MS025751 (gene) Bitter gourd (TR) v1

Overview


Name	MS025751
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	40S ribosomal protein S12
Location	scaffold813: 780331 .. 781417 (-)
RNA-Seq Expression	MS025751
Synteny	MS025751

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTATGCAAATTGCATTGCAGGATGCCATGGAGGAATATTATAACCCTCGTTTTGTTTTCTTTTGCAGTGATGAAGGTGCAGTTGTGGTTGAGGCTCCGGCCCCAGCTCTAGGTGAGCCAATGGACATTGAGACTGCTTTGCAACTTGTCCTTAGAAAATCATTAGCTCACGGTGGGCTTGTTCGAGGCCTACACGAGAGTGCTAAAGCTATTGAGAAGCATGCTGCTCAGCTTTGTGTATTGGGAGAAGACTGCAACCAGCCTGATTATGTGAAACTAGTCAAAGCTCTTTGTGCAGAGCACAATGTTAGCTTAATGACAGTTCCAAGTGCAAAGACCCTCGGCGAGTGGGCTGGTGTAAGTCTTTGATCTTATTTAGACATAATATATCTTAACATTCTACCTTGATATAATTATTTGACATACTTTACTTTTTGCTTGTTCTTTCTTGTTCTCTGCAACCATTATGTCCTGTACTGCACTCATTTGATTGAACCTACACTTGTCATTATTTAGATGCTGTAAATGTTCTAGATTATATAAAGATATATACAATTTCTTTATGCAAAATCTAGGGAAATCATTCTGATTTTCACCTAAAATGTCCTGCTAACACCACCATGAAAACTGGGTGGGTGTGGTTGTCCTTGGGTATAGGAAGCAAAGCTCCGACTCCCATTTATATAAAAAAACACCACCATGAGAACTTACATGATAACAAGTTCTAATATTTGCAGTCTACACCATCTGTTTAAATTTGATATCAAGGAGCAATCAATATACATCTACCAATATTACAACCAAAAGCTTGCCCTTGTGTATTTTCTGGATAAGTCAGTTTCTTCATATTTGGTCTAATGCAGCTATGCAAGATTGATTCTGAAGGAAAGGCAAGGAAGGTTGTTGGCTGCTCTTGTGTTGTAGTCAAGGTTCGTCTTCTGTCCATCACTTCCACATAAAATGTTGTATTCCTCATCTCTTAAAAGATATTGTTTAACTTGAAAGTTAAATCTGTTATCTCCAGGACTTCGGCGAGGATCACGAGGCACTTCACATTGTCCAGAAGCATGTGAGTTCAAATTGA

mRNA sequence

ATGGCTATGCAAATTGCATTGCAGGATGCCATGGAGGAATATTATAACCCTCGTTTTGTTTTCTTTTGCAGTGATGAAGGTGCAGTTGTGGTTGAGGCTCCGGCCCCAGCTCTAGGTGAGCCAATGGACATTGAGACTGCTTTGCAACTTGTCCTTAGAAAATCATTAGCTCACGGTGGGCTTGTTCGAGGCCTACACGAGAGTGCTAAAGCTATTGAGAAGCATGCTGCTCAGCTTTGTGTATTGGGAGAAGACTGCAACCAGCCTGATTATGTGAAACTAGTCAAAGCTCTTTGTGCAGAGCACAATGTTAGCTTAATGACAGTTCCAAGTGCAAAGACCCTCGGCGAGTGGGCTGGTCTATGCAAGATTGATTCTGAAGGAAAGGCAAGGAAGGTTGTTGGCTGCTCTTGTGTTGTAGTCAAGGACTTCGGCGAGGATCACGAGGCACTTCACATTGTCCAGAAGCATGTGAGTTCAAATTGA

Coding sequence (CDS)

