MS025657 (gene) Bitter gourd (TR) v1

Overview
NameMS025657
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase
Locationscaffold490: 295610 .. 299287 (+)
RNA-Seq ExpressionMS025657
SyntenyMS025657
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGACGTTTGGCGGGTGCATCAAAATATGCGTTTTGAACTGGTCCGGGATAATGTCTATATGATTCAGTTTCGTTCGCTTTTGGAGAAGAATCTGATTTTGAATTCGGGCCCTTTCACGTTCGACAATGCTTTATTAGTGCTAGTTTCTCCGACCGCAGAGGATCGGCCGATACCGTGGCGTTTACTCACTGCTCTTTCTGGGTTCAGGTGTATAATGTTCCGGTTAATTGTCTGACCCGAGATGTTGCTTTACTGATAGGTAGTGCTGTTGGTCTGGTAGAGGATGTGTCTCCGATACCTTTTGTTGGATTGGGCTGTTCTTACGTATTTGTGTTCGTATTGATCTTCAGCGACCTTTAAGGTGGGAGGGTGAAATTATATCCTTCTAGTGGTGTATGGAGGTGTAGTGTTGGATTCAATACGAGAGGCTACCAGATTTTTGTTACTGTTGTGATCGGCTTGGCCATTCGATTAAAGGATGTGTGATCAGTCTCTTCTGGCCGGTTCTTCTTCGTTTCAATATGGAGATTGGTTGCGAGCGAATCCTCCCAATCGAAAATCTACTTCTGTTAGGCCTTTTGGGTTACGTGCAGATCGACAGGTGGTCCCTCGGGATGGTCGGCGTTCTACTCGAATTTTGGATCCGCCTTGGGTAGCGGCGACAGACCACCGACTTCTCTAATCGGGTCGGGTACGCCGGTAATTTCTGGTGCTGGGGCGTTCAGAAGAAGAATGTAGAGATTTTGGGTGCTTTGGTGGCGCATTCGCAGGTTCCCACATCAAATACCTTTTTGCCACGTGTTCATACTATGCAGGTACCATTGGGCTCTAATTCTTGTTCTCTCCCTTTGGGCCCATCTCTTGTAGCTGCTGATATTTGGCCGCCTAGTGTCAATCCAAGTGCAAACAACATTCCTATTGGTGGCCCTGTGCCTGCGTCTACACCATCTTTGCACAAAAATGGAAACGTCGGGCTTAGGCCCTCTTTTGGATACTTCTACTCAGTTTGAACAATTTGGTGAGTTTTTGGGCAAACGTTCTCGGATTTCTATAGGCGTGCCTGACTCTCGTTCAACAAGAAAGAAGTAGAAAGTTGATGATGCCATGGGAGCTAGTTCAATTTCTATTGGTTCAACTGCGGTACCATCTGTGTTATTATCGGCAGAGGCTGTTACTCAGCCCTGCCGGACGCCATGACTATCTTATTTTGGAATCGGGGCTTGGGGTCTTCCCGGGCATTCTGGCGGTTGTGCCAACTGGTGCTTTTACATGGACCCTGAATTTTGTTCCTTTCTGAGACTAAATCACGTACGGACAGAAAGACTTTTATTCGTCAGTAGCTCAAAAAACTTGTTGCGCCTATGCTTAATAGCTAGAGGGTAAGTGCAAGTGCACGCTGTCACAAGTAATACTATGGAAATATTCCAAGTTCGTCTCCACAGGGACTAGTTTTCTTTTAAAACTAGACCCTCTTAGATACTTTGTTATCCACAGGGACTAATTTTCTTTTAAAATTGATTTTGTAAATTACTTAAATGAGTAATCGGGTTTGAGATGAAAAGTGGTAAAATTGTTGGGAACACAATTTAAAAACACAAAGATTAAAAGGTCAACCCCTATTGAGATTTAGTTCTAAAAAGATGAATTACACCTACCAAATGTGCCCGTATAATTATGTTCAATTTATGAAAACTGGTTCAACTCCTATTCCATACCACTTTTGGTTTCTTTAGAAGCTTAGGCTAGTGTTTACATATGTCTATGAAACTCTAGTCCTAAATAAATCAAATTCCAACTAACATTTAACGGATAAGAGAGTCTATGTCTAGGATCTTGTTTTAGTTCTTATTTATAAGTAAGTTTCCGTTTCACCTTGATTTGACCCGTTTGACTCTAACCTTTTCAGAATTAAATTCAAACTAATGTAATTTAAACAAGTGGCCAACAAGAAAATCAATTGGATAAATTGTATTAATCAAGATAAGCAATGAGAGTGTAATACGCCGTTCTCACTAATAGATGTAATTTAAAATAGATGAACTAAACCATTCGTATGAGGGTTGAAGAAATAATTTAGCTACTCATAGAAGTAAAAGAATTGAAATAACAAAAGAAGATGATAACAAAAGAAACGCATTTTCATTAGAAATGGAAAGAAAGTACAAAATTGAAACAAGTTGAATTGCAATAAAATAAACAAAGAATAATCGTAGAAAAATAATTGAAAAACAAAACTTAAATAAAAACTACAAAACTAAAATTGATAACAAAGTAGAAAGAAAAAACAAAAGCATGGAAAATGAGATGTGTTGTAATGATCGATGGAAGCTCAATTTATAGACTTGGGAGGTAACAAGGTGTTGAGAAATCCATGGGAAGTTGGGAACCACTAGTAGTTGTAGAGATCTTAGGAAAGAAGATCAAATCTTTGACCAATTGCTTGGTCAAAAGTGGTTATTCACGTTTTGATAATCTAGGCATCAAATGTGGCTGAAGCATTATGAAGCTGGATCTTTCAAAGTAATTTAGTTTGTGCATTCTTCTAGTAAGCTAGAAATTCTGGGGGTGTGATGCGTCTGACGAATTGTGAACACTAATCTTCACCTTTCTCTAAAAAACAAACATATTTACACCAATTAACCTTCATTTACCGATAATTGAATGCCCAAGTTCTTAATCACAAAACATGCATATTTTTACTAAGATAGATGCATGATCATACACTTTTCATCCGAAATAACCATTAACTAAGCATGCAAATCTATTCTTTTTAGCCTTTAATCAAGGTTTATCACTGAATTTTGGTAATTGTTTTAGTGTTGACTGTGTGGAAAAAGTGGTGGTTTGGCTCTCATTTGGTCATCTGAGGTGATGTTTAGTCTTATTTCTTTCTCGAAAAATCATAATGATGGATGGGTTGACTGGTAGGGTGATAAATGGCCTTTTATAGGTTTTTATGGGTTTTCAAAAACTGATTTAAAATACCAGTCCTTGTCTTTATTACGCCAGCTTCATGGGAGCGATGTGTCGCTTTGGCTTATCGATGGTGATTTCAATGAGATTTTAAGTAATGACGAGAAATTTGGGGGGCGAATGCGCGCTGAACGTGATATTTTTGCCTTCCAGCAAGTGATGGATGACTGTGGTTTGTTGGACTTGGGTTTTCGGGGGCCCGTTTGTACGTAGATAAATCGTCGACCAAGCTCTGCCTCTGTTCAAGAACGCCTTGATTGGGTTTTCTGTAATGTGGCTAGGCAGTCTCTTTTTCCTTCGCATTTTATTGATCATCTGGACTATTTCAAATCGGATCACTGGTTGCTAAACCTTATTTTGCTAAGCACATTAGCATCTACCATTCTTAGCGTCACTGTATCCGACGGATTGAGGACACTTGGTTGCACCAAGGAGACTACGTAGAGGTAGTTGTTGGTGGGTGGTCTTCTTCCTATCCTGCTCCGAACCCGTCGAACATTGCTGAGAAAACTCGTCATTGCATACAAAGATTGTGGTCATAGGGCCAGTCGAAGGTGGGTGGGTATTCAACTGGATTCAAGAGGCTATGGCTCGGGTTCAAGAGGCCATTGCGGCTCTCCCATTTCAGGCTTCCGAGGATTCCCTTGTTTCAGCAGAAGCTCATCTTGAGAACCTCCTATTAGAAGAAGAACAATACTAG

mRNA sequence

ATGAAAGACGTTTGGCGGGTGCATCAAAATATGCGTTTTGAACTGGTCCGGGATAATGTCTATATGATTCAGTTTCGTTCGCTTTTGGAGAAGAATCTGATTTTGAATTCGGGCCCTTTCACGTTCGACAATGCTTTATTAGTGCTAGTTTCTCCGACCGCAGAGGATCGGCCGATACCGTGGCGTTTACTCACTGCTCTTTCTGGGTTCAGATCGACAGGTGGTCCCTCGGGATGGTCGGCGTTCTACTCGAATTTTGGATCCGCCTTGGGTAGCGGCGACAGACCACCGACTTCTCTAATCGGGTCGGGTACGCCGGTACCATTGGGCTCTAATTCTTGTTCTCTCCCTTTGGGCCCATCTCTTGTAGCTGCTGATATTTGGCCGCCTAGTGTCAATCCAAGTGCAAACAACATTCCTATTGGTGGCCCTGTGCCTGCGTCTACACCATCTTTGCACAAAAATGGAAACGTCGGGCTTAGGCCCTCTTTTGGATACTTCTACTCAAGGCTGTTACTCAGCCCTGCCGGACGCCATGACTATCTTATTTTGGAATCGGGGCTTGGGCTTCATGGGAGCGATGTGTCGCTTTGGCTTATCGATGGTGATTTCAATGAGATTTTAAGTAATGACGAGAAATTTGGGGGGCGAATGCGCGCTGAACGTGATATTTTTGCCTTCCAGCAAGTGATGGATGACTGTGGTTTGTTGGACTTGGGTTTTCGGGGGCCCGTTTGGCCAGTCGAAGGTGGGTGGGTATTCAACTGGATTCAAGAGGCTATGGCTCGGGTTCAAGAGGCCATTGCGGCTCTCCCATTTCAGGCTTCCGAGGATTCCCTTGTTTCAGCAGAAGCTCATCTTGAGAACCTCCTATTAGAAGAAGAACAATACTAG

Coding sequence (CDS)

ATGAAAGACGTTTGGCGGGTGCATCAAAATATGCGTTTTGAACTGGTCCGGGATAATGTCTATATGATTCAGTTTCGTTCGCTTTTGGAGAAGAATCTGATTTTGAATTCGGGCCCTTTCACGTTCGACAATGCTTTATTAGTGCTAGTTTCTCCGACCGCAGAGGATCGGCCGATACCGTGGCGTTTACTCACTGCTCTTTCTGGGTTCAGATCGACAGGTGGTCCCTCGGGATGGTCGGCGTTCTACTCGAATTTTGGATCCGCCTTGGGTAGCGGCGACAGACCACCGACTTCTCTAATCGGGTCGGGTACGCCGGTACCATTGGGCTCTAATTCTTGTTCTCTCCCTTTGGGCCCATCTCTTGTAGCTGCTGATATTTGGCCGCCTAGTGTCAATCCAAGTGCAAACAACATTCCTATTGGTGGCCCTGTGCCTGCGTCTACACCATCTTTGCACAAAAATGGAAACGTCGGGCTTAGGCCCTCTTTTGGATACTTCTACTCAAGGCTGTTACTCAGCCCTGCCGGACGCCATGACTATCTTATTTTGGAATCGGGGCTTGGGCTTCATGGGAGCGATGTGTCGCTTTGGCTTATCGATGGTGATTTCAATGAGATTTTAAGTAATGACGAGAAATTTGGGGGGCGAATGCGCGCTGAACGTGATATTTTTGCCTTCCAGCAAGTGATGGATGACTGTGGTTTGTTGGACTTGGGTTTTCGGGGGCCCGTTTGGCCAGTCGAAGGTGGGTGGGTATTCAACTGGATTCAAGAGGCTATGGCTCGGGTTCAAGAGGCCATTGCGGCTCTCCCATTTCAGGCTTCCGAGGATTCCCTTGTTTCAGCAGAAGCTCATCTTGAGAACCTCCTATTAGAAGAAGAACAATACTAG

Protein sequence

MKDVWRVHQNMRFELVRDNVYMIQFRSLLEKNLILNSGPFTFDNALLVLVSPTAEDRPIPWRLLTALSGFRSTGGPSGWSAFYSNFGSALGSGDRPPTSLIGSGTPVPLGSNSCSLPLGPSLVAADIWPPSVNPSANNIPIGGPVPASTPSLHKNGNVGLRPSFGYFYSRLLLSPAGRHDYLILESGLGLHGSDVSLWLIDGDFNEILSNDEKFGGRMRAERDIFAFQQVMDDCGLLDLGFRGPVWPVEGGWVFNWIQEAMARVQEAIAALPFQASEDSLVSAEAHLENLLLEEEQY
Homology
[Close]
BLAST of MS025657 vs. NCBI nr
Match: KAG2635964.1 (hypothetical protein PVAP13_2NG409003 [Panicum virgatum])

HSP 1 Score: 75.5 bits (184), Expect = 8.7e-10
Identity = 36/91 (39.56%), Postives = 51/91 (56.04%), Query Frame = 0 

