MS025747 (gene) Bitter gourd (TR) v1

Overview


Name	MS025747
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	protein LOW PSII ACCUMULATION 3, chloroplastic
Location	scaffold813: 741915 .. 746970 (-)
RNA-Seq Expression	MS025747
Synteny	MS025747

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATCATGGCGTTTCTCTCCTCACCACTGCACAGTCCCTCTCTAGTCCGAAACAAATTTCTCCTCTCTCCACTTTCTTCTTCTTCCTTCAGTGCTCTACGGCGTTGTACTCCATCCAGTTTATCTGCCGCTCAAACTTTCGCGAGTTCGAGATTTTGCTTTAGGATACACTGCACTGATAAAGAACGAGCTGCACCGGTTACTCAGCGTTCCGATCCTAAGGCCGGAGTCCCGGTTTATAAGCCCAAAACCTACGAGGTTCTCGTCTCCGATGCCGCGAATTCTCTTGCCTATGCTCTGGAAGATGGAAAGATCCGCGTGGAGATTGATTTTCCGTAATATCTCGCTTTCTATATGAATATTGATGGTTTTTTTAAACTCTTGCATTGTGGCGTTTGGTTGGGATGGAGCTGAGAGGAAAATATTGTGGGATTTGAAGTGACAAAATTATTGATTTTCAGCACTATCTTGCTCTTTCTTGTGAGAGATACCACTCATTCCGACAATCTTTTACTTAGCATTAGGGTTACTACTACCATGCAGTACGTTTGTCTTCGTTTCTTTCAATCCCCCCGCCCCGAGTATTGCTAATCGGTGCATTTGGTAAAGTAATCTGGTGGATTCTATTTTGGGGTTTTCTTTTCGCAGAGAAATTGAATGTGGTAATTAAGATTCTTAGCGTAGTCTGTAAAAGTTAATTGGTTTTTAATGTCTTTGAAGCTTACAAGAAAGTAACAATATCCTTCGCTCTAGCGTCGAAACGTAGTTTATTCTGGAATGTAAGGTTCAAATTTCTGTGTGTAAATTTTAGTTTGAGAATTTATTAGTCATTTGAGTGGATTTTTCATTATTTTCTAACCCTTGTTTTATTATTTCGTTTTTTTTTTGTCTGGTGGGGTTTCCTACATTCATCAGTCCCCTGCCTAGCAACATTTCCTCGTATAAGGTATCTGTCTCCTACATGTTTTTAATGAAATTCGTTGCTCATAACGTTACCTTTTCTTTCTTTCATTTATGAAAATATTCTCCATCTAGGCATTTTTTGCTTACATATATAAACGACCTCAACGTGTTGCAGATCATCATTTGAACCATGTAGTTTAGATTTTTGCATATTATGTATTGTTGATACCGCATTCTTTTTTGTGTTGAGGATATTTATACATACGTAAAGGGATCCTTAGATGATTTCATTGATGCAAATAATCAGCTTGCAACGAACCTCAAAGAAAAGAAGGGAAACCAGATCAGATTGCATATTTACTTATTTAGTAGCTAATCGTGAATGTAACAACCTAGCAGCTCATACTGTCTGTTGTTGTTGACCTGAATTCATGAACTCAGTCAACATAGGGCCATTTTATAATGTGCCCAAAGAATTTATGTTTGCATATTTCTCGTGTGAGCAAGTTGTGAACATAAAATATAATATTCCTTGCTGCGAAAACTGCTGAAATGAATTTTGGGAGTAAAAGGTTACCATTAAATGAAATGCTCACCTGAGATTTGACAGTTGATGTGTTGGTGGTTACATTCCAAGCCATGTTAGTTTAGGTTCTTTTCTATATTCTGGATTGTTGATAGCACATGTTCATTTGATTTGAGGATATTTCTAAATATGTCAAGGGATCTTCAGATGAGTTCATCGATGCCAATATTCAACTTGCCCTGGCTGTTGCAAGGAATCTTCAAGAAAATAGAGGAACTAGATCTTGCATTGTAAGCAATTATATAAATTTGTATTACCAGCAAACCTCTTCTCAAGTATGTGCAGCCGTTAAAATCTCGTGTGATGACATTAGGTGTTTCCAGATAAGCCAGAGAAGCGTAGAGCTTCACAGCTATTCAAAACAGCTCTTGACTCGGTAACAAGTTAACTCTTATAAACTTGTATTTATTTTTTGTCTAATGCAGATTACAACTGCTTGACTTTTTTTTGCTAAGAAGCAAAACATTTCGTTAACAATAGAAGAGTACCAAAAGTGAGGGAAGATGAAAACCAAGTGAAGATATTATAATTTATAGCGATGGTTGGCAATTATGAAGTAGGAGAAATAATTATGGAGGTCTGGAGGATTTGGAAATAGCACTCCAAGAAGAGGGACATCACAAGATCTGCAAAAAAACCTATCTACTCCATAAAAAATTCTTCTATTTGTCTCAAGTCAAACCTTCCAAAAGACAGTGAAAAAAGCATCCATCCCAAAGCCACAACTGCTTCATTTAAGGGCTTTTTTATTTGTTCACACCATTATGGGGCCCTTTATTAGTTTGTGGCTTCGGCCATAAAGAAAAGGCAGGCAAAAGTCTAATGTTTCAGCTTAGATATTACGAGAAACATTTAGTGAATAAAGGCGAGCAGTGCTGAATACTATCAGAGGTACTTAGATCAGGTCATGAATTCAAAATTGATGCCACTTACTTTGGATGTTCTAGCTACCAAATATTTTATAGATCGGTAGTATATTTTAGATATAAATAAATAAATTTGTGATATCTGATGATGCACCATTATTACTGGTAATAAATGATGTGGTTAATCAATAGCATGCTTATCCAGACAATTTAAATCTTGGTCTCCATTTTATGTGCTCATTTGATATTATTTTTCCCTTCTATCGTTCAGATTGATGGAATAACTGTAAGTTCCCTGGATGATGTGCCTGCTGGACCTGTCACATCCTTCTTTAGATCTGTTAGAAACACCCTTGATTTTGATTTTGAAGATGAGAATGCAGGTTGGTTATATACACATGGGTCTAACAGATCCCTTGATTTTGATCTGTTAGAAACATTCTTGTCTTCTCTCTCTTTTTTATTTTTTATTTTGTGCGTGTCATGGCCGTATATTTCGCTACTAAATGCATTGTGCAAATATATGACATATCTTAATGACCCGAACCATTACGGCAAGACTGCAATTTACATTCATAGACAGTAATAAACTTGATGCAGAAAAGTGAAATGACAGGAAAAAGAAGAAAGAGTCAAAGGGAAAGAAAAGGACTAGAAAAGAAAAGAGTGATTAACTTGATTTAATCATTATATGAGGAAACTGTTTAGAAACTTAAAGGACCTGCCTCTTCCTATGTATTCCACTTCACTTTTGTGGATATAAACTTGTTTTTTCTTCTTCAATCATATGTTTTTTTCCTTCAGTCCTATGTTATATGTTATATTGTTATCTTTTATTTCATTACCTGCTTCTTTCTAAGATTACCATTATCATTTAATGATTTCTCACTCTTTACAATCCATCTGAATCGCAGGTCGTTGGACATCTACTGACCCTCCATCACTGTACATATTTATTAATTGTAGCACGCGTGAACTTGCTTTGATAGAGAAGTATGTGGTATGATTCAGCTATCTACTGAATACTGATATTGTGGAGGACAGAACTGTTTGTGCCATCATGCCATTCTTCATGGTGGCATCGATGGTTATATAATACCTTTTGTCTTTCTTTCTGAGCAACTTGCATATTGGGGTGTGGAAGTACTAATTAAGATCTATTCATGACTTTCTAAGTGGCATTTCCACACACAATACGTTATGTTTTAAATTTAATTTCACGTGGCTTATTGCAATTGGTTTCTGTCTTTACACCATTAGGTGACTCATTTTGGGATGTGCAGGAAACTTTTGCTTCGTCAACACCCACCCTGCTGTTTAATCTAGAACTTGAAACCTTGCGGTAATGGTCCTCCTTCTCATCCATTATTGATAGATATTGGGTTCATATTTGCAACTACTGATCAGAAGTTTCAAAATTCACAGTGCAGACTTGGGCTTACTGGGATTCCCTCCCAAAGATTTGCACTATCGATTCCTCTCTCAGTTCATCCCAGTGTTCTATATTCGAATCAGAGAGTACTCTAAGGTTTTGGATCTCATCTTGGTATCCTTGTTTAATTGTATTCTTATATTTGTTGACTAAATTCTCTACTCTTTGTTCTCTTTGGGGGGAGGGGTACCAAGACAGTAGCAATAGCACCTTATATCGTTAATTACAGTGGAGCACTGTTTCGTCTATACCCTGGTGCGTATACTATTTTATCGAACTGCCTGTTAGAGAATTTTGTTCTTTGGTTTTCTCGATGTCTTTATCGGTCCTAAATCAGTTCACTGCACACTTAAGTTTTAGTAGCTAATCTTTTACACTCTGGATTTTCACATAAATCTGTTCTCATGGATATGGATTATGGAACATGTGATCTTTATATCTCTATATCTTTTCATCCTTCATAATAGGGCCTTGGCAAGTGATGCTAAAACAAGCAGATAATTCTTATGCTTGCATTGCAGAGAGTGAGACAAGGTTCACCCTTGGTGAAGTATGTATAGAAACAGCAGTACTTTTAGTTTTAGCTATTAACCATTTGTCTGATGTTTTTGGACTAACTGTTGCTTGTTATTTAGACAAAAGATGAGCTATTAAGGGTCCTTGGACTACAGGAGGAACAAGGAAGCTCATTAGAATTTCTCCGCAGAGGCTACAAGGTTTCCTTTCGATATTTGTCTTATACCTATATGGTGTTAACTTATTGCTAATGTTAATCTTCATGCACATTTGATGCCCATTTTGTTTTTTTATTTATGTTTTTGAAAATTAAGCTTATAAATACTACTATCACCTCTGAGTTTCTTTGGTTCGTTATCTACCATTTTTTAATATTTTTGTAATCTAAGCCAAAGTTTGAAAACTAACAAAAATAGCTTTTAAAAACGTTTTGAAATTTGGCTTAGAACTCAAATGTGTTTAAGTTGTGAGGAAGCAAACATAACTTTTAAAAACAGAAAACTAAGAACGAAATTATTATCAAACCAATGGAGCTAACCTACCAGCAGTTTAAGGAGAAATCTGCACATCCTATTTTGCTGTCTATGTTTTTGATTCAGTTATATGTGCATTCTTTTAGTAAAATAATCCTTAAACTGTGGCAGGCTTTGTTGGAGATAGTTTTGTAACTCATGATATCTCCTTTTGCAGGCTGCCACTTGGTGGGAAGAAGATGTTGACTCTGAACTATCTTCGGCATGGCGTAGTTGA

