MS025320 (gene) Bitter gourd (TR) v1

Overview
NameMS025320
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionrab9 effector protein with kelch motifs-like
Locationscaffold25: 1739641 .. 1739987 (+)
RNA-Seq ExpressionMS025320
SyntenyMS025320
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGTCTTCTATGGTGGGAGGAGGTGGAGGAGGAGAAATTTCCAAGAAGGCAATGTGGCTCTATCCTAAGGTCATGGGCTTCACCCCCTCTGAGCGATGGGGGCATTCTGCTTGCTATTACCAAGGAAATGTCTATGTTTTTGGGGTATGTGACTTTTGTTTTTCTTCCTCCCTCTGAACTTTCAATTCTTTGGTATTTTTTTTTCTGTTGTTTCTTGGCTTGTTTCCTTTGAGGTTGTCTGGAACACCGAGTCTGAGCTGTCTGTGATTGCTGTGCTGTTTAAGCTATTTGCCTTCATCAATTCCGCTAGTGAATGGCTGCCTGCTCCTTTTCTGTTCAGATGA

mRNA sequence

ATGAGGTCTTCTATGGTGGGAGGAGGTGGAGGAGGAGAAATTTCCAAGAAGGCAATGTGGCTCTATCCTAAGGTCATGGGCTTCACCCCCTCTGAGCGATGGGGGCATTCTGCTTGCTATTACCAAGGAAATGTCTATGTTTTTGGGGTTGTCTGGAACACCGAGTCTGAGCTGTCTGTGATTGCTGTGCTGTTTAAGCTATTTGCCTTCATCAATTCCGCTAGTGAATGGCTGCCTGCTCCTTTTCTGTTCAGATGA

Coding sequence (CDS)

ATGAGGTCTTCTATGGTGGGAGGAGGTGGAGGAGGAGAAATTTCCAAGAAGGCAATGTGGCTCTATCCTAAGGTCATGGGCTTCACCCCCTCTGAGCGATGGGGGCATTCTGCTTGCTATTACCAAGGAAATGTCTATGTTTTTGGGGTTGTCTGGAACACCGAGTCTGAGCTGTCTGTGATTGCTGTGCTGTTTAAGCTATTTGCCTTCATCAATTCCGCTAGTGAATGGCTGCCTGCTCCTTTTCTGTTCAGATGA

Protein sequence

MRSSMVGGGGGGEISKKAMWLYPKVMGFTPSERWGHSACYYQGNVYVFGVVWNTESELSVIAVLFKLFAFINSASEWLPAPFLFR
Homology
BLAST of MS025320 vs. NCBI nr
Match: XP_022156432.1 (rab9 effector protein with kelch motifs-like [Momordica charantia] >XP_022156433.1 rab9 effector protein with kelch motifs-like [Momordica charantia])

HSP 1 Score: 109.8 bits (273), Expect = 1.2e-20
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0

Query: 1  MRSSMVGGGGGGEISKKAMWLYPKVMGFTPSERWGHSACYYQGNVYVFG 50
          MRSSMVGGGGGGEISKKAMWLYPKVMGFTPSERWGHSACYYQGNVYVFG
Sbjct: 1  MRSSMVGGGGGGEISKKAMWLYPKVMGFTPSERWGHSACYYQGNVYVFG 49

BLAST of MS025320 vs. NCBI nr
Match: TYJ96461.1 (acyl-CoA-binding domain-containing protein 4 [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 2.3e-16
Identity = 44/48 (91.67%), Postives = 45/48 (93.75%), Query Frame = 0

Query: 3  SSMVGGGGGGEIS-KKAMWLYPKVMGFTPSERWGHSACYYQGNVYVFG 50
          S +VGGGGGGE S KKAMWLYPKVMGFTPSERWGHSACYYQGNVYVFG
Sbjct: 4  SVVVGGGGGGETSKKKAMWLYPKVMGFTPSERWGHSACYYQGNVYVFG 51

BLAST of MS025320 vs. NCBI nr
Match: KAA0048075.1 (acyl-CoA-binding domain-containing protein 4 [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 2.3e-16
Identity = 44/48 (91.67%), Postives = 45/48 (93.75%), Query Frame = 0

Query: 3  SSMVGGGGGGEIS-KKAMWLYPKVMGFTPSERWGHSACYYQGNVYVFG 50
          S +VGGGGGGE S KKAMWLYPKVMGFTPSERWGHSACYYQGNVYVFG
Sbjct: 4  SVVVGGGGGGETSKKKAMWLYPKVMGFTPSERWGHSACYYQGNVYVFG 51

BLAST of MS025320 vs. NCBI nr
Match: XP_008453336.1 (PREDICTED: acyl-CoA-binding domain-containing protein 4 [Cucumis melo])

HSP 1 Score: 95.5 bits (236), Expect = 2.3e-16
Identity = 44/48 (91.67%), Postives = 45/48 (93.75%), Query Frame = 0

Query: 3  SSMVGGGGGGEIS-KKAMWLYPKVMGFTPSERWGHSACYYQGNVYVFG 50
          S +VGGGGGGE S KKAMWLYPKVMGFTPSERWGHSACYYQGNVYVFG
Sbjct: 4  SVVVGGGGGGETSKKKAMWLYPKVMGFTPSERWGHSACYYQGNVYVFG 51

BLAST of MS025320 vs. NCBI nr
Match: KAG7030117.1 (Rab9 effector protein with kelch motifs [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 92.0 bits (227), Expect = 2.6e-15
Identity = 43/51 (84.31%), Postives = 44/51 (86.27%), Query Frame = 0