Query: 175 PAGRHDYLILESGLGLHGSDVSLWLIDGDFNEILSNDEKFGGRMRAERDIFAFQQVMDDC 234
           P   H +L  E+   LH      WL+ GDFNEIL + EK GGR R++  + AFQ  + DC
Sbjct: 94  PRWEHKHLTYEAMRSLHSGSDLPWLMLGDFNEILFHREKEGGRARSQAQLQAFQNSLMDC 153

Query: 235 GLLDLGFRGPVWPVEGGWVFNWIQEAMARVQ 266
           GL+D+GF G  +  + GW+   +   +A  Q
Sbjct: 154 GLVDIGFIGDNFTWQRGWIRERLDRGVANTQ 184

[Close]
BLAST of MS025657 vs. NCBI nr
Match: XP_022158119.1 (uncharacterized protein LOC111024676, partial [Momordica charantia])

HSP 1 Score: 73.2 bits (178), Expect = 4.3e-09
Identity = 30/59 (50.85%), Postives = 46/59 (77.97%), Query Frame = 0 

Query: 1   MKDVWRVHQNMRFELVRDNVYMIQFRSLLEKNLILNSGPFTFDNALLVLVSPTAEDRPI 60
           MK VW++H++ R E    N+Y+I F++++EK  +L+SGP+TFD +L VLVSPTA D+P+
Sbjct: 58  MKQVWKIHESTRIEAAGLNIYVIAFKTMVEKKRVLSSGPWTFDKSLFVLVSPTAADKPL 116

[Close]
BLAST of MS025657 vs. NCBI nr
Match: XP_022149484.1 (uncharacterized protein LOC111017902 [Momordica charantia])

HSP 1 Score: 72.8 bits (177), Expect = 5.7e-09
Identity = 33/59 (55.93%), Postives = 47/59 (79.66%), Query Frame = 0 

Query: 1   MKDVWRVHQNMRFELVRDNVYMIQFRSLLEKNLILNSGPFTFDNALLVLVSPTAEDRPI 60
           MK VWRVH + RFE +  N+Y+I F+SL EK+ +L+SGP+TF+ +LLVL SPTA ++P+
Sbjct: 58  MKSVWRVHNSTRFEPLGMNIYVILFKSLSEKSRVLSSGPWTFNKSLLVLTSPTATNQPL 116

[Close]
BLAST of MS025657 vs. NCBI nr
Match: XP_042942656.1 (uncharacterized protein LOC122276824 [Carya illinoinensis])

HSP 1 Score: 70.5 bits (171), Expect = 2.8e-08
Identity = 30/47 (63.83%), Postives = 37/47 (78.72%), Query Frame = 0 

Query: 198 WLIDGDFNEILSNDEKFGGRMRAERDIFAFQQVMDDCGLLDLGFRGP 245
           WL+ GDFNEIL   EK+GGR R ER + AF+QV++DC L D+GFRGP
Sbjct: 134 WLVFGDFNEILYQHEKWGGRDRLERQMLAFRQVVNDCSLRDIGFRGP 180

[Close]
BLAST of MS025657 vs. NCBI nr
Match: KAA3483859.1 (reverse transcriptase [Gossypium australe])

HSP 1 Score: 70.1 bits (170), Expect = 3.7e-08
Identity = 31/62 (50.00%), Postives = 42/62 (67.74%), Query Frame = 0 

Query: 190 LHGSDVSLWLIDGDFNEILSNDEKFGGRMRAERDIFAFQQVMDDCGLLDLGFRGPVWPVE 249
           LH S+   WL+ GDFNEI S+ EK GGR R+E  +  F+  ++DCGL+DLG+RG  +  E
Sbjct: 82  LHNSNYGPWLVLGDFNEITSSYEKRGGRFRSENQMSKFRDALEDCGLIDLGYRGRWYTWE 141

Query: 250 GG 252
            G
Sbjct: 142 RG 143

[Close]
BLAST of MS025657 vs. ExPASy TrEMBL
Match: A0A6J1DYG3 (uncharacterized protein LOC111024676 OS=Momordica charantia OX=3673 GN=LOC111024676 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.1e-09
Identity = 30/59 (50.85%), Postives = 46/59 (77.97%), Query Frame = 0 

Query: 1   MKDVWRVHQNMRFELVRDNVYMIQFRSLLEKNLILNSGPFTFDNALLVLVSPTAEDRPI 60
           MK VW++H++ R E    N+Y+I F++++EK  +L+SGP+TFD +L VLVSPTA D+P+
Sbjct: 58  MKQVWKIHESTRIEAAGLNIYVIAFKTMVEKKRVLSSGPWTFDKSLFVLVSPTAADKPL 116

[Close]
BLAST of MS025657 vs. ExPASy TrEMBL
Match: A0A6J1D765 (uncharacterized protein LOC111017902 OS=Momordica charantia OX=3673 GN=LOC111017902 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.7e-09
Identity = 33/59 (55.93%), Postives = 47/59 (79.66%), Query Frame = 0 

Query: 1   MKDVWRVHQNMRFELVRDNVYMIQFRSLLEKNLILNSGPFTFDNALLVLVSPTAEDRPI 60
           MK VWRVH + RFE +  N+Y+I F+SL EK+ +L+SGP+TF+ +LLVL SPTA ++P+
Sbjct: 58  MKSVWRVHNSTRFEPLGMNIYVILFKSLSEKSRVLSSGPWTFNKSLLVLTSPTATNQPL 116

[Close]
BLAST of MS025657 vs. ExPASy TrEMBL
Match: A0A2N9GJV1 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS27601 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.7e-09
Identity = 37/80 (46.25%), Postives = 47/80 (58.75%), Query Frame = 0 

Query: 165 GYFYSRLLLSPAGRHDYLILESGLGLHGSDVSLWLIDGDFNEILSNDEKFGGRMRAERDI 224
           G++ SR +   AG  D L +     L G     WL  GDFNE+L  +EK+G   R E  +
Sbjct: 189 GFYGSRTVAGKAGAWDLLRV-----LRGHHTLPWLCGGDFNELLQGEEKWGRAARPESQM 248

Query: 225 FAFQQVMDDCGLLDLGFRGP 245
            AF+QV+DDCG LDLGF GP
Sbjct: 249 KAFRQVVDDCGFLDLGFVGP 263

[Close]
BLAST of MS025657 vs. ExPASy TrEMBL
Match: A0A5B6WPQ1 (Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_005994 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.8e-08
Identity = 31/62 (50.00%), Postives = 42/62 (67.74%), Query Frame = 0 

Query: 190 LHGSDVSLWLIDGDFNEILSNDEKFGGRMRAERDIFAFQQVMDDCGLLDLGFRGPVWPVE 249
           LH S+   WL+ GDFNEI S+ EK GGR R+E  +  F+  ++DCGL+DLG+RG  +  E
Sbjct: 82  LHNSNYGPWLVLGDFNEITSSYEKRGGRFRSENQMSKFRDALEDCGLIDLGYRGRWYTWE 141

Query: 250 GG 252
            G
Sbjct: 142 RG 143

[Close]
BLAST of MS025657 vs. ExPASy TrEMBL
Match: A0A5B6WZS1 (Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_030212 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.3e-08
Identity = 28/47 (59.57%), Postives = 38/47 (80.85%), Query Frame = 0 

Query: 197 LWLIDGDFNEILSNDEKFGGRMRAERDIFAFQQVMDDCGLLDLGFRG 244
           LWL+ GDFNEIL + EK GG+MR ER + AF++ ++DC L+DLGF+G
Sbjct: 98  LWLVSGDFNEILYSHEKSGGQMREERKMLAFREALEDCNLMDLGFQG 144

The following BLAST results are available for this feature:
BLAST of MS025657 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG2635964.18.7e-1039.56hypothetical protein PVAP13_2NG409003 [Panicum virgatum][more]
XP_022158119.14.3e-0950.85uncharacterized protein LOC111024676, partial [Momordica charantia][more]
XP_022149484.15.7e-0955.93uncharacterized protein LOC111017902 [Momordica charantia][more]
XP_042942656.12.8e-0863.83uncharacterized protein LOC122276824 [Carya illinoinensis][more]
KAA3483859.13.7e-0850.00reverse transcriptase [Gossypium australe][more]
BLAST of MS025657 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS025657 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DYG32.1e-0950.85uncharacterized protein LOC111024676 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A6J1D7652.7e-0955.93uncharacterized protein LOC111017902 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
A0A2N9GJV12.7e-0946.25Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS27601 PE=4 SV=1[more]
A0A5B6WPQ11.8e-0850.00Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_005994 PE=4 SV=1[more]
A0A5B6WZS12.3e-0859.57Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_030212 PE=4 SV=1[more]
BLAST of MS025657 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS025657.1MS025657.1mRNA