mRNA sequence

ATGGCGATCATGGCGTTTCTCTCCTCACCACTGCACAGTCCCTCTCTAGTCCGAAACAAATTTCTCCTCTCTCCACTTTCTTCTTCTTCCTTCAGTGCTCTACGGCGTTGTACTCCATCCAGTTTATCTGCCGCTCAAACTTTCGCGAGTTCGAGATTTTGCTTTAGGATACACTGCACTGATAAAGAACGAGCTGCACCGGTTACTCAGCGTTCCGATCCTAAGGCCGGAGTCCCGGTTTATAAGCCCAAAACCTACGAGGTTCTCGTCTCCGATGCCGCGAATTCTCTTGCCTATGCTCTGGAAGATGGAAAGATCCGCGTGGAGATTGATTTTCCCACTATCTTGCTCTTTCTTGTGAGAGATACCACTCATTCCGACAATCTTTTACTTAGCATTAGGGGATCTTCAGATGAGTTCATCGATGCCAATATTCAACTTGCCCTGGCTGTTGCAAGGAATCTTCAAGAAAATAGAGGAACTAGATCTTGCATTGTGTTTCCAGATAAGCCAGAGAAGCGTAGAGCTTCACAGCTATTCAAAACAGCTCTTGACTCGATTGATGGAATAACTGTAAGTTCCCTGGATGATGTGCCTGCTGGACCTGTCACATCCTTCTTTAGATCTGTTAGAAACACCCTTGATTTTGATTTTGAAGATGAGAATGCAGGTGACTCATTTTGGGATGTGCAGGAAACTTTTGCTTCGTCAACACCCACCCTGCTGTTTAATCTAGAACTTGAAACCTTGCGTGCAGACTTGGGCTTACTGGGATTCCCTCCCAAAGATTTGCACTATCGATTCCTCTCTCAGTTCATCCCAGTGTTCTATATTCGAATCAGAGAGTACTCTAAGTGGAGCACTGTTTCGTCTATACCCTGGTGCGTATACTATTTTATCGAACTGCCTGTTAGAGAATTTTGTTCTTTGGTTTTCTCGATGTCTTTATCGGTCCTAAATCAGTTCACTGCACACTTAAGGCCTTGGCAAGTGATGCTAAAACAAGCAGATAATTCTTATGCTTGCATTGCAGAGAGTGAGACAAGGTTCACCCTTGGTGAAACAAAAGATGAGCTATTAAGGGTCCTTGGACTACAGGAGGAACAAGGAAGCTCATTAGAATTTCTCCGCAGAGGCTACAAGGCTGCCACTTGGTGGGAAGAAGATGTTGACTCTGAACTATCTTCGGCATGGCGTAGTTGA

