MS025716 (gene) Bitter gourd (TR) v1

Overview
NameMS025716
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold220: 429595 .. 429882 (+)
RNA-Seq ExpressionMS025716
SyntenyMS025716
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACCTTTGATCTCCAAATCATTGGTTCCAATTCTCTGCACTTTTCTACTGATTTGCTGCTGCTCTCTACATCTTCACACTCCTACTCAAGCTGCAAGAAGACTCATCCCATCTCCGTGCGTTTCTCCTACATCGTCTCCGTTGTTGTCGTTGTCGTCGTCGTATCAAGTTTCTCATCTTCATCTTCCTCGCATAGCTCGAAAGCTCGGCGAAACAGCATCGTCTGCTTCCTCGAGTCTTCGTCGAATACCACGTAGCGGGCCAAATCCGACACAAAACAGGTAA

mRNA sequence

ATGAAACCTTTGATCTCCAAATCATTGGTTCCAATTCTCTGCACTTTTCTACTGATTTGCTGCTGCTCTCTACATCTTCACACTCCTACTCAAGCTGCAAGAAGACTCATCCCATCTCCGTGCGTTTCTCCTACATCGTCTCCGTTGTTGTCGTTGTCGTCGTCGTATCAAGTTTCTCATCTTCATCTTCCTCGCATAGCTCGAAAGCTCGGCGAAACAGCATCGTCTGCTTCCTCGAGTCTTCGTCGAATACCACGTAGCGGGCCAAATCCGACACAAAACAGGTAA

Coding sequence (CDS)

ATGAAACCTTTGATCTCCAAATCATTGGTTCCAATTCTCTGCACTTTTCTACTGATTTGCTGCTGCTCTCTACATCTTCACACTCCTACTCAAGCTGCAAGAAGACTCATCCCATCTCCGTGCGTTTCTCCTACATCGTCTCCGTTGTTGTCGTTGTCGTCGTCGTATCAAGTTTCTCATCTTCATCTTCCTCGCATAGCTCGAAAGCTCGGCGAAACAGCATCGTCTGCTTCCTCGAGTCTTCGTCGAATACCACGTAGCGGGCCAAATCCGACACAAAACAGGTAA

Protein sequence

MKPLISKSLVPILCTFLLICCCSLHLHTPTQAARRLIPSPCVSPTSSPLLSLSSSYQVSHLHLPRIARKLGETASSASSSLRRIPRSGPNPTQNR
Homology
BLAST of MS025716 vs. NCBI nr
Match: XP_011656590.1 (uncharacterized protein LOC105435754 [Cucumis sativus] >KAE8646645.1 hypothetical protein Csa_005020 [Cucumis sativus])

HSP 1 Score: 108.2 bits (269), Expect = 3.9e-20
Identity = 74/102 (72.55%), Postives = 79/102 (77.45%), Query Frame = 0

Query: 1   MKPLISKS-LVPILCTFLLICCCSLHLHTPTQAARRLIPSP--CVSPTSSPL---LSLSS 60
           MKPLISKS LVPIL TFLL+   S HLHTPTQAAR L+P P   V+ TS PL   LS SS
Sbjct: 41  MKPLISKSLLVPILYTFLLL-IFSFHLHTPTQAARMLLPFPGSHVASTSLPLPLSLSSSS 100

Query: 61  SYQVSHL-HLPRIARKLGETASSASSSLRRIPRSGPNPTQNR 96
           SYQV  L HLP  ARKLGET+SS S+SLRRIPRSGPNPTQNR
Sbjct: 101 SYQVDLLHHLPPAARKLGETSSSTSTSLRRIPRSGPNPTQNR 141

BLAST of MS025716 vs. NCBI nr
Match: KAA0031696.1 (uncharacterized protein E6C27_scaffold139G004800 [Cucumis melo var. makuwa])

HSP 1 Score: 105.5 bits (262), Expect = 2.5e-19
Identity = 73/101 (72.28%), Postives = 77/101 (76.24%), Query Frame = 0

Query: 1   MKPLISKS-LVPILCTFLLICCCSLHLHTPTQAARRLIPSP--CVSPTSSPL-LSLSSSY 60
           MKPLISKS LVPIL TFLL+   S HLHTPTQAAR L P P   V+ TS PL LS S SY
Sbjct: 1   MKPLISKSLLVPILHTFLLL-IFSFHLHTPTQAARMLFPFPGSHVAFTSLPLSLSSSPSY 60

Query: 61  QVSHL--HLPRIARKLGETASSASSSLRRIPRSGPNPTQNR 96
           QV  L  HLP  ARKLGET+SS S+SLRRIPRSGPNPTQNR
Sbjct: 61  QVDFLLHHLPSAARKLGETSSSTSTSLRRIPRSGPNPTQNR 100

BLAST of MS025716 vs. NCBI nr
Match: TYK04416.1 (uncharacterized protein E5676_scaffold409G00120 [Cucumis melo var. makuwa])

HSP 1 Score: 105.5 bits (262), Expect = 2.5e-19
Identity = 73/101 (72.28%), Postives = 77/101 (76.24%), Query Frame = 0

Query: 1   MKPLISKS-LVPILCTFLLICCCSLHLHTPTQAARRLIPSP--CVSPTSSPL-LSLSSSY 60
           MKPLISKS LVPIL TFLL+   S HLHTPTQAAR L P P   V+ TS PL LS S SY
Sbjct: 1   MKPLISKSLLVPILHTFLLL-IFSFHLHTPTQAARMLFPFPGSHVAFTSLPLSLSSSPSY 60

Query: 61  QVSHL--HLPRIARKLGETASSASSSLRRIPRSGPNPTQNR 96
           QV  L  HLP  ARKLGET+SS S+SLRRIPRSGPNPTQNR
Sbjct: 61  QVDFLLHHLPSAARKLGETSSSTSTSLRRIPRSGPNPTQNR 100

BLAST of MS025716 vs. NCBI nr
Match: KAG7016372.1 (hypothetical protein SDJN02_21480, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 102.1 bits (253), Expect = 2.8e-18
Identity = 67/96 (69.79%), Postives = 71/96 (73.96%), Query Frame = 0

Query: 1  MKPLISKSLVPILCTFLLICCCSLHLHTPTQAARRLIPSPCVSPTSSPLLSLSSSYQVSH 60
          MKPLI KSLVPILC+FLL+      L TPTQAAR L+P P V+ TSS     SS YQV  
Sbjct: 1  MKPLICKSLVPILCSFLLMS----FLPTPTQAARLLLPVPRVASTSS-----SSLYQVDV 60

Query: 61 LH-LPRIARKLGETASSASSSLRRIPRSGPNPTQNR 96
          LH LP  ARKL ETASS SSSLRRIPRSGPNPTQNR
Sbjct: 61 LHLLPLTARKLHETASSTSSSLRRIPRSGPNPTQNR 87

BLAST of MS025716 vs. NCBI nr
Match: KAG7032911.1 (hypothetical protein SDJN02_06961 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 90.5 bits (223), Expect = 8.4e-15
Identity = 57/95 (60.00%), Postives = 64/95 (67.37%), Query Frame = 0

Query: 1  MKPLISKSLVPILCTFLLICCCSLHLHTPTQAARRLIPSPCVSPTSSPLLSLSSSYQVSH 60
          MKPLI KSL+PIL TFLL+    LHLHT   AAR L+P              SSS +V H
Sbjct: 1  MKPLICKSLLPILYTFLLM--FPLHLHTAALAARTLLP--------------SSSSRVGH 60

Query: 61 LHLPRIARKLGETASSASSSLRRIPRSGPNPTQNR 96
          LHLP   RKL ETASS SSSLR+IP+SGPNPTQN+
Sbjct: 61 LHLPLTVRKLPETASSTSSSLRQIPKSGPNPTQNK 79

BLAST of MS025716 vs. ExPASy TrEMBL
Match: A0A5D3C1X0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00120 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.2e-19
Identity = 73/101 (72.28%), Postives = 77/101 (76.24%), Query Frame = 0

Query: 1   MKPLISKS-LVPILCTFLLICCCSLHLHTPTQAARRLIPSP--CVSPTSSPL-LSLSSSY 60
           MKPLISKS LVPIL TFLL+   S HLHTPTQAAR L P P   V+ TS PL LS S SY
Sbjct: 1   MKPLISKSLLVPILHTFLLL-IFSFHLHTPTQAARMLFPFPGSHVAFTSLPLSLSSSPSY 60

Query: 61  QVSHL--HLPRIARKLGETASSASSSLRRIPRSGPNPTQNR 96
           QV  L  HLP  ARKLGET+SS S+SLRRIPRSGPNPTQNR
Sbjct: 61  QVDFLLHHLPSAARKLGETSSSTSTSLRRIPRSGPNPTQNR 100

BLAST of MS025716 vs. ExPASy TrEMBL
Match: A0A5A7SNV6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G004800 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.2e-19
Identity = 73/101 (72.28%), Postives = 77/101 (76.24%), Query Frame = 0

Query: 1   MKPLISKS-LVPILCTFLLICCCSLHLHTPTQAARRLIPSP--CVSPTSSPL-LSLSSSY 60
           MKPLISKS LVPIL TFLL+   S HLHTPTQAAR L P P   V+ TS PL LS S SY
Sbjct: 1   MKPLISKSLLVPILHTFLLL-IFSFHLHTPTQAARMLFPFPGSHVAFTSLPLSLSSSPSY 60

Query: 61  QVSHL--HLPRIARKLGETASSASSSLRRIPRSGPNPTQNR 96
           QV  L  HLP  ARKLGET+SS S+SLRRIPRSGPNPTQNR
Sbjct: 61  QVDFLLHHLPSAARKLGETSSSTSTSLRRIPRSGPNPTQNR 100

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_011656590.13.9e-2072.55uncharacterized protein LOC105435754 [Cucumis sativus] >KAE8646645.1 hypothetica... [more]
KAA0031696.12.5e-1972.28uncharacterized protein E6C27_scaffold139G004800 [Cucumis melo var. makuwa][more]
TYK04416.12.5e-1972.28uncharacterized protein E5676_scaffold409G00120 [Cucumis melo var. makuwa][more]
KAG7016372.12.8e-1869.79hypothetical protein SDJN02_21480, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG7032911.18.4e-1560.00hypothetical protein SDJN02_06961 [Cucurbita argyrosperma subsp. argyrosperma][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3C1X01.2e-1972.28Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SNV61.2e-1972.28Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 72..95

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS025716.1MS025716.1mRNA