ATGGCTATGCAAATTGCATTGCAGGATGCCATGGAGGAATATTATAACCCTCGTTTTGTTTTCTTTTGCAGTGATGAAGGTGCAGTTGTGGTTGAGGCTCCGGCCCCAGCTCTAGGTGAGCCAATGGACATTGAGACTGCTTTGCAACTTGTCCTTAGAAAATCATTAGCTCACGGTGGGCTTGTTCGAGGCCTACACGAGAGTGCTAAAGCTATTGAGAAGCATGCTGCTCAGCTTTGTGTATTGGGAGAAGACTGCAACCAGCCTGATTATGTGAAACTAGTCAAAGCTCTTTGTGCAGAGCACAATGTTAGCTTAATGACAGTTCCAAGTGCAAAGACCCTCGGCGAGTGGGCTGGTCTATGCAAGATTGATTCTGAAGGAAAGGCAAGGAAGGTTGTTGGCTGCTCTTGTGTTGTAGTCAAGGACTTCGGCGAGGATCACGAGGCACTTCACATTGTCCAGAAGCATGTGAGTTCAAATTGA

Protein sequence

MAMQIALQDAMEEYYNPRFVFFCSDEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQKHVSSN

Homology

[Close]

BLAST of MS025751 vs. NCBI nr
Match: XP_022152391.1 (40S ribosomal protein S12-like [Momordica charantia])

HSP 1 Score: 278.1 bits (710), Expect = 4.8e-71
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 25  DEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 84
           DEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE
Sbjct: 4   DEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 63

Query: 85  DCNQPDYVKLVKALCAEHNVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 144
           DCNQPDYVKLVKALCAEHNVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF
Sbjct: 64  DCNQPDYVKLVKALCAEHNVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 123

Query: 145 GEDHEALHIVQKHVSSN 162
           GEDHEALHIVQKHVSSN
Sbjct: 124 GEDHEALHIVQKHVSSN 140

[Close]

BLAST of MS025751 vs. NCBI nr
Match: XP_038901505.1 (40S ribosomal protein S12-like [Benincasa hispida])

HSP 1 Score: 277.3 bits (708), Expect = 8.2e-71
Identity = 136/138 (98.55%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 24  SDEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG 83
           +DEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG
Sbjct: 3   ADEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG 62

Query: 84  EDCNQPDYVKLVKALCAEHNVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD 143
           EDCNQPDYVKLVKALCAEHNV+LMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD
Sbjct: 63  EDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD 122

Query: 144 FGEDHEALHIVQKHVSSN 162
           FGEDHEALHIVQKHVSSN
Sbjct: 123 FGEDHEALHIVQKHVSSN 140

[Close]

BLAST of MS025751 vs. NCBI nr
Match: XP_023004118.1 (40S ribosomal protein S12-like [Cucurbita maxima] >XP_023514414.1 40S ribosomal protein S12-like [Cucurbita pepo subsp. pepo] >KAG6593366.1 40S ribosomal protein S12, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025714.1 40S ribosomal protein S12, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 276.9 bits (707), Expect = 1.1e-70
Identity = 135/138 (97.83%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 24  SDEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG 83
           +DEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG
Sbjct: 3   ADEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG 62

Query: 84  EDCNQPDYVKLVKALCAEHNVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD 143
           EDCNQPDY+KLVKALCAEHNV+LMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD
Sbjct: 63  EDCNQPDYIKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD 122

Query: 144 FGEDHEALHIVQKHVSSN 162
           FGEDHEALHIVQKHVSSN
Sbjct: 123 FGEDHEALHIVQKHVSSN 140

[Close]

BLAST of MS025751 vs. NCBI nr
Match: XP_004147008.1 (40S ribosomal protein S12 [Cucumis sativus] >XP_008457630.1 PREDICTED: 40S ribosomal protein S12-like [Cucumis melo] >XP_031736838.1 40S ribosomal protein S12 [Cucumis sativus] >KAA0045670.1 40S ribosomal protein S12 [Cucumis melo var. makuwa] >KGN61872.1 hypothetical protein Csa_006022 [Cucumis sativus] >TYJ99613.1 40S ribosomal protein S12 [Cucumis melo var. makuwa])

HSP 1 Score: 275.8 bits (704), Expect = 2.4e-70
Identity = 135/138 (97.83%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 24  SDEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG 83
           +DEGAVV EAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG
Sbjct: 3   ADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG 62

Query: 84  EDCNQPDYVKLVKALCAEHNVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD 143
           EDCNQPDYVKLVKALCAEHNV+LMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD
Sbjct: 63  EDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD 122

Query: 144 FGEDHEALHIVQKHVSSN 162
           FGEDHEALHIVQKHVSSN
Sbjct: 123 FGEDHEALHIVQKHVSSN 140

[Close]

BLAST of MS025751 vs. NCBI nr
Match: XP_023512603.1 (40S ribosomal protein S12-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 275.4 bits (703), Expect = 3.1e-70
Identity = 135/138 (97.83%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 24  SDEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG 83
           +DEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG
Sbjct: 3   ADEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG 62

Query: 84  EDCNQPDYVKLVKALCAEHNVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD 143
           EDCNQPDYVKLVKALCAEHNV+LMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD
Sbjct: 63  EDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD 122

Query: 144 FGEDHEALHIVQKHVSSN 162
           FGEDHEALHIVQKHVSS+
Sbjct: 123 FGEDHEALHIVQKHVSSS 140

[Close]

BLAST of MS025751 vs. ExPASy Swiss-Prot
Match: Q9XHS0 (40S ribosomal protein S12 OS=Hordeum vulgare OX=4513 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 3.5e-56
Identity = 104/130 (80.00%), Postives = 119/130 (91.54%), Query Frame = 0


Query: 31  VEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPD 90
           VEAP P LGEPMD+ TALQLV++KS AH GLV+GL E+AK+IEKHAAQLCVL EDC+QPD
Sbjct: 13  VEAPTPILGEPMDLMTALQLVMKKSSAHDGLVKGLREAAKSIEKHAAQLCVLAEDCDQPD 72

Query: 91  YVKLVKALCAEHNVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEA 150
           YVKLVKALCAEHNV L+TVPSAKTLGEWAGLCKID+EGKARKVVGCSC+VVKD+GE+ E 
Sbjct: 73  YVKLVKALCAEHNVHLVTVPSAKTLGEWAGLCKIDTEGKARKVVGCSCIVVKDYGEESEG 132

Query: 151 LHIVQKHVSS 161
           L+IVQ++V S
Sbjct: 133 LNIVQQYVKS 142

[Close]

BLAST of MS025751 vs. ExPASy Swiss-Prot
Match: Q9SKZ3 (40S ribosomal protein S12-2 OS=Arabidopsis thaliana OX=3702 GN=RPS12C PE=1 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 2.6e-51
Identity = 96/129 (74.42%), Postives = 112/129 (86.82%), Query Frame = 0


Query: 33  APAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYV 92
           A A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  AQLCVL EDCNQPDYV
Sbjct: 16  AEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYV 75

Query: 93  KLVKALCAEHNVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALH 152
           KLVKALCA+H++ L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+V+KDFGE+  AL+
Sbjct: 76  KLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALN 135

Query: 153 IVQKHVSSN 162
           IV+KH+ SN
Sbjct: 136 IVKKHLDSN 144

[Close]

BLAST of MS025751 vs. ExPASy Swiss-Prot
Match: Q9S9P1 (40S ribosomal protein S12-1 OS=Arabidopsis thaliana OX=3702 GN=RPS12A PE=2 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 1.8e-49
Identity = 100/140 (71.43%), Postives = 112/140 (80.00%), Query Frame = 0


Query: 25  DEGAVVVEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLC 84
           DE A VV  P      A+ E MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  AQL 
Sbjct: 4   DEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLV 63

Query: 85  VLGEDCNQPDYVKLVKALCAEHNVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVV 144
           VL EDCNQPDYVKLVKALCA+H V L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+V
Sbjct: 64  VLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLV 123

Query: 145 VKDFGEDHEALHIVQKHVSS 161
           VKDFGE+  AL IV KH++S
Sbjct: 124 VKDFGEETTALSIVNKHIAS 143

[Close]

BLAST of MS025751 vs. ExPASy Swiss-Prot
Match: Q76I81 (40S ribosomal protein S12 OS=Bos taurus OX=9913 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.8e-36
Identity = 70/121 (57.85%), Postives = 93/121 (76.86%), Query Frame = 0


Query: 37  ALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVK 96
           A G  MD+ TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL  +C++P YVKLV+
Sbjct: 7   AAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVE 66

Query: 97  ALCAEHNVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQK 156
           ALCAEH ++L+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G++ +A  ++++
Sbjct: 67  ALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEE 126

Query: 157 H 158
           +
Sbjct: 127 Y 127

[Close]

BLAST of MS025751 vs. ExPASy Swiss-Prot
Match: P25398 (40S ribosomal protein S12 OS=Homo sapiens OX=9606 GN=RPS12 PE=1 SV=3)

HSP 1 Score: 153.7 bits (387), Expect = 1.8e-36
Identity = 70/121 (57.85%), Postives = 93/121 (76.86%), Query Frame = 0


Query: 37  ALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVK 96
           A G  MD+ TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL  +C++P YVKLV+
Sbjct: 7   AAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVE 66

Query: 97  ALCAEHNVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALHIVQK 156
           ALCAEH ++L+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G++ +A  ++++
Sbjct: 67  ALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEE 126

Query: 157 H 158
           +
Sbjct: 127 Y 127

[Close]

BLAST of MS025751 vs. ExPASy TrEMBL
Match: A0A6J1DHK5 (40S ribosomal protein S12 OS=Momordica charantia OX=3673 GN=LOC111020127 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.3e-71
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 25  DEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 84
           DEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE
Sbjct: 4   DEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGE 63

Query: 85  DCNQPDYVKLVKALCAEHNVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 144
           DCNQPDYVKLVKALCAEHNVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF
Sbjct: 64  DCNQPDYVKLVKALCAEHNVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDF 123

Query: 145 GEDHEALHIVQKHVSSN 162
           GEDHEALHIVQKHVSSN
Sbjct: 124 GEDHEALHIVQKHVSSN 140

[Close]

BLAST of MS025751 vs. ExPASy TrEMBL
Match: A0A6J1KYK1 (40S ribosomal protein S12 OS=Cucurbita maxima OX=3661 GN=LOC111497545 PE=3 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 5.2e-71
Identity = 135/138 (97.83%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 24  SDEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG 83
           +DEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG
Sbjct: 3   ADEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG 62

Query: 84  EDCNQPDYVKLVKALCAEHNVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD 143
           EDCNQPDY+KLVKALCAEHNV+LMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD
Sbjct: 63  EDCNQPDYIKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD 122

Query: 144 FGEDHEALHIVQKHVSSN 162
           FGEDHEALHIVQKHVSSN
Sbjct: 123 FGEDHEALHIVQKHVSSN 140

[Close]

BLAST of MS025751 vs. ExPASy TrEMBL
Match: A0A5D3BJY5 (40S ribosomal protein S12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G001870 PE=3 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 1.2e-70
Identity = 135/138 (97.83%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 24  SDEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG 83
           +DEGAVV EAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG
Sbjct: 3   ADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG 62

Query: 84  EDCNQPDYVKLVKALCAEHNVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD 143
           EDCNQPDYVKLVKALCAEHNV+LMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD
Sbjct: 63  EDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD 122

Query: 144 FGEDHEALHIVQKHVSSN 162
           FGEDHEALHIVQKHVSSN
Sbjct: 123 FGEDHEALHIVQKHVSSN 140

[Close]

BLAST of MS025751 vs. ExPASy TrEMBL
Match: A0A0A0LM61 (40S ribosomal protein S12 OS=Cucumis sativus OX=3659 GN=Csa_2G258680 PE=3 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 1.2e-70
Identity = 135/138 (97.83%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 24  SDEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG 83
           +DEGAVV EAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG
Sbjct: 3   ADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG 62

Query: 84  EDCNQPDYVKLVKALCAEHNVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD 143
           EDCNQPDYVKLVKALCAEHNV+LMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD
Sbjct: 63  EDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD 122

Query: 144 FGEDHEALHIVQKHVSSN 162
           FGEDHEALHIVQKHVSSN
Sbjct: 123 FGEDHEALHIVQKHVSSN 140

[Close]