Coding sequence (CDS)

ATGGCGATCATGGCGTTTCTCTCCTCACCACTGCACAGTCCCTCTCTAGTCCGAAACAAATTTCTCCTCTCTCCACTTTCTTCTTCTTCCTTCAGTGCTCTACGGCGTTGTACTCCATCCAGTTTATCTGCCGCTCAAACTTTCGCGAGTTCGAGATTTTGCTTTAGGATACACTGCACTGATAAAGAACGAGCTGCACCGGTTACTCAGCGTTCCGATCCTAAGGCCGGAGTCCCGGTTTATAAGCCCAAAACCTACGAGGTTCTCGTCTCCGATGCCGCGAATTCTCTTGCCTATGCTCTGGAAGATGGAAAGATCCGCGTGGAGATTGATTTTCCCACTATCTTGCTCTTTCTTGTGAGAGATACCACTCATTCCGACAATCTTTTACTTAGCATTAGGGGATCTTCAGATGAGTTCATCGATGCCAATATTCAACTTGCCCTGGCTGTTGCAAGGAATCTTCAAGAAAATAGAGGAACTAGATCTTGCATTGTGTTTCCAGATAAGCCAGAGAAGCGTAGAGCTTCACAGCTATTCAAAACAGCTCTTGACTCGATTGATGGAATAACTGTAAGTTCCCTGGATGATGTGCCTGCTGGACCTGTCACATCCTTCTTTAGATCTGTTAGAAACACCCTTGATTTTGATTTTGAAGATGAGAATGCAGGTGACTCATTTTGGGATGTGCAGGAAACTTTTGCTTCGTCAACACCCACCCTGCTGTTTAATCTAGAACTTGAAACCTTGCGTGCAGACTTGGGCTTACTGGGATTCCCTCCCAAAGATTTGCACTATCGATTCCTCTCTCAGTTCATCCCAGTGTTCTATATTCGAATCAGAGAGTACTCTAAGTGGAGCACTGTTTCGTCTATACCCTGGTGCGTATACTATTTTATCGAACTGCCTGTTAGAGAATTTTGTTCTTTGGTTTTCTCGATGTCTTTATCGGTCCTAAATCAGTTCACTGCACACTTAAGGCCTTGGCAAGTGATGCTAAAACAAGCAGATAATTCTTATGCTTGCATTGCAGAGAGTGAGACAAGGTTCACCCTTGGTGAAACAAAAGATGAGCTATTAAGGGTCCTTGGACTACAGGAGGAACAAGGAAGCTCATTAGAATTTCTCCGCAGAGGCTACAAGGCTGCCACTTGGTGGGAAGAAGATGTTGACTCTGAACTATCTTCGGCATGGCGTAGTTGA

Protein sequence

MAIMAFLSSPLHSPSLVRNKFLLSPLSSSSFSALRRCTPSSLSAAQTFASSRFCFRIHCTDKERAAPVTQRSDPKAGVPVYKPKTYEVLVSDAANSLAYALEDGKIRVEIDFPTILLFLVRDTTHSDNLLLSIRGSSDEFIDANIQLALAVARNLQENRGTRSCIVFPDKPEKRRASQLFKTALDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENAGDSFWDVQETFASSTPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKWSTVSSIPWCVYYFIELPVREFCSLVFSMSLSVLNQFTAHLRPWQVMLKQADNSYACIAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSELSSAWRS

Homology

[Close]

BLAST of MS025747 vs. NCBI nr
Match: XP_022149990.1 (protein LOW PSII ACCUMULATION 3, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 612.1 bits (1577), Expect = 3.5e-171
Identity = 337/421 (80.05%), Postives = 347/421 (82.42%), Query Frame = 0


Query: 1   MAIMAFLSSPLHSPSLVRNKFLLSPLSSSSFSALRRCTPSSLSAAQTFASSRFCFRIHCT 60
           MAIMAFLSSPLHSPSL+RNKFLLSPLSSSSFSALRRCTPSSLSAAQTFASSRFCFRIHCT
Sbjct: 1   MAIMAFLSSPLHSPSLIRNKFLLSPLSSSSFSALRRCTPSSLSAAQTFASSRFCFRIHCT 60

Query: 61  DKERAAPVTQRSDPKAGVPVYKPKTYEVLVSDAANSLAYALEDGKIRVEIDFPTILLFLV 120
           DKERAAPVTQRSDPKAGVPVYKPKTYEVLVSDAANSLAYALEDGKIRVEIDFP +     
Sbjct: 61  DKERAAPVTQRSDPKAGVPVYKPKTYEVLVSDAANSLAYALEDGKIRVEIDFPPL----- 120

Query: 121 RDTTHSDNLLLSIRGSSDEFIDANIQLALAVARNLQENRGTRSCIVFPDKPEKRRASQLF 180
                  + + S +GSSDEFIDANIQLALAVARNLQENRGTRSCIVFPDKPEKRRASQLF
Sbjct: 121 ------PSNISSYKGSSDEFIDANIQLALAVARNLQENRGTRSCIVFPDKPEKRRASQLF 180

Query: 181 KTALDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENAG-------DSFW----- 240
           KTALDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENAG        S +     
Sbjct: 181 KTALDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENAGRWTSTDPPSLYIFINC 240

Query: 241 ---------DVQETFASSTPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIR 300
                       ETFASSTPTLLFNLELETLRADLGLLGFPPKDLH+RFLSQFIPVFYIR
Sbjct: 241 STRELALIEKYVETFASSTPTLLFNLELETLRADLGLLGFPPKDLHHRFLSQFIPVFYIR 300

Query: 301 IREYSKWSTVSSIPWCVYYFIELPVREFCSLVFSMSLSVLNQFTAHLRPWQVMLKQADNS 360
           IREYSK  TV+  P+ V Y   L                   F  +  PWQVMLKQADNS
Sbjct: 301 IREYSK--TVAIAPYIVNYSGAL-------------------FRLYPGPWQVMLKQADNS 360

Query: 361 YACIAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSELSSAWR 401
           YACIAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSELSSAWR
Sbjct: 361 YACIAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSELSSAWR 389

[Close]

BLAST of MS025747 vs. NCBI nr
Match: KAG6575630.1 (Protein LOW PSII ACCUMULATION 3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 552.0 bits (1421), Expect = 4.3e-153
Identity = 309/426 (72.54%), Postives = 329/426 (77.23%), Query Frame = 0


Query: 1   MAIMAFLSSPLHSPSLVR---NKFLLSPLSSSSFSALRRCTPSSLSAAQTFASSRFCFRI 60
           MAIMAFLSSP H PSLVR   + FL SP+ SSSFSALRR T SSL  AQT A+S FCFRI
Sbjct: 1   MAIMAFLSSPPHIPSLVRPCHSNFLFSPI-SSSFSALRRSTRSSLFGAQTLATSGFCFRI 60

Query: 61  HCTDKERAAPVTQRSDPKAGVPVYKPKTYEVLVSDAANSLAYALEDGKIRVEIDFPTILL 120
           HC+DKERAAPVT+ SDPKAGVP+YKPKTYEVLVSDAANSLAYALEDGK+R+EIDFP +  
Sbjct: 61  HCSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPL-- 120

Query: 121 FLVRDTTHSDNLLLSIRGSSDEFIDANIQLALAVARNLQENRGTRSCIVFPDKPEKRRAS 180
                     + + S +GSSDEFIDANIQLALAVARNLQE RGTRSCIVFPDKP+K RAS
Sbjct: 121 ---------PSNISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRAS 180

Query: 181 QLFKTALDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENAGDSFWDVQ------ 240
           QLFKTALDSIDGIT+SSLDDVPAGPVTSFFRS+RNTLDFDFEDENAG   W         
Sbjct: 181 QLFKTALDSIDGITISSLDDVPAGPVTSFFRSIRNTLDFDFEDENAGR--WTSSEPPSLY 240

Query: 241 -----------------ETFASSTPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIP 300
                            ETFASS PTL+FNLELETLRADLGLLGFPPKDLHYRFLSQFIP
Sbjct: 241 IFINCSTRELAMIEKYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIP 300

Query: 301 VFYIRIREYSKWSTVSSIPWCVYYFIELPVREFCSLVFSMSLSVLNQFTAHLRPWQVMLK 360
           VFYIRIREYSK  TV   P+ V Y   L                   F  +  PWQVMLK
Sbjct: 301 VFYIRIREYSK--TVPIAPYIVNYSGAL-------------------FRQYPGPWQVMLK 360

Query: 361 QADNSYACIAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSEL 401
           QADNSYAC+AESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEED DSE+
Sbjct: 361 QADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDNDSEV 391

[Close]

BLAST of MS025747 vs. NCBI nr
Match: XP_022954402.1 (protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita moschata])

HSP 1 Score: 550.8 bits (1418), Expect = 9.5e-153
Identity = 308/426 (72.30%), Postives = 329/426 (77.23%), Query Frame = 0


Query: 1   MAIMAFLSSPLHSPSLVR---NKFLLSPLSSSSFSALRRCTPSSLSAAQTFASSRFCFRI 60
           MAIMAFLSSP H PSLVR   + FL SP+ +SSFSALRR T SSL  AQT A+S FCFRI
Sbjct: 1   MAIMAFLSSPPHIPSLVRPFHSNFLFSPI-ASSFSALRRSTRSSLFGAQTLATSGFCFRI 60

Query: 61  HCTDKERAAPVTQRSDPKAGVPVYKPKTYEVLVSDAANSLAYALEDGKIRVEIDFPTILL 120
           HC+DKERAAPVT+ SDPKAGVP+YKPKTYEVLVSDAANSLAYALEDGK+R+EIDFP +  
Sbjct: 61  HCSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPL-- 120

Query: 121 FLVRDTTHSDNLLLSIRGSSDEFIDANIQLALAVARNLQENRGTRSCIVFPDKPEKRRAS 180
                     + + S +GSSDEFIDANIQLALAVARNLQE RGTRSCIVFPDKP+K RAS
Sbjct: 121 ---------PSNISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRAS 180

Query: 181 QLFKTALDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENAGDSFWDVQ------ 240
           QLFKTALDSIDGIT+SSLDDVPAGPVTSFFRS+RNTLDFDFEDENAG   W         
Sbjct: 181 QLFKTALDSIDGITISSLDDVPAGPVTSFFRSIRNTLDFDFEDENAGR--WTSSEPPSLY 240

Query: 241 -----------------ETFASSTPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIP 300
                            ETFASS PTL+FNLELETLRADLGLLGFPPKDLHYRFLSQFIP
Sbjct: 241 IFINCSTRELAMIEKYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIP 300

Query: 301 VFYIRIREYSKWSTVSSIPWCVYYFIELPVREFCSLVFSMSLSVLNQFTAHLRPWQVMLK 360
           VFYIRIREYSK  TV   P+ V Y   L                   F  +  PWQVMLK
Sbjct: 301 VFYIRIREYSK--TVPIAPYIVNYSGAL-------------------FRQYPGPWQVMLK 360

Query: 361 QADNSYACIAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSEL 401
           QADNSYAC+AESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEED DSE+
Sbjct: 361 QADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDNDSEV 391

[Close]

BLAST of MS025747 vs. NCBI nr
Match: XP_022992481.1 (protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita maxima])

HSP 1 Score: 550.1 bits (1416), Expect = 1.6e-152
Identity = 307/426 (72.07%), Postives = 328/426 (77.00%), Query Frame = 0


