLMQIIKPSSHDLQRRRNFQPKPSRF 87
                         ++    + KPSS    RR  F+P+ SRF
Sbjct: 129 SLAKIGSVEAERFRRSLAANLAKPSSLHSHRRPEFRPRLSRF 170

[Close]

BLAST of MS025760 vs. TAIR 10
Match: AT3G13227.1 (serine-rich protein-related )

HSP 1 Score: 48.1 bits (113), Expect = 4.5e-06
Identity = 26/48 (54.17%), Postives = 30/48 (62.50%), Query Frame = 0


Query: 8   SSSASRLCLCAPTTHPGSFRCSFHRR------PRKTSDKSKAAAASGG 50
           SSS  + CLCAPTTHPGSFRC +HRR       R TS  S  +  +GG
Sbjct: 58  SSSVRQNCLCAPTTHPGSFRCRYHRRNAGLGMSRGTSVPSNLSMLAGG 105

The following BLAST results are available for this feature:

BLAST of MS025760 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151454.1	6.1e-45	96.94	uncharacterized protein LOC111019381 [Momordica charantia]	[more]
KAG6593379.1	3.7e-26	71.00	hypothetical protein SDJN03_12855, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7025727.1	4.1e-25	70.41	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]
KAG7014157.1	1.1e-22	67.68	hypothetical protein SDJN02_24331, partial [Cucurbita argyrosperma subsp. argyro...	[more]
EOY25961.1	1.1e-22	59.09	Uncharacterized protein TCM_027325 [Theobroma cacao]	[more]

BLAST of MS025760 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS025760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DD51	2.9e-45	96.94	uncharacterized protein LOC111019381 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A061G8R4	5.4e-23	59.09	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_027325 PE=4 SV=1	[more]
A0A5B7BSA6	9.2e-23	61.39	Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_039464...	[more]
A0A1Q3BSF8	7.8e-22	60.42	Uncharacterized protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3...	[more]
A0A6P6BJ71	7.8e-22	54.70	uncharacterized protein LOC111318518 OS=Durio zibethinus OX=66656 GN=LOC11131851...	[more]

BLAST of MS025760 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G11090.1	7.2e-12	37.50	serine-rich protein-related	[more]
AT5G25280.1	1.4e-10	32.97	serine-rich protein-related	[more]
AT5G25280.2	1.4e-10	32.97	serine-rich protein-related	[more]
AT5G20370.1	3.7e-08	34.31	serine-rich protein-related	[more]
AT3G13227.1	4.5e-06	54.17	serine-rich protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..48
None	No IPR available	PANTHER	PTHR33132	OSJNBB0118P14.9 PROTEIN	coord: 4..90
None	No IPR available	PANTHER	PTHR33132:SF63	SUBFAMILY NOT NAMED	coord: 4..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS025760.1	MS025760.1	mRNA