MS025089 (gene) Bitter gourd (TR) v1

Overview


Name	MS025089
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	syntaxin-41-like
Location	scaffold404: 1473319 .. 1475004 (-)
RNA-Seq Expression	MS025089
Synteny	MS025089

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTCGAGGAATCAGACTTTGCTTTTTAGGAAATACAGGGACGCCTTGAGAAGTGTGAGGGCTCCTACCAACTCTTCGCCAGTTTCGGCATCGCCACCGACTAGTTCTAGCACTGGTGGTCCGATGATTGAATTGGTGAGCTCGTCGTTGCTGAATCCGAATTAGACTTATGCTCCCTTGAGTATTGAGGATCCGGGTAATTCAAAATCTATCTCTGTCTATATACATATGTGCATGATGTGTGCTGGTATATGTGAATTTGATCCAAATCTCTTTTTTTAGTCTAAATCTTGAGAATTTAATGATGGAAAGTGAAATGTGGTTTGTGATGGTTTCGGTGTGGTAAGATCTTGTCTAAATTGAGATTTAGTGCCAGTTAGCAGTTACCACTTTCATGGAAGAAGAGGATGAGAAAATTGGATATGTAGGTGATTAACGTTTGGAGTAGAGAGATGCGGAATTGGGTTGGTTCAAGAAGTGTTAAATTGCCATTATAGAATCAAAGGACGCATTTTGCACAATTATGGTGGAATAACCGAGGGAACTAAGGGACCATTAAGTATAGAAGGAATGCATAGAAATTTGAAGAATGTCTGGTTTCTCTTTTGGTTATTATTACAAATTTCATCTCTAGCