MS025491 (gene) Bitter gourd (TR) v1

Overview
NameMS025491
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPhosphoribosylformylglycinamidine synthase 2
Locationscaffold13: 1340025 .. 1340743 (-)
RNA-Seq ExpressionMS025491
SyntenyMS025491
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGCTGCGCTAAAGCGAAAGAAAACAACTTGTAGTGGAGGCATGATCATGATTGTGCTTCCCCCTGTGTCAAAAGGAGGCCAAAAAACACCTCATTTCAGACTTTCCCCACTCTGTTTAAGTGCACAGCAAACTGTAATCATTATGATAAAAACTCCACATTACTTTTTGTGGGAAATCCCATTTCCAGCATGCCATCTGTTTGATCAAATGCCTGACTACTGCTCTGACCATATTCATCCACAGGGCTCCGACTCTGGTCATGGTTTCAGCGGATCGGACCAGCGAAGAGCGGCGTTACCTTGTTGATTGCACTCCTGGCGGCGTCGGCGGCGCGGAGCAGGTGCACCGCCGTAGTGTGCTCTTGCTATGCACCCTCCGGTAGCTTCAACAACAAAGGCGAAGGAAGCAAGACGAGCACTTTTTACAAGACGCGTTCTTTTGCAGAAAAGAGAGATGGGGTCGGGCAAAACTTCCGTAATCATGAACTACAAGATGGGAGTGGAAATGGGTCTAATGGGGTTCGTGTTGAATTCCCAAATCTCAAGAGCAATCTGAAGAAGAAGACAAACGAGGAGGAGGAGGAGGAGAAAATTTTCGCTACAGAAACAAGGAAAGTGAACTGGCCAGATGCCCATGGCAAAGATATTGCTCATATCCAAGAGTTTGAACCGAGGTATGGGTTTGTTTATGTCTGGATGATTGATTTGTCATAA

mRNA sequence

ATGAGTGCTGCGCTAAAGCGAAAGAAAACAACTTGTAGTGGAGGCATGATCATGATTGTGCTTCCCCCTGTGTCAAAAGGAGGCCAAAAAACACCTCATTTCAGACTTTCCCCACTCTGGCTCCGACTCTGGTCATGGTTTCAGCGGATCGGACCAGCGAAGAGCGGCGTTACCTTGTTGATTGCACTCCTGGCGGCGTCGGCGGCGCGGAGCAGGTGCACCGCCGTAGTGTGCTCTTGCTATGCACCCTCCGGTAGCTTCAACAACAAAGGCGAAGGAAGCAAGACGAGCACTTTTTACAAGACGCGTTCTTTTGCAGAAAAGAGAGATGGGGTCGGGCAAAACTTCCGTAATCATGAACTACAAGATGGGAGTGGAAATGGGTCTAATGGGGTTCGTGTTGAATTCCCAAATCTCAAGAGCAATCTGAAGAAGAAGACAAACGAGGAGGAGGAGGAGGAGAAAATTTTCGCTACAGAAACAAGGAAAGTGAACTGGCCAGATGCCCATGGCAAAGATATTGCTCATATCCAAGAGTTTGAACCGAGGTATGGGTTTGTTTATGTCTGGATGATTGATTTGTCATAA

Coding sequence (CDS)

ATGAGTGCTGCGCTAAAGCGAAAGAAAACAACTTGTAGTGGAGGCATGATCATGATTGTGCTTCCCCCTGTGTCAAAAGGAGGCCAAAAAACACCTCATTTCAGACTTTCCCCACTCTGGCTCCGACTCTGGTCATGGTTTCAGCGGATCGGACCAGCGAAGAGCGGCGTTACCTTGTTGATTGCACTCCTGGCGGCGTCGGCGGCGCGGAGCAGGTGCACCGCCGTAGTGTGCTCTTGCTATGCACCCTCCGGTAGCTTCAACAACAAAGGCGAAGGAAGCAAGACGAGCACTTTTTACAAGACGCGTTCTTTTGCAGAAAAGAGAGATGGGGTCGGGCAAAACTTCCGTAATCATGAACTACAAGATGGGAGTGGAAATGGGTCTAATGGGGTTCGTGTTGAATTCCCAAATCTCAAGAGCAATCTGAAGAAGAAGACAAACGAGGAGGAGGAGGAGGAGAAAATTTTCGCTACAGAAACAAGGAAAGTGAACTGGCCAGATGCCCATGGCAAAGATATTGCTCATATCCAAGAGTTTGAACCGAGGTATGGGTTTGTTTATGTCTGGATGATTGATTTGTCATAA

Protein sequence

MSAALKRKKTTCSGGMIMIVLPPVSKGGQKTPHFRLSPLWLRLWSWFQRIGPAKSGVTLLIALLAASAARSRCTAVVCSCYAPSGSFNNKGEGSKTSTFYKTRSFAEKRDGVGQNFRNHELQDGSGNGSNGVRVEFPNLKSNLKKKTNEEEEEEKIFATETRKVNWPDAHGKDIAHIQEFEPRYGFVYVWMIDLS
Homology
BLAST of MS025491 vs. NCBI nr
Match: KAG7026120.1 (hypothetical protein SDJN02_12619 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 226.1 bits (575), Expect = 2.6e-55
Identity = 115/150 (76.67%), Postives = 130/150 (86.67%), Query Frame = 0

Query: 34   FRLSPLWLRLWSWFQRIGPAKSGVTLLIALLAASAARSRCTAVVCSCYAPSGSFNNKGEG 93
            F+ +  WL++WSWFQRI P K GV+LLI LL ASAARSRCTAVVCSCYAPSGSFNNKGEG
Sbjct: 852  FKCTANWLQVWSWFQRIEPVKRGVSLLIVLL-ASAARSRCTAVVCSCYAPSGSFNNKGEG 911

Query: 94   SKTSTFYKTRSFAEKRDGVGQNFR-NHELQDGSGNGSNGVRVEFPNLKSNLKKKTNEEEE 153
            SKTST +++RS  EKRDGV Q +R NHELQDG+GNGSNG+ +E PNLKSNLKKKT E+EE
Sbjct: 912  SKTSTIFRSRSVEEKRDGVKQKWRNNHELQDGNGNGSNGIHLEIPNLKSNLKKKTKEKEE 971

Query: 154  EEKIFATETRKVNWPDAHGKDIAHIQEFEP 183
            EE+   TETRKVNWPDAHGKDIAHIQEF+P
Sbjct: 972  EEETCPTETRKVNWPDAHGKDIAHIQEFDP 1000

BLAST of MS025491 vs. NCBI nr
Match: KAG6593791.1 (hypothetical protein SDJN03_13267, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 221.9 bits (564), Expect = 5.0e-54
Identity = 120/169 (71.01%), Postives = 135/169 (79.88%), Query Frame = 0

Query: 15  GMIMIVLPPVSKGGQKTPHFRLSPLWLRLWSWFQRIGPAKSGVTLLIALLAASAARSRCT 74
           G+   VLP V          RL  + L++WSWFQRI P K GV+LLI LL ASAARSRCT
Sbjct: 821 GISTTVLPEVLSRLSSRVFARL--IRLQVWSWFQRIEPVKRGVSLLIVLL-ASAARSRCT 880

Query: 75  AVVCSCYAPSGSFNNKGEGSKTSTFYKTRSFAEKRDGVGQNFR-NHELQDGSGNGSNGVR 134
           AVVCSCYAPSGSFNNKGEGSKTST +++RS  EKRDGV Q +R NHELQDG+GNGSNG+ 
Sbjct: 881 AVVCSCYAPSGSFNNKGEGSKTSTIFRSRSVEEKRDGVKQKWRNNHELQDGNGNGSNGIH 940

Query: 135 VEFPNLKSNLKKKTNEEEEEEKIFATETRKVNWPDAHGKDIAHIQEFEP 183
           +E PNLKSNLKKKT E+EEEE+   TETRKVNWPDAHGKDIAHIQEF+P
Sbjct: 941 LEIPNLKSNLKKKTKEKEEEEETCPTETRKVNWPDAHGKDIAHIQEFDP 986

BLAST of MS025491 vs. NCBI nr
Match: KAF3972265.1 (hypothetical protein CMV_004221 [Castanea mollissima])

HSP 1 Score: 110.9 bits (276), Expect = 1.2e-20
Identity = 66/132 (50.00%), Postives = 90/132 (68.18%), Query Frame = 0