Query: 1  MRSSMVGGGGGG--EISKKAMWLYPKVMGFTPSERWGHSACYYQGNVYVFG 50
          MRSS+ GGGGGG     KKAMWLYPKVMGF PSERWGHSACYYQGNVYVFG
Sbjct: 1  MRSSVGGGGGGGGETSKKKAMWLYPKVMGFIPSERWGHSACYYQGNVYVFG 51

BLAST of MS025320 vs. ExPASy TrEMBL
Match: A0A6J1DS20 (rab9 effector protein with kelch motifs-like OS=Momordica charantia OX=3673 GN=LOC111023325 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 5.8e-21
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0

Query: 1  MRSSMVGGGGGGEISKKAMWLYPKVMGFTPSERWGHSACYYQGNVYVFG 50
          MRSSMVGGGGGGEISKKAMWLYPKVMGFTPSERWGHSACYYQGNVYVFG
Sbjct: 1  MRSSMVGGGGGGEISKKAMWLYPKVMGFTPSERWGHSACYYQGNVYVFG 49

BLAST of MS025320 vs. ExPASy TrEMBL
Match: A0A5A7U332 (Acyl-CoA-binding domain-containing protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G001460 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.1e-16
Identity = 44/48 (91.67%), Postives = 45/48 (93.75%), Query Frame = 0

Query: 3  SSMVGGGGGGEIS-KKAMWLYPKVMGFTPSERWGHSACYYQGNVYVFG 50
          S +VGGGGGGE S KKAMWLYPKVMGFTPSERWGHSACYYQGNVYVFG
Sbjct: 4  SVVVGGGGGGETSKKKAMWLYPKVMGFTPSERWGHSACYYQGNVYVFG 51

BLAST of MS025320 vs. ExPASy TrEMBL
Match: A0A5D3BCW3 (Acyl-CoA-binding domain-containing protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G001040 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.1e-16
Identity = 44/48 (91.67%), Postives = 45/48 (93.75%), Query Frame = 0

Query: 3  SSMVGGGGGGEIS-KKAMWLYPKVMGFTPSERWGHSACYYQGNVYVFG 50
          S +VGGGGGGE S KKAMWLYPKVMGFTPSERWGHSACYYQGNVYVFG
Sbjct: 4  SVVVGGGGGGETSKKKAMWLYPKVMGFTPSERWGHSACYYQGNVYVFG 51

BLAST of MS025320 vs. ExPASy TrEMBL
Match: A0A1S3BVZ8 (acyl-CoA-binding domain-containing protein 4 OS=Cucumis melo OX=3656 GN=LOC103494083 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.1e-16
Identity = 44/48 (91.67%), Postives = 45/48 (93.75%), Query Frame = 0

Query: 3  SSMVGGGGGGEIS-KKAMWLYPKVMGFTPSERWGHSACYYQGNVYVFG 50
          S +VGGGGGGE S KKAMWLYPKVMGFTPSERWGHSACYYQGNVYVFG
Sbjct: 4  SVVVGGGGGGETSKKKAMWLYPKVMGFTPSERWGHSACYYQGNVYVFG 51

BLAST of MS025320 vs. ExPASy TrEMBL
Match: A0A0A0LM40 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034590 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 7.3e-16
Identity = 42/44 (95.45%), Postives = 42/44 (95.45%), Query Frame = 0

Query: 7  GGGGGGEIS-KKAMWLYPKVMGFTPSERWGHSACYYQGNVYVFG 50
          GGGGGGE S KKAMWLYPKVMGFTPSERWGHSACYYQGNVYVFG
Sbjct: 13 GGGGGGETSKKKAMWLYPKVMGFTPSERWGHSACYYQGNVYVFG 56

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022156432.11.2e-20100.00rab9 effector protein with kelch motifs-like [Momordica charantia] >XP_022156433... [more]
TYJ96461.12.3e-1691.67acyl-CoA-binding domain-containing protein 4 [Cucumis melo var. makuwa][more]
KAA0048075.12.3e-1691.67acyl-CoA-binding domain-containing protein 4 [Cucumis melo var. makuwa][more]
XP_008453336.12.3e-1691.67PREDICTED: acyl-CoA-binding domain-containing protein 4 [Cucumis melo][more]
KAG7030117.12.6e-1584.31Rab9 effector protein with kelch motifs [Cucurbita argyrosperma subsp. argyrospe... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DS205.8e-21100.00rab9 effector protein with kelch motifs-like OS=Momordica charantia OX=3673 GN=L... [more]
A0A5A7U3321.1e-1691.67Acyl-CoA-binding domain-containing protein 4 OS=Cucumis melo var. makuwa OX=1194... [more]
A0A5D3BCW31.1e-1691.67Acyl-CoA-binding domain-containing protein 4 OS=Cucumis melo var. makuwa OX=1194... [more]
A0A1S3BVZ81.1e-1691.67acyl-CoA-binding domain-containing protein 4 OS=Cucumis melo OX=3656 GN=LOC10349... [more]
A0A0A0LM407.3e-1695.45Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034590 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR23244KELCH REPEAT DOMAINcoord: 14..49
NoneNo IPR availablePANTHERPTHR23244:SF455OS01G0300900 PROTEINcoord: 14..49
IPR015915Kelch-type beta propellerSUPERFAMILY117281Kelch motifcoord: 12..51

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS025320.1MS025320.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding