MS025647 (gene) Bitter gourd (TR) v1

Overview


Name	MS025647
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Erythronate-4-phosphate dehydrogenase family protein
Location	scaffold4: 4189242 .. 4190352 (-)
RNA-Seq Expression	MS025647
Synteny	MS025647

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACTGTGAATCTGAAGTTGTTTCTAATGCTGCATTCTTGAAGGGAAAGCTTGTTGCAGGACAGGCATTGGTCAGTCCAACAATTGAAATGTACATTGCTGGAAGCTTTTCTGGAAACCCCGTCGTCATAACGAAAACTCTGCAACTCAGCTTTCGGAAGCACGGTCATAAACACAGGTTGGATGCAATACCAGAGTATGATACAACTGAACGGCAGAAAGACTCATATCCTGTATATGATTCACAAGTAAGCTTCTTGATAGCTTCTGATTCTACATTGAATCTTATTTCTTTCTGCTTTTCAACTGAAATAATTCAACAAGGAAGTTTCACTAGCCCCTTGTTACATCAAAAAATCTTTTCACTCGCATGTAATGTTTCCTGCACTGTAACCTACTTTTTTAAGATCCAAACAGTTCCATTTTGTTGCATAGAACTTAAAATCTTATCCAAAAAGTTCCATGTTGTTGCATAGAACTTAGAATCTTATCCAAAAAGCTCTCATTGTATAGAACTTAGAATCTTATCCAAGGCATATGAATCGATGAAAGAAGTATCAATAGGGACTGGGGAGCAACGTGCTAGCTGGGATGGTCCTCATTCTAATCACCATTACCTTGCTCTTTTGTTCTGCGACCCATTATTTTAAGTTTTCTTTGATGATCTATCAGAACCGGGTCATCTGACAAACATGGCCTCTCCCTCTCCTAAGACATGTTGAGAATTGTAAAATGGGGCCCCCGCCACTATTCCTGAAGTTTCCTTGGGAACCCTCCTCTTGATACTTCATCCATTCTTCTGTGTCGTTTCTCAAAAAGTAGCATATATTTGAAACATGACCAATTTTAGTGTACAAATCTATCTAATGATTGGATTGCTCTCTGCCATGGTTTCCACAATTCTTTGATAGTAATAATGGCTTCCTTCATGGTGTCGATTTTTCTTGCTGATGGGATGCTCAAGCCAGTTCTGTATAACATCTGTCTACTCAATCATTGTGCAGGTTTCAGAGTAAAGAAGTTACAGACAAGACAATGAAGATGACTACAGTAACGTGTACTGCGGAACAGACTACATGGAAAGAGAATATGGTGAACTATCCTGGTTAA

mRNA sequence

ATGCACTGTGAATCTGAAGTTGTTTCTAATGCTGCATTCTTGAAGGGAAAGCTTGTTGCAGGACAGGCATTGGTCAGTCCAACAATTGAAATGTACATTGCTGGAAGCTTTTCTGGAAACCCCGTCGTCATAACGAAAACTCTGCAACTCAGCTTTCGGAAGCACGGTCATAAACACAGGTTTCAGAGTAAAGAAGTTACAGACAAGACAATGAAGATGACTACAGTAACGTGTACTGCGGAACAGACTACATGGAAAGAGAATATGGTGAACTATCCTGGTTAA

Coding sequence (CDS)

ATGCACTGTGAATCTGAAGTTGTTTCTAATGCTGCATTCTTGAAGGGAAAGCTTGTTGCAGGACAGGCATTGGTCAGTCCAACAATTGAAATGTACATTGCTGGAAGCTTTTCTGGAAACCCCGTCGTCATAACGAAAACTCTGCAACTCAGCTTTCGGAAGCACGGTCATAAACACAGGTTTCAGAGTAAAGAAGTTACAGACAAGACAATGAAGATGACTACAGTAACGTGTACTGCGGAACAGACTACATGGAAAGAGAATATGGTGAACTATCCTGGTTAA

Protein sequence

MHCESEVVSNAAFLKGKLVAGQALVSPTIEMYIAGSFSGNPVVITKTLQLSFRKHGHKHRFQSKEVTDKTMKMTTVTCTAEQTTWKENMVNYPG

Homology

[Close]

BLAST of MS025647 vs. NCBI nr
Match: KAG7037857.1 (hypothetical protein SDJN02_01488, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 95.9 bits (237), Expect = 2.0e-16
Identity = 47/59 (79.66%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 1   MHCESEVVSNAAFLKGKLVAGQALVSPTIEMYIAGSFSGNPVVITKTLQLSFR-KHGHK 59
           M+CES VV++AAFLKGKL+AGQ  +SP IE+YIAGSFSGNPVV+TKTLQLSFR KHGHK
Sbjct: 152 MNCESGVVADAAFLKGKLIAGQQFISPKIEVYIAGSFSGNPVVLTKTLQLSFRKKHGHK 210

[Close]

BLAST of MS025647 vs. NCBI nr
Match: XP_022940521.1 (uncharacterized protein At1g01500-like [Cucurbita moschata])

HSP 1 Score: 95.9 bits (237), Expect = 2.0e-16
Identity = 47/59 (79.66%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 1   MHCESEVVSNAAFLKGKLVAGQALVSPTIEMYIAGSFSGNPVVITKTLQLSFR-KHGHK 59
           M+CES VV++AAFLKGKL+AGQ L+SP IE+YIAGSFSGNPVV+TKTLQL FR KHGHK
Sbjct: 152 MNCESGVVADAAFLKGKLIAGQQLISPKIEVYIAGSFSGNPVVLTKTLQLGFRKKHGHK 210

[Close]

BLAST of MS025647 vs. NCBI nr
Match: KAG6608533.1 (hypothetical protein SDJN03_01875, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 95.9 bits (237), Expect = 2.0e-16
Identity = 47/59 (79.66%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 1   MHCESEVVSNAAFLKGKLVAGQALVSPTIEMYIAGSFSGNPVVITKTLQLSFR-KHGHK 59
           M+CES VV++AAFLKGKL+AGQ L+SP IE+YIAGSFSGNPVV+TKTLQL FR KHGHK
Sbjct: 152 MNCESGVVADAAFLKGKLIAGQQLISPKIEVYIAGSFSGNPVVLTKTLQLGFRKKHGHK 210

[Close]

BLAST of MS025647 vs. NCBI nr
Match: XP_023525038.1 (uncharacterized protein At1g01500-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 94.4 bits (233), Expect = 5.7e-16
Identity = 46/59 (77.97%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 1   MHCESEVVSNAAFLKGKLVAGQALVSPTIEMYIAGSFSGNPVVITKTLQLSFR-KHGHK 59
           M+CES  V++AAFLKGKL+AGQ L+SP IE+YIAGSFSGNPVV+TKTLQL FR KHGHK
Sbjct: 152 MNCESGAVADAAFLKGKLIAGQQLISPKIEVYIAGSFSGNPVVLTKTLQLGFRKKHGHK 210

[Close]

BLAST of MS025647 vs. NCBI nr
Match: XP_004147785.1 (uncharacterized protein At1g01500 [Cucumis sativus] >KGN59953.1 hypothetical protein Csa_001764 [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 9.8e-16
Identity = 47/71 (66.20%), Postives = 56/71 (78.87%), Query Frame = 0


Query: 1   MHCESEVVSNAAFLKGKLVAGQALVSPTIEMYIAGSFSGNPVVITKTLQLSF-RKHGHKH 60
           M+CES  VS+AAF KGKL+ GQAL+SPTIE+YIAGSFSGNP+V+TKTLQL+F +KH HK 
Sbjct: 152 MNCESGAVSDAAFFKGKLIPGQALISPTIEVYIAGSFSGNPIVLTKTLQLNFWKKHSHKR 211

Query: 61  RFQSKEVTDKT 71
              S    D T
Sbjct: 212 MLDSIPEHDTT 222

[Close]

BLAST of MS025647 vs. ExPASy TrEMBL
Match: A0A6J1FIQ0 (uncharacterized protein At1g01500-like OS=Cucurbita moschata OX=3662 GN=LOC111446093 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 9.6e-17
Identity = 47/59 (79.66%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 1   MHCESEVVSNAAFLKGKLVAGQALVSPTIEMYIAGSFSGNPVVITKTLQLSFR-KHGHK 59
           M+CES VV++AAFLKGKL+AGQ L+SP IE+YIAGSFSGNPVV+TKTLQL FR KHGHK
Sbjct: 152 MNCESGVVADAAFLKGKLIAGQQLISPKIEVYIAGSFSGNPVVLTKTLQLGFRKKHGHK 210

[Close]

BLAST of MS025647 vs. ExPASy TrEMBL
Match: A0A0A0LDV5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G855960 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 4.7e-16
Identity = 47/71 (66.20%), Postives = 56/71 (78.87%), Query Frame = 0


Query: 1   MHCESEVVSNAAFLKGKLVAGQALVSPTIEMYIAGSFSGNPVVITKTLQLSF-RKHGHKH 60
           M+CES  VS+AAF KGKL+ GQAL+SPTIE+YIAGSFSGNP+V+TKTLQL+F +KH HK 
Sbjct: 152 MNCESGAVSDAAFFKGKLIPGQALISPTIEVYIAGSFSGNPIVLTKTLQLNFWKKHSHKR 211

Query: 61  RFQSKEVTDKT 71
              S    D T
Sbjct: 212 MLDSIPEHDTT 222

[Close]

BLAST of MS025647 vs. ExPASy TrEMBL
Match: A0A5D3D7W5 (Erythronate-4-phosphate dehydrogenase family protein isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00210 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.1e-15
Identity = 46/71 (64.79%), Postives = 56/71 (78.87%), Query Frame = 0


Query: 1   MHCESEVVSNAAFLKGKLVAGQALVSPTIEMYIAGSFSGNPVVITKTLQLSF-RKHGHKH 60
           M+CES  VS+A FLKGKL+ GQAL+SPTIE+YIAGSFSGNP+V+TKTLQL+F +KH +K 
Sbjct: 152 MNCESGFVSDAVFLKGKLIPGQALISPTIEVYIAGSFSGNPIVLTKTLQLNFWKKHSYKR 211

Query: 61  RFQSKEVTDKT 71
              S    D T
Sbjct: 212 MLDSIPEHDTT 222

[Close]

BLAST of MS025647 vs. ExPASy TrEMBL
Match: A0A1S3CRR3 (uncharacterized protein At1g01500-like OS=Cucumis melo OX=3656 GN=LOC103503952 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.1e-15
Identity = 46/71 (64.79%), Postives = 56/71 (78.87%), Query Frame = 0


Query: 1   MHCESEVVSNAAFLKGKLVAGQALVSPTIEMYIAGSFSGNPVVITKTLQLSF-RKHGHKH 60
           M+CES  VS+A FLKGKL+ GQAL+SPTIE+YIAGSFSGNP+V+TKTLQL+F +KH +K 
Sbjct: 152 MNCESGFVSDAVFLKGKLIPGQALISPTIEVYIAGSFSGNPIVLTKTLQLNFWKKHSYKR 211

Query: 61  RFQSKEVTDKT 71
              S    D T
Sbjct: 212 MLDSIPEHDTT 222

[Close]

BLAST of MS025647 vs. ExPASy TrEMBL
Match: A0A6J1J0K8 (uncharacterized protein At1g01500-like OS=Cucurbita maxima OX=3661 GN=LOC111480824 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.3e-15
Identity = 45/59 (76.27%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 1   MHCESEVVSNAAFLKGKLVAGQALVSPTIEMYIAGSFSGNPVVITKTLQLSFR-KHGHK 59
           M+CES VV++AAFLKGKL+AGQ L+SP IE+YIAGSFSGNPVV+TKTLQL  R KHG K
Sbjct: 152 MNCESGVVADAAFLKGKLIAGQQLISPKIEVYIAGSFSGNPVVLTKTLQLGVRKKHGQK 210

[Close]

BLAST of MS025647 vs. TAIR 10
Match: AT1G75180.1 (Erythronate-4-phosphate dehydrogenase family protein )

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-11
Identity = 32/59 (54.24%), Postives = 43/59 (72.88%), Query Frame = 0


Query: 1   MHCESEVVSNAAFLKGKLVAGQALVS--PTIEMYIAGSFSGNPVVITKTLQLSFR-KHG 57
           M+CE+E+ + + FLK K + G  L S  PTIE+Y+ G FSG P+++TKTLQL FR KHG
Sbjct: 154 MNCEAEITAESGFLKEKHIGGSELSSPLPTIEVYVTGCFSGTPIILTKTLQLGFRKKHG 212

[Close]

BLAST of MS025647 vs. TAIR 10
Match: AT1G75180.2 (Erythronate-4-phosphate dehydrogenase family protein )

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-11
Identity = 32/59 (54.24%), Postives = 43/59 (72.88%), Query Frame = 0


Query: 1   MHCESEVVSNAAFLKGKLVAGQALVS--PTIEMYIAGSFSGNPVVITKTLQLSFR-KHG 57
           M+CE+E+ + + FLK K + G  L S  PTIE+Y+ G FSG P+++TKTLQL FR KHG
Sbjct: 154 MNCEAEITAESGFLKEKHIGGSELSSPLPTIEVYVTGCFSGTPIILTKTLQLGFRKKHG 212

[Close]

BLAST of MS025647 vs. TAIR 10
Match: AT1G75180.3 (Erythronate-4-phosphate dehydrogenase family protein )

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-11
Identity = 32/59 (54.24%), Postives = 43/59 (72.88%), Query Frame = 0


Query: 1   MHCESEVVSNAAFLKGKLVAGQALVS--PTIEMYIAGSFSGNPVVITKTLQLSFR-KHG 57
           M+CE+E+ + + FLK K + G  L S  PTIE+Y+ G FSG P+++TKTLQL FR KHG
Sbjct: 154 MNCEAEITAESGFLKEKHIGGSELSSPLPTIEVYVTGCFSGTPIILTKTLQLGFRKKHG 212

[Close]

BLAST of MS025647 vs. TAIR 10
Match: AT1G19400.1 (Erythronate-4-phosphate dehydrogenase family protein )

HSP 1 Score: 62.8 bits (151), Expect = 1.7e-10
Identity = 36/96 (37.50%), Postives = 53/96 (55.21%), Query Frame = 0


Query: 1   MHCESEVVSNAAFLKGKLVAGQALVS--PTIEMYIAGSFSGNPVVITKTLQLSFRKHGHK 60
           M+CE+EV + + FLK K + GQ L S  PTIE+Y+ G FSG P+++TKTLQL  +K   +
Sbjct: 147 MNCEAEVTAGSGFLKEKSINGQELSSPLPTIEVYVTGCFSGTPIILTKTLQLGLKKKQSR 206

Query: 61  H-------RFQSKEVTDKTMKMTTVTCTAEQTTWKE 88
                    +++ E    T     +  T E   +KE
Sbjct: 207 RMALDAIPEYETAEPQKDTSYALDLQATTEYGNYKE 242

[Close]

BLAST of MS025647 vs. TAIR 10
Match: AT1G19400.2 (Erythronate-4-phosphate dehydrogenase family protein )

HSP 1 Score: 62.8 bits (151), Expect = 1.7e-10
Identity = 36/96 (37.50%), Postives = 53/96 (55.21%), Query Frame = 0


Query: 1   MHCESEVVSNAAFLKGKLVAGQALVS--PTIEMYIAGSFSGNPVVITKTLQLSFRKHGHK 60
           M+CE+EV + + FLK K + GQ L S  PTIE+Y+ G FSG P+++TKTLQL  +K   +
Sbjct: 147 MNCEAEVTAGSGFLKEKSINGQELSSPLPTIEVYVTGCFSGTPIILTKTLQLGLKKKQSR 206

Query: 61  H-------RFQSKEVTDKTMKMTTVTCTAEQTTWKE 88
                    +++ E    T     +  T E   +KE
Sbjct: 207 RMALDAIPEYETAEPQKDTSYALDLQATTEYGNYKE 242

The following BLAST results are available for this feature:

BLAST of MS025647 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7037857.1	2.0e-16	79.66	hypothetical protein SDJN02_01488, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022940521.1	2.0e-16	79.66	uncharacterized protein At1g01500-like [Cucurbita moschata]	[more]
KAG6608533.1	2.0e-16	79.66	hypothetical protein SDJN03_01875, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023525038.1	5.7e-16	77.97	uncharacterized protein At1g01500-like [Cucurbita pepo subsp. pepo]	[more]
XP_004147785.1	9.8e-16	66.20	uncharacterized protein At1g01500 [Cucumis sativus] >KGN59953.1 hypothetical pro...	[more]

BLAST of MS025647 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS025647 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FIQ0	9.6e-17	79.66	uncharacterized protein At1g01500-like OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]
A0A0A0LDV5	4.7e-16	66.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G855960 PE=4 SV=1	[more]
A0A5D3D7W5	3.1e-15	64.79	Erythronate-4-phosphate dehydrogenase family protein isoform 1 OS=Cucumis melo v...	[more]
A0A1S3CRR3	3.1e-15	64.79	uncharacterized protein At1g01500-like OS=Cucumis melo OX=3656 GN=LOC103503952 P...	[more]
A0A6J1J0K8	5.3e-15	76.27	uncharacterized protein At1g01500-like OS=Cucurbita maxima OX=3661 GN=LOC1114808...	[more]

BLAST of MS025647 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75180.1	1.2e-11	54.24	Erythronate-4-phosphate dehydrogenase family protein	[more]
AT1G75180.2	1.2e-11	54.24	Erythronate-4-phosphate dehydrogenase family protein	[more]
AT1G75180.3	1.2e-11	54.24	Erythronate-4-phosphate dehydrogenase family protein	[more]
AT1G19400.1	1.7e-10	37.50	Erythronate-4-phosphate dehydrogenase family protein	[more]
AT1G19400.2	1.7e-10	37.50	Erythronate-4-phosphate dehydrogenase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR42938	FORMATE DEHYDROGENASE 1	coord: 1..77
None	No IPR available	PANTHER	PTHR42938:SF7	ERYTHRONATE-4-PHOSPHATE DEHYDROGENASE FAMILY PROTEIN	coord: 1..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS025647.1	MS025647.1	mRNA