Query: 60  LIALLAASAARSRCTAVVCSCYAPSGSFNNKGEGSKTST---FYKTRSFAEKRDGVGQNF 119
           ++++L A++A++RC+A+VCSCY PS S +NK E S  S+     K +S AEKRDGV +  
Sbjct: 1   MLSVLLAASAQNRCSALVCSCYVPSRSLDNKVEESNRSSNNNNTKKQSRAEKRDGVMEEL 60

Query: 120 RNHELQDGSG------NGSNGVRVEFPNLKSNLKKKTNEEEEEEKIFATETRKVNWPDAH 179
            NHEL+  +G      +GSNG  +E P LKSNLKK T  +  + ++   E RKV+WPDAH
Sbjct: 61  HNHELRLQNGGNYSRSSGSNGPHIEHPTLKSNLKKTTIVDGNQPRL---EKRKVSWPDAH 120

Query: 180 GKDIAHIQEFEP 183
           GKDIAH+ EFEP
Sbjct: 121 GKDIAHVHEFEP 129

BLAST of MS025491 vs. NCBI nr
Match: XP_024931762.1 (uncharacterized protein LOC112492388 [Ziziphus jujuba])

HSP 1 Score: 110.5 bits (275), Expect = 1.6e-20
Identity = 84/207 (40.58%), Postives = 109/207 (52.66%), Query Frame = 0

Query: 1   MSA-ALKRKKTTCSGGMIMIVLPPVSKGGQKTPHFRLSPLWLRLWSWFQRI--GPAKSGV 60
           MSA A K+K+ T SGG + I+                    L+LWSW   I     +  +
Sbjct: 1   MSAKAKKQKEATFSGGGMKII--------------------LQLWSWCFSIHRNRKERRI 60

Query: 61  TLLIALLAASAARSRCTAVVCSCYAPSGSFNNKGE----------GSKTSTFYKTRSFAE 120
           TL   LLAAS A+++CT +V SCY PS  ++NKGE           S +    K +S AE
Sbjct: 61  TLSFVLLAAS-AQNKCTTLVWSCYVPSKGYHNKGEENSKNDDNNDNSNSIISDKKQSVAE 120

Query: 121 KRDGVGQNFRNHEL------------QDGSGNGSNGVRVEFPNLKSNLKKKTNEEEEEEK 180
           K+DGV +   N+E             ++   +GSNG  +E  NLKSNLKK   EE  +  
Sbjct: 121 KKDGVKEEVDNNEARGCDSSSSNNGGRNSRSSGSNGPHIEHSNLKSNLKKAVVEENNQ-- 180

Query: 181 IFATETRKVNWPDAHGKDIAHIQEFEP 183
              TE RKV+WPDAHGKDIAH+QEFEP
Sbjct: 181 -LRTERRKVSWPDAHGKDIAHVQEFEP 183

BLAST of MS025491 vs. NCBI nr
Match: KAG6731304.1 (hypothetical protein I3842_01G123200, partial [Carya illinoinensis])

HSP 1 Score: 109.0 bits (271), Expect = 4.7e-20
Identity = 73/141 (51.77%), Postives = 93/141 (65.96%), Query Frame = 0

Query: 56  GVTLLIALLAASAARSRCTAVVCSCYAPSGSFNNKGEG---SKTSTFYKTRSFAEKRDGV 115
           G   L  LLAAS A++RCTA+VCSCY PS S +N+GE    S  S   K +S AEK+DGV
Sbjct: 5   GRAFLFVLLAAS-AQNRCTALVCSCYVPSRSLDNRGEESNISSNSNNNKKQSPAEKKDGV 64

Query: 116 GQNFRNHELQ-----DGSG----NGSNGVRVEFPNLKSNLKKKT--NEEEEEEKIFATET 175
            +   N+ELQ     +GS     +G+NG ++E P LKSNLKK T     + +++I   E 
Sbjct: 65  MEKLHNYELQLQNKSNGSSYCRRSGTNGPQIERPTLKSNLKKGTTVGVGDNQQRI---EK 124

Query: 176 RKVNWPDAHGKDIAHIQEFEP 183
           RKV+WPDAHGKDIAH+QEFEP
Sbjct: 125 RKVSWPDAHGKDIAHVQEFEP 141

BLAST of MS025491 vs. ExPASy TrEMBL
Match: A0A2N9F5A9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS9921 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 3.7e-23
Identity = 69/138 (50.00%), Postives = 92/138 (66.67%), Query Frame = 0

Query: 59  LLIALLAASAARSRCTAVVCSCYAPSGSFNNKGEGSK---TSTFYKTRSFAEKRDGVGQN 118
           L++++L A++A++RC+A+VCSCY PS + +NKGE S     S   K +S AEKRDGV + 
Sbjct: 15  LVVSVLLAASAQNRCSALVCSCYVPSRNLDNKGEESNRSINSNNTKKQSSAEKRDGVMEE 74

Query: 119 FRNHELQ----------DGSGNGSNGVRVEFPNLKSNLKKKTNEEEEEEKIFATETRKVN 178
             NHELQ             G+GSNG  +E P LKSNLKK T  ++ + ++   E RKV+
Sbjct: 75  LHNHELQLQNKSNGGNHYSRGSGSNGPHIEHPTLKSNLKKTTLVDDNQLRL---EKRKVS 134

Query: 179 WPDAHGKDIAHIQEFEPR 184
           WPDAHGKDIAH+ EFEPR
Sbjct: 135 WPDAHGKDIAHVHEFEPR 149

BLAST of MS025491 vs. ExPASy TrEMBL
Match: A0A6P6GC85 (uncharacterized protein LOC112492388 OS=Ziziphus jujuba OX=326968 GN=LOC112492388 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 7.8e-21
Identity = 84/207 (40.58%), Postives = 109/207 (52.66%), Query Frame = 0

Query: 1   MSA-ALKRKKTTCSGGMIMIVLPPVSKGGQKTPHFRLSPLWLRLWSWFQRI--GPAKSGV 60
           MSA A K+K+ T SGG + I+                    L+LWSW   I     +  +
Sbjct: 1   MSAKAKKQKEATFSGGGMKII--------------------LQLWSWCFSIHRNRKERRI 60

Query: 61  TLLIALLAASAARSRCTAVVCSCYAPSGSFNNKGE----------GSKTSTFYKTRSFAE 120
           TL   LLAAS A+++CT +V SCY PS  ++NKGE           S +    K +S AE
Sbjct: 61  TLSFVLLAAS-AQNKCTTLVWSCYVPSKGYHNKGEENSKNDDNNDNSNSIISDKKQSVAE 120

Query: 121 KRDGVGQNFRNHEL------------QDGSGNGSNGVRVEFPNLKSNLKKKTNEEEEEEK 180
           K+DGV +   N+E             ++   +GSNG  +E  NLKSNLKK   EE  +  
Sbjct: 121 KKDGVKEEVDNNEARGCDSSSSNNGGRNSRSSGSNGPHIEHSNLKSNLKKAVVEENNQ-- 180

Query: 181 IFATETRKVNWPDAHGKDIAHIQEFEP 183
              TE RKV+WPDAHGKDIAH+QEFEP
Sbjct: 181 -LRTERRKVSWPDAHGKDIAHVQEFEP 183

BLAST of MS025491 vs. ExPASy TrEMBL
Match: A0A7J9E5R1 (Uncharacterized protein (Fragment) OS=Gossypium trilobum OX=34281 GN=Gotri_017094 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.1e-17
Identity = 70/144 (48.61%), Postives = 93/144 (64.58%), Query Frame = 0

Query: 61  IALLAASAARSRCTAVVCSCYAPSGSFNNKGE-----GSKTSTFYKTRSFAEK--RDGV- 120
           +ALLAAS A++RCTA+VCSCY PS + ++K E      S +S+  K R+  EK  +DGV 
Sbjct: 1   LALLAAS-AQNRCTALVCSCYVPSRNSSSKEEEIISNRSSSSSNIKKRTSLEKNIKDGVM 60

Query: 121 ----GQNFRNHELQ-----DGSGNGSNGVRVE-FPNLKSNLKKKT----NEEEEEEKIFA 180
               G N  N ELQ       +G+G+NG  +E  P LKSNLKK T    ++ + E ++  
Sbjct: 61  EEAAGNNNNNDELQLSVDKISNGSGTNGSHIEPNPTLKSNLKKTTTAAADDNDGEGELMK 120

Query: 181 TETRKVNWPDAHGKDIAHIQEFEP 183
           TE RKV+WPDAHGKDIAH++EFEP
Sbjct: 121 TERRKVSWPDAHGKDIAHVREFEP 143

BLAST of MS025491 vs. ExPASy TrEMBL
Match: A0A7J8RS91 (Uncharacterized protein (Fragment) OS=Gossypium davidsonii OX=34287 GN=Godav_016268 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.1e-17
Identity = 70/144 (48.61%), Postives = 93/144 (64.58%), Query Frame = 0

Query: 61  IALLAASAARSRCTAVVCSCYAPSGSFNNKGE-----GSKTSTFYKTRSFAEK--RDGV- 120
           +ALLAAS A++RCTA+VCSCY PS + ++K E      S +S+  K R+  EK  +DGV 
Sbjct: 15  LALLAAS-AQNRCTALVCSCYVPSRNSSSKEEEIISNRSSSSSNIKKRTSLEKNIKDGVM 74

Query: 121 ----GQNFRNHELQ-----DGSGNGSNGVRVE-FPNLKSNLKKKT----NEEEEEEKIFA 180
               G N  N ELQ       +G+G+NG  +E  P LKSNLKK T    ++ + E ++  
Sbjct: 75  EEAAGNNNNNDELQLSIDKISNGSGTNGSHIEPNPTLKSNLKKTTTAAADDNDGEGELMK 134

Query: 181 TETRKVNWPDAHGKDIAHIQEFEP 183
           TE RKV+WPDAHGKDIAH++EFEP
Sbjct: 135 TERRKVSWPDAHGKDIAHVREFEP 157

BLAST of MS025491 vs. ExPASy TrEMBL
Match: A0A7J8M2J2 (Uncharacterized protein (Fragment) OS=Gossypium lobatum OX=34289 GN=Golob_015857 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.1e-17
Identity = 70/144 (48.61%), Postives = 93/144 (64.58%), Query Frame = 0

Query: 61  IALLAASAARSRCTAVVCSCYAPSGSFNNKGE-----GSKTSTFYKTRSFAEK--RDGV- 120
           +ALLAAS A++RCTA+VCSCY PS + ++K E      S +S+  K R+  EK  +DGV 
Sbjct: 1   LALLAAS-AQNRCTALVCSCYVPSRNSSSKEEEIISNRSSSSSNIKKRTSLEKNIKDGVM 60

Query: 121 ----GQNFRNHELQ-----DGSGNGSNGVRVE-FPNLKSNLKKKT----NEEEEEEKIFA 180
               G N  N ELQ       +G+G+NG  +E  P LKSNLKK T    ++ + E ++  
Sbjct: 61  EEAAGNNNNNDELQLSIDKISNGSGTNGSHIEPNPTLKSNLKKTTTAAADDNDGEGELMK 120

Query: 181 TETRKVNWPDAHGKDIAHIQEFEP 183
           TE RKV+WPDAHGKDIAH++EFEP
Sbjct: 121 TERRKVSWPDAHGKDIAHVREFEP 143

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7026120.12.6e-5576.67hypothetical protein SDJN02_12619 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6593791.15.0e-5471.01hypothetical protein SDJN03_13267, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAF3972265.11.2e-2050.00hypothetical protein CMV_004221 [Castanea mollissima][more]
XP_024931762.11.6e-2040.58uncharacterized protein LOC112492388 [Ziziphus jujuba][more]
KAG6731304.14.7e-2051.77hypothetical protein I3842_01G123200, partial [Carya illinoinensis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2N9F5A93.7e-2350.00Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS9921 PE=4 SV=1[more]
A0A6P6GC857.8e-2140.58uncharacterized protein LOC112492388 OS=Ziziphus jujuba OX=326968 GN=LOC11249238... [more]
A0A7J9E5R13.1e-1748.61Uncharacterized protein (Fragment) OS=Gossypium trilobum OX=34281 GN=Gotri_01709... [more]
A0A7J8RS913.1e-1748.61Uncharacterized protein (Fragment) OS=Gossypium davidsonii OX=34287 GN=Godav_016... [more]
A0A7J8M2J23.1e-1748.61Uncharacterized protein (Fragment) OS=Gossypium lobatum OX=34289 GN=Golob_015857... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33401LIGHT-HARVESTING COMPLEX-LIKE PROTEIN OHP2, CHLOROPLASTICcoord: 93..182
NoneNo IPR availablePANTHERPTHR33401:SF21SUBFAMILY NOT NAMEDcoord: 93..182

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS025491.1MS025491.1mRNA