Query: 1   MAIMAFLSSPLHSPSLVR---NKFLLSPLSSSSFSALRRCTPSSLSAAQTFASSRFCFRI 60
           MAIMAFLSSP H PSLVR   + FL SP+ SSSFSALRR T SSL  AQT A+S FCFRI
Sbjct: 1   MAIMAFLSSPPHIPSLVRPFHSNFLFSPI-SSSFSALRRSTRSSLFGAQTLATSGFCFRI 60

Query: 61  HCTDKERAAPVTQRSDPKAGVPVYKPKTYEVLVSDAANSLAYALEDGKIRVEIDFPTILL 120
           HC+DKERAAPVT+ SDPKAGVP+YKPKTYEVLVSDAANSLAYALEDGK+R+EIDFP +  
Sbjct: 61  HCSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPL-- 120

Query: 121 FLVRDTTHSDNLLLSIRGSSDEFIDANIQLALAVARNLQENRGTRSCIVFPDKPEKRRAS 180
                     + + S +GSSDEFIDANIQLALAVARNLQE RGTRSCIVFPDKP+K RAS
Sbjct: 121 ---------PSNISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRAS 180

Query: 181 QLFKTALDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENAGDSFWDVQ------ 240
           QLFKTALDSIDGIT+SSLDD+PAGPVTSFFRS+RNTLDFDFEDENAG   W         
Sbjct: 181 QLFKTALDSIDGITISSLDDIPAGPVTSFFRSIRNTLDFDFEDENAGR--WTSSEPPSLY 240

Query: 241 -----------------ETFASSTPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIP 300
                            ETFASS PTL+FNLELETLRADLGLLGFPPKDLHYRFLSQFIP
Sbjct: 241 IFINCSTRELAMIEKYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIP 300

Query: 301 VFYIRIREYSKWSTVSSIPWCVYYFIELPVREFCSLVFSMSLSVLNQFTAHLRPWQVMLK 360
           VFYIRIREYSK  TV   P+ V Y   L                   F  +  PWQVMLK
Sbjct: 301 VFYIRIREYSK--TVPIAPYIVNYSGAL-------------------FRQYPGPWQVMLK 360

Query: 361 QADNSYACIAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSEL 401
           Q DNSYAC+AESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEED DSE+
Sbjct: 361 QTDNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDNDSEV 391

[Close]

BLAST of MS025747 vs. NCBI nr
Match: XP_038900014.1 (protein LOW PSII ACCUMULATION 3, chloroplastic [Benincasa hispida])

HSP 1 Score: 549.3 bits (1414), Expect = 2.8e-152
Identity = 309/426 (72.54%), Postives = 327/426 (76.76%), Query Frame = 0


Query: 1   MAIMAFLSSPLHSPSLVR---NKFLLSPLSSSSFSALRRCTPSSLSAAQTFASSRFCFRI 60
           MAIMAF+SSP   PSL R   + FL SP+ SSSF ALRR T SSL  AQT A+S FCFRI
Sbjct: 1   MAIMAFVSSPPQIPSLSRSFHSNFLFSPI-SSSFCALRRSTRSSLFGAQTLATSGFCFRI 60

Query: 61  HCTDKERAAPVTQRSDPKAGVPVYKPKTYEVLVSDAANSLAYALEDGKIRVEIDFPTILL 120
           HC DKER +PVTQ SDPKAGVP+YKPKTYEVLVSDAANSLAYALEDGKIR+EIDFP +  
Sbjct: 61  HCRDKERTSPVTQSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKIRLEIDFPPL-- 120

Query: 121 FLVRDTTHSDNLLLSIRGSSDEFIDANIQLALAVARNLQENRGTRSCIVFPDKPEKRRAS 180
                     + + S +GSSDEFIDANIQLALAVARNLQE RGTRSCIVFPDKPEKRRAS
Sbjct: 121 ---------PSNISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPEKRRAS 180

Query: 181 QLFKTALDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENAGDSFWDVQ------ 240
           QLFKTALDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDEN+G   W         
Sbjct: 181 QLFKTALDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENSGR--WTSSDPPSLY 240

Query: 241 -----------------ETFASSTPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIP 300
                            ETFASS PTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIP
Sbjct: 241 IFINCSTRELGLIEKYVETFASSIPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIP 300

Query: 301 VFYIRIREYSKWSTVSSIPWCVYYFIELPVREFCSLVFSMSLSVLNQFTAHLRPWQVMLK 360
           VFYIRIREYSK  TV+  P+ V Y   L                   F  +  PWQVMLK
Sbjct: 301 VFYIRIREYSK--TVAVAPYIVNYSGAL-------------------FRQYPGPWQVMLK 360

Query: 361 QADNSYACIAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSEL 401
           Q+DNSYAC+AESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSE+
Sbjct: 361 QSDNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSEV 391

[Close]

BLAST of MS025747 vs. ExPASy Swiss-Prot
Match: Q8H0W0 (Protein LPA3 OS=Arabidopsis thaliana OX=3702 GN=LPA3 PE=1 SV=1)

HSP 1 Score: 399.8 bits (1026), Expect = 3.6e-110
Identity = 215/355 (60.56%), Postives = 252/355 (70.99%), Query Frame = 0


Query: 69  TQRSDPKAGVPVYKPKTYEVLVSDAANSLAYALEDGKIRVEIDFPTILLFLVRDTTHSDN 128
           +  SDP+ GVP+YKPK+YEVL +DAANSLA+AL+D K R+EIDFP +            +
Sbjct: 38  SSNSDPRRGVPLYKPKSYEVLATDAANSLAFALQDSKSRLEIDFPPL-----------PS 97

Query: 129 LLLSIRGSSDEFIDANIQLALAVARNLQENRGTRSCIVFPDKPEKRRASQLFKTALDSID 188
            + S +GSSD+FIDANIQLA+ V R LQE   TR+CIVFPDKPEKRRASQ FK A DS+D
Sbjct: 98  SISSYKGSSDDFIDANIQLAVTVVRKLQEKIETRACIVFPDKPEKRRASQRFKAAFDSVD 157

Query: 189 GITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENAGDSFWDVQ----------------- 248
           GI++ SLDD+P   VT+FFRS+R+TLDFDFEDEN G   W+ +                 
Sbjct: 158 GISIGSLDDIPGTSVTNFFRSIRSTLDFDFEDENEGT--WEPKEPPTLYIFINCSTRELS 217

Query: 249 ------ETFASSTPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSK 308
                 ETFASSTP LLFNLEL+TLRADLGLLGFPPKDLHYRFLSQFIPVFYIR REYSK
Sbjct: 218 FIEKFVETFASSTPALLFNLELDTLRADLGLLGFPPKDLHYRFLSQFIPVFYIRTREYSK 277

Query: 309 WSTVSSIPWCVYYFIELPVREFCSLVFSMSLSVLNQFTAHLRPWQVMLKQADNSYACIAE 368
             TV+  P+ + Y   L                   F  +  PWQVMLKQ D S+AC+AE
Sbjct: 278 --TVAVAPFVLNYNGAL-------------------FRQYPGPWQVMLKQTDGSFACVAE 337

Query: 369 SETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSELSSAWRS 401
           S TRFTLGETK+ELL+VLGLQEE+GSSLEFLRRGYK+ATWWEEDV+ E SS WR+
Sbjct: 338 SPTRFTLGETKEELLQVLGLQEEKGSSLEFLRRGYKSATWWEEDVELEASSNWRN 358

[Close]

BLAST of MS025747 vs. ExPASy TrEMBL
Match: A0A6J1D790 (protein LOW PSII ACCUMULATION 3, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111018272 PE=4 SV=1)

HSP 1 Score: 612.1 bits (1577), Expect = 1.7e-171
Identity = 337/421 (80.05%), Postives = 347/421 (82.42%), Query Frame = 0


Query: 1   MAIMAFLSSPLHSPSLVRNKFLLSPLSSSSFSALRRCTPSSLSAAQTFASSRFCFRIHCT 60
           MAIMAFLSSPLHSPSL+RNKFLLSPLSSSSFSALRRCTPSSLSAAQTFASSRFCFRIHCT
Sbjct: 1   MAIMAFLSSPLHSPSLIRNKFLLSPLSSSSFSALRRCTPSSLSAAQTFASSRFCFRIHCT 60

Query: 61  DKERAAPVTQRSDPKAGVPVYKPKTYEVLVSDAANSLAYALEDGKIRVEIDFPTILLFLV 120
           DKERAAPVTQRSDPKAGVPVYKPKTYEVLVSDAANSLAYALEDGKIRVEIDFP +     
Sbjct: 61  DKERAAPVTQRSDPKAGVPVYKPKTYEVLVSDAANSLAYALEDGKIRVEIDFPPL----- 120

Query: 121 RDTTHSDNLLLSIRGSSDEFIDANIQLALAVARNLQENRGTRSCIVFPDKPEKRRASQLF 180
                  + + S +GSSDEFIDANIQLALAVARNLQENRGTRSCIVFPDKPEKRRASQLF
Sbjct: 121 ------PSNISSYKGSSDEFIDANIQLALAVARNLQENRGTRSCIVFPDKPEKRRASQLF 180

Query: 181 KTALDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENAG-------DSFW----- 240
           KTALDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENAG        S +     
Sbjct: 181 KTALDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENAGRWTSTDPPSLYIFINC 240

Query: 241 ---------DVQETFASSTPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIR 300
                       ETFASSTPTLLFNLELETLRADLGLLGFPPKDLH+RFLSQFIPVFYIR
Sbjct: 241 STRELALIEKYVETFASSTPTLLFNLELETLRADLGLLGFPPKDLHHRFLSQFIPVFYIR 300

Query: 301 IREYSKWSTVSSIPWCVYYFIELPVREFCSLVFSMSLSVLNQFTAHLRPWQVMLKQADNS 360
           IREYSK  TV+  P+ V Y   L                   F  +  PWQVMLKQADNS
Sbjct: 301 IREYSK--TVAIAPYIVNYSGAL-------------------FRLYPGPWQVMLKQADNS 360

Query: 361 YACIAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSELSSAWR 401
           YACIAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSELSSAWR
Sbjct: 361 YACIAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSELSSAWR 389

[Close]

BLAST of MS025747 vs. ExPASy TrEMBL
Match: A0A6J1GQW6 (protein LOW PSII ACCUMULATION 3, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111456648 PE=4 SV=1)

HSP 1 Score: 550.8 bits (1418), Expect = 4.6e-153
Identity = 308/426 (72.30%), Postives = 329/426 (77.23%), Query Frame = 0


Query: 1   MAIMAFLSSPLHSPSLVR---NKFLLSPLSSSSFSALRRCTPSSLSAAQTFASSRFCFRI 60
           MAIMAFLSSP H PSLVR   + FL SP+ +SSFSALRR T SSL  AQT A+S FCFRI
Sbjct: 1   MAIMAFLSSPPHIPSLVRPFHSNFLFSPI-ASSFSALRRSTRSSLFGAQTLATSGFCFRI 60

Query: 61  HCTDKERAAPVTQRSDPKAGVPVYKPKTYEVLVSDAANSLAYALEDGKIRVEIDFPTILL 120
           HC+DKERAAPVT+ SDPKAGVP+YKPKTYEVLVSDAANSLAYALEDGK+R+EIDFP +  
Sbjct: 61  HCSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPL-- 120

Query: 121 FLVRDTTHSDNLLLSIRGSSDEFIDANIQLALAVARNLQENRGTRSCIVFPDKPEKRRAS 180
                     + + S +GSSDEFIDANIQLALAVARNLQE RGTRSCIVFPDKP+K RAS
Sbjct: 121 ---------PSNISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRAS 180

Query: 181 QLFKTALDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENAGDSFWDVQ------ 240
           QLFKTALDSIDGIT+SSLDDVPAGPVTSFFRS+RNTLDFDFEDENAG   W         
Sbjct: 181 QLFKTALDSIDGITISSLDDVPAGPVTSFFRSIRNTLDFDFEDENAGR--WTSSEPPSLY 240

Query: 241 -----------------ETFASSTPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIP 300
                            ETFASS PTL+FNLELETLRADLGLLGFPPKDLHYRFLSQFIP
Sbjct: 241 IFINCSTRELAMIEKYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIP 300

Query: 301 VFYIRIREYSKWSTVSSIPWCVYYFIELPVREFCSLVFSMSLSVLNQFTAHLRPWQVMLK 360
           VFYIRIREYSK  TV   P+ V Y   L                   F  +  PWQVMLK
Sbjct: 301 VFYIRIREYSK--TVPIAPYIVNYSGAL-------------------FRQYPGPWQVMLK 360

Query: 361 QADNSYACIAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSEL 401
           QADNSYAC+AESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEED DSE+
Sbjct: 361 QADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDNDSEV 391

[Close]

BLAST of MS025747 vs. ExPASy TrEMBL
Match: A0A6J1JTN7 (protein LOW PSII ACCUMULATION 3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111488800 PE=4 SV=1)

HSP 1 Score: 550.1 bits (1416), Expect = 7.9e-153
Identity = 307/426 (72.07%), Postives = 328/426 (77.00%), Query Frame = 0


Query: 1   MAIMAFLSSPLHSPSLVR---NKFLLSPLSSSSFSALRRCTPSSLSAAQTFASSRFCFRI 60
           MAIMAFLSSP H PSLVR   + FL SP+ SSSFSALRR T SSL  AQT A+S FCFRI
Sbjct: 1   MAIMAFLSSPPHIPSLVRPFHSNFLFSPI-SSSFSALRRSTRSSLFGAQTLATSGFCFRI 60

Query: 61  HCTDKERAAPVTQRSDPKAGVPVYKPKTYEVLVSDAANSLAYALEDGKIRVEIDFPTILL 120
           HC+DKERAAPVT+ SDPKAGVP+YKPKTYEVLVSDAANSLAYALEDGK+R+EIDFP +  
Sbjct: 61  HCSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPL-- 120

Query: 121 FLVRDTTHSDNLLLSIRGSSDEFIDANIQLALAVARNLQENRGTRSCIVFPDKPEKRRAS 180
                     + + S +GSSDEFIDANIQLALAVARNLQE RGTRSCIVFPDKP+K RAS
Sbjct: 121 ---------PSNISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRAS 180

Query: 181 QLFKTALDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENAGDSFWDVQ------ 240
           QLFKTALDSIDGIT+SSLDD+PAGPVTSFFRS+RNTLDFDFEDENAG   W         
Sbjct: 181 QLFKTALDSIDGITISSLDDIPAGPVTSFFRSIRNTLDFDFEDENAGR--WTSSEPPSLY 240

Query: 241 -----------------ETFASSTPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIP 300
                            ETFASS PTL+FNLELETLRADLGLLGFPPKDLHYRFLSQFIP
Sbjct: 241 IFINCSTRELAMIEKYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIP 300

Query: 301 VFYIRIREYSKWSTVSSIPWCVYYFIELPVREFCSLVFSMSLSVLNQFTAHLRPWQVMLK 360
           VFYIRIREYSK  TV   P+ V Y   L                   F  +  PWQVMLK
Sbjct: 301 VFYIRIREYSK--TVPIAPYIVNYSGAL-------------------FRQYPGPWQVMLK 360

Query: 361 QADNSYACIAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSEL 401
           Q DNSYAC+AESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEED DSE+
Sbjct: 361 QTDNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDNDSEV 391

[Close]

BLAST of MS025747 vs. ExPASy TrEMBL
Match: A0A5A7UU42 (Protein LOW PSII ACCUMULATION 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001640 PE=4 SV=1)

HSP 1 Score: 548.5 bits (1412), Expect = 2.3e-152
Identity = 307/426 (72.07%), Postives = 327/426 (76.76%), Query Frame = 0


Query: 1   MAIMAFLSSPLHSPSLVR---NKFLLSPLSSSSFSALRRCTPSSLSAAQTFASSRFCFRI 60
           M IMAFLSSP + PSL R   + FL SP+SSS    LRR TPSSL  AQT A+S FCFRI
Sbjct: 1   MPIMAFLSSPPYIPSLSRPFHSNFLFSPISSS----LRRSTPSSLFGAQTLAASGFCFRI 60

Query: 61  HCTDKERAAPVTQRSDPKAGVPVYKPKTYEVLVSDAANSLAYALEDGKIRVEIDFPTILL 120
           HC DKERAAPVTQ SDPKAGVP+YKPKTYEVLVSDAANSLAYALEDGK+R+EIDFP +  
Sbjct: 61  HCRDKERAAPVTQSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPL-- 120

Query: 121 FLVRDTTHSDNLLLSIRGSSDEFIDANIQLALAVARNLQENRGTRSCIVFPDKPEKRRAS 180
                     + + S +GSSDEFIDANIQLALAVARNLQE RGTRSCIVFPDKPEKRRAS
Sbjct: 121 ---------PSNISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPEKRRAS 180

Query: 181 QLFKTALDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENAGDSFWDVQ------ 240
           +LFKTA+DSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFED+NAG   W         
Sbjct: 181 ELFKTAIDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDDNAGR--WTSSDPPSLY 240

Query: 241 -----------------ETFASSTPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIP 300
                            ETFASS PTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIP
Sbjct: 241 IFINCSTRELGLIEKYVETFASSIPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIP 300

Query: 301 VFYIRIREYSKWSTVSSIPWCVYYFIELPVREFCSLVFSMSLSVLNQFTAHLRPWQVMLK 360
           VFYIRIREYSK  TV+  P+ V Y   L                   F  +  PWQVMLK
Sbjct: 301 VFYIRIREYSK--TVAVAPYIVNYSGAL-------------------FRQYPGPWQVMLK 360

Query: 361 QADNSYACIAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSEL 401
           Q+DNSYAC+AESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSE+
Sbjct: 361 QSDNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSEV 388

[Close]

BLAST of MS025747 vs. ExPASy TrEMBL
Match: A0A1S3CFB8 (protein LOW PSII ACCUMULATION 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499841 PE=4 SV=1)

HSP 1 Score: 547.7 bits (1410), Expect = 3.9e-152
Identity = 306/426 (71.83%), Postives = 327/426 (76.76%), Query Frame = 0


Query: 1   MAIMAFLSSPLHSPSLVR---NKFLLSPLSSSSFSALRRCTPSSLSAAQTFASSRFCFRI 60
           M IMAF+SSP + PSL R   + FL SP+SSS    LRR TPSSL  AQT A+S FCFRI
Sbjct: 1   MPIMAFISSPPYIPSLSRPFQSNFLFSPISSS----LRRSTPSSLFGAQTLAASGFCFRI 60

Query: 61  HCTDKERAAPVTQRSDPKAGVPVYKPKTYEVLVSDAANSLAYALEDGKIRVEIDFPTILL 120
           HC DKERAAPVTQ SDPKAGVP+YKPKTYEVLVSDAANSLAYALEDGK+R+EIDFP +  
Sbjct: 61  HCRDKERAAPVTQSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPL-- 120

Query: 121 FLVRDTTHSDNLLLSIRGSSDEFIDANIQLALAVARNLQENRGTRSCIVFPDKPEKRRAS 180
                     + + S +GSSDEFIDANIQLALAVARNLQE RGTRSCIVFPDKPEKRRAS
Sbjct: 121 ---------PSNISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPEKRRAS 180

Query: 181 QLFKTALDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENAGDSFWDVQ------ 240
           +LFKTA+DSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFED+NAG   W         
Sbjct: 181 ELFKTAIDSIDGITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDDNAGR--WTSSDPPSLY 240

Query: 241 -----------------ETFASSTPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIP 300
                            ETFASS PTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIP
Sbjct: 241 IFINCSTRELGLIEKYVETFASSIPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIP 300

Query: 301 VFYIRIREYSKWSTVSSIPWCVYYFIELPVREFCSLVFSMSLSVLNQFTAHLRPWQVMLK 360
           VFYIRIREYSK  TV+  P+ V Y   L                   F  +  PWQVMLK
Sbjct: 301 VFYIRIREYSK--TVAVAPYIVNYSGAL-------------------FRQYPGPWQVMLK 360

Query: 361 QADNSYACIAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSEL 401
           Q+DNSYAC+AESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSE+
Sbjct: 361 QSDNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSEV 388

[Close]

BLAST of MS025747 vs. TAIR 10
Match: AT1G73060.1 (Low PSII Accumulation 3 )

HSP 1 Score: 399.8 bits (1026), Expect = 2.5e-111
Identity = 215/355 (60.56%), Postives = 252/355 (70.99%), Query Frame = 0


Query: 69  TQRSDPKAGVPVYKPKTYEVLVSDAANSLAYALEDGKIRVEIDFPTILLFLVRDTTHSDN 128
           +  SDP+ GVP+YKPK+YEVL +DAANSLA+AL+D K R+EIDFP +            +
Sbjct: 38  SSNSDPRRGVPLYKPKSYEVLATDAANSLAFALQDSKSRLEIDFPPL-----------PS 97

Query: 129 LLLSIRGSSDEFIDANIQLALAVARNLQENRGTRSCIVFPDKPEKRRASQLFKTALDSID 188
            + S +GSSD+FIDANIQLA+ V R LQE   TR+CIVFPDKPEKRRASQ FK A DS+D
Sbjct: 98  SISSYKGSSDDFIDANIQLAVTVVRKLQEKIETRACIVFPDKPEKRRASQRFKAAFDSVD 157

Query: 189 GITVSSLDDVPAGPVTSFFRSVRNTLDFDFEDENAGDSFWDVQ----------------- 248
           GI++ SLDD+P   VT+FFRS+R+TLDFDFEDEN G   W+ +                 
Sbjct: 158 GISIGSLDDIPGTSVTNFFRSIRSTLDFDFEDENEGT--WEPKEPPTLYIFINCSTRELS 217

Query: 249 ------ETFASSTPTLLFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSK 308
                 ETFASSTP LLFNLEL+TLRADLGLLGFPPKDLHYRFLSQFIPVFYIR REYSK
Sbjct: 218 FIEKFVETFASSTPALLFNLELDTLRADLGLLGFPPKDLHYRFLSQFIPVFYIRTREYSK 277

Query: 309 WSTVSSIPWCVYYFIELPVREFCSLVFSMSLSVLNQFTAHLRPWQVMLKQADNSYACIAE 368
             TV+  P+ + Y   L                   F  +  PWQVMLKQ D S+AC+AE
Sbjct: 278 --TVAVAPFVLNYNGAL-------------------FRQYPGPWQVMLKQTDGSFACVAE 337

Query: 369 SETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDVDSELSSAWRS 401
           S TRFTLGETK+ELL+VLGLQEE+GSSLEFLRRGYK+ATWWEEDV+ E SS WR+
Sbjct: 338 SPTRFTLGETKEELLQVLGLQEEKGSSLEFLRRGYKSATWWEEDVELEASSNWRN 358

The following BLAST results are available for this feature:

BLAST of MS025747 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022149990.1	3.5e-171	80.05	protein LOW PSII ACCUMULATION 3, chloroplastic isoform X1 [Momordica charantia]	[more]
KAG6575630.1	4.3e-153	72.54	Protein LOW PSII ACCUMULATION 3, chloroplastic, partial [Cucurbita argyrosperma ...	[more]
XP_022954402.1	9.5e-153	72.30	protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita moschata]	[more]
XP_022992481.1	1.6e-152	72.07	protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita maxima]	[more]
XP_038900014.1	2.8e-152	72.54	protein LOW PSII ACCUMULATION 3, chloroplastic [Benincasa hispida]	[more]

BLAST of MS025747 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8H0W0	3.6e-110	60.56	Protein LPA3 OS=Arabidopsis thaliana OX=3702 GN=LPA3 PE=1 SV=1	[more]

BLAST of MS025747 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D790	1.7e-171	80.05	protein LOW PSII ACCUMULATION 3, chloroplastic isoform X1 OS=Momordica charantia...	[more]
A0A6J1GQW6	4.6e-153	72.30	protein LOW PSII ACCUMULATION 3, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1JTN7	7.9e-153	72.07	protein LOW PSII ACCUMULATION 3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A5A7UU42	2.3e-152	72.07	Protein LOW PSII ACCUMULATION 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3CFB8	3.9e-152	71.83	protein LOW PSII ACCUMULATION 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]

BLAST of MS025747 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G73060.1	2.5e-111	60.56	Low PSII Accumulation 3	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018962	Domain of unknown function DUF1995	PFAM	PF09353	DUF1995	coord: 83..356 e-value: 2.6E-29 score: 102.7
IPR044687	Protein LOW PSII ACCUMULATION 3	PANTHER	PTHR34051	PROTEIN LOW PSII ACCUMULATION 3, CHLOROPLASTIC	coord: 41..400
None	No IPR available	PANTHER	PTHR34051:SF2	PROTEIN LOW PSII ACCUMULATION 3, CHLOROPLASTIC	coord: 41..400

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS025747.1	MS025747.1	mRNA