BLAST of MS025751 vs. ExPASy TrEMBL
Match: A0A1S3C6L3 (40S ribosomal protein S12 OS=Cucumis melo OX=3656 GN=LOC103497279 PE=3 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 1.2e-70
Identity = 135/138 (97.83%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 24  SDEGAVVVEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG 83
           +DEGAVV EAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG
Sbjct: 3   ADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLG 62

Query: 84  EDCNQPDYVKLVKALCAEHNVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD 143
           EDCNQPDYVKLVKALCAEHNV+LMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD
Sbjct: 63  EDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKD 122

Query: 144 FGEDHEALHIVQKHVSSN 162
           FGEDHEALHIVQKHVSSN
Sbjct: 123 FGEDHEALHIVQKHVSSN 140

[Close]

BLAST of MS025751 vs. TAIR 10
Match: AT2G32060.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 203.0 bits (515), Expect = 1.8e-52
Identity = 96/129 (74.42%), Postives = 112/129 (86.82%), Query Frame = 0


Query: 33  APAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYV 92
           A A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  AQLCVL EDCNQPDYV
Sbjct: 16  AEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYV 75

Query: 93  KLVKALCAEHNVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALH 152
           KLVKALCA+H++ L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+V+KDFGE+  AL+
Sbjct: 76  KLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALN 135

Query: 153 IVQKHVSSN 162
           IV+KH+ SN
Sbjct: 136 IVKKHLDSN 144

[Close]

BLAST of MS025751 vs. TAIR 10
Match: AT2G32060.3 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 203.0 bits (515), Expect = 1.8e-52
Identity = 96/129 (74.42%), Postives = 112/129 (86.82%), Query Frame = 0


Query: 33  APAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYV 92
           A A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  AQLCVL EDCNQPDYV
Sbjct: 16  AEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYV 75

Query: 93  KLVKALCAEHNVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALH 152
           KLVKALCA+H++ L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+V+KDFGE+  AL+
Sbjct: 76  KLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALN 135

Query: 153 IVQKHVSSN 162
           IV+KH+ SN
Sbjct: 136 IVKKHLDSN 144

[Close]

BLAST of MS025751 vs. TAIR 10
Match: AT2G32060.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 203.0 bits (515), Expect = 1.8e-52
Identity = 96/129 (74.42%), Postives = 112/129 (86.82%), Query Frame = 0


Query: 33  APAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYV 92
           A A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  AQLCVL EDCNQPDYV
Sbjct: 16  AEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYV 75

Query: 93  KLVKALCAEHNVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEDHEALH 152
           KLVKALCA+H++ L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+V+KDFGE+  AL+
Sbjct: 76  KLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALN 135

Query: 153 IVQKHVSSN 162
           IV+KH+ SN
Sbjct: 136 IVKKHLDSN 144

[Close]

BLAST of MS025751 vs. TAIR 10
Match: AT1G15930.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 196.8 bits (499), Expect = 1.3e-50
Identity = 100/140 (71.43%), Postives = 112/140 (80.00%), Query Frame = 0


Query: 25  DEGAVVVEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLC 84
           DE A VV  P      A+ E MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  AQL 
Sbjct: 4   DEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLV 63

Query: 85  VLGEDCNQPDYVKLVKALCAEHNVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVV 144
           VL EDCNQPDYVKLVKALCA+H V L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+V
Sbjct: 64  VLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLV 123

Query: 145 VKDFGEDHEALHIVQKHVSS 161
           VKDFGE+  AL IV KH++S
Sbjct: 124 VKDFGEETTALSIVNKHIAS 143

[Close]

BLAST of MS025751 vs. TAIR 10
Match: AT1G15930.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 196.8 bits (499), Expect = 1.3e-50
Identity = 100/140 (71.43%), Postives = 112/140 (80.00%), Query Frame = 0


Query: 25  DEGAVVVEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLC 84
           DE A VV  P      A+ E MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  AQL 
Sbjct: 4   DEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLV 63

Query: 85  VLGEDCNQPDYVKLVKALCAEHNVSLMTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVV 144
           VL EDCNQPDYVKLVKALCA+H V L+TVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+V
Sbjct: 64  VLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLV 123

Query: 145 VKDFGEDHEALHIVQKHVSS 161
           VKDFGE+  AL IV KH++S
Sbjct: 124 VKDFGEETTALSIVNKHIAS 143

The following BLAST results are available for this feature:

BLAST of MS025751 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152391.1	4.8e-71	100.00	40S ribosomal protein S12-like [Momordica charantia]	[more]
XP_038901505.1	8.2e-71	98.55	40S ribosomal protein S12-like [Benincasa hispida]	[more]
XP_023004118.1	1.1e-70	97.83	40S ribosomal protein S12-like [Cucurbita maxima] >XP_023514414.1 40S ribosomal ...	[more]
XP_004147008.1	2.4e-70	97.83	40S ribosomal protein S12 [Cucumis sativus] >XP_008457630.1 PREDICTED: 40S ribos...	[more]
XP_023512603.1	3.1e-70	97.83	40S ribosomal protein S12-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of MS025751 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XHS0	3.5e-56	80.00	40S ribosomal protein S12 OS=Hordeum vulgare OX=4513 GN=RPS12 PE=2 SV=1	[more]
Q9SKZ3	2.6e-51	74.42	40S ribosomal protein S12-2 OS=Arabidopsis thaliana OX=3702 GN=RPS12C PE=1 SV=1	[more]
Q9S9P1	1.8e-49	71.43	40S ribosomal protein S12-1 OS=Arabidopsis thaliana OX=3702 GN=RPS12A PE=2 SV=1	[more]
Q76I81	1.8e-36	57.85	40S ribosomal protein S12 OS=Bos taurus OX=9913 GN=RPS12 PE=2 SV=1	[more]
P25398	1.8e-36	57.85	40S ribosomal protein S12 OS=Homo sapiens OX=9606 GN=RPS12 PE=1 SV=3	[more]

BLAST of MS025751 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DHK5	2.3e-71	100.00	40S ribosomal protein S12 OS=Momordica charantia OX=3673 GN=LOC111020127 PE=3 SV...	[more]
A0A6J1KYK1	5.2e-71	97.83	40S ribosomal protein S12 OS=Cucurbita maxima OX=3661 GN=LOC111497545 PE=3 SV=1	[more]
A0A5D3BJY5	1.2e-70	97.83	40S ribosomal protein S12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0LM61	1.2e-70	97.83	40S ribosomal protein S12 OS=Cucumis sativus OX=3659 GN=Csa_2G258680 PE=3 SV=1	[more]
A0A1S3C6L3	1.2e-70	97.83	40S ribosomal protein S12 OS=Cucumis melo OX=3656 GN=LOC103497279 PE=3 SV=1	[more]

BLAST of MS025751 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G32060.1	1.8e-52	74.42	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT2G32060.3	1.8e-52	74.42	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT2G32060.2	1.8e-52	74.42	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT1G15930.2	1.3e-50	71.43	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT1G15930.1	1.3e-50	71.43	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000530	Ribosomal protein S12e	PRINTS	PR00972	RIBSOMALS12E	coord: 131..144 score: 81.17 coord: 106..127 score: 57.85 coord: 65..81 score: 48.13 coord: 51..64 score: 54.55
IPR000530	Ribosomal protein S12e	PANTHER	PTHR11843	40S RIBOSOMAL PROTEIN S12	coord: 26..160
IPR000530	Ribosomal protein S12e	PROSITE	PS01189	RIBOSOMAL_S12E	coord: 47..65
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 47..140 e-value: 3.2E-27 score: 94.1
IPR029064	50S ribosomal protein L30e-like	GENE3D	3.30.1330.30		coord: 29..161 e-value: 3.7E-54 score: 183.6
IPR029064	50S ribosomal protein L30e-like	SUPERFAMILY	55315	L30e-like	coord: 41..159
None	No IPR available	PANTHER	PTHR11843:SF20	40S RIBOSOMAL PROTEIN S12	coord: 26..160

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS025751.1	MS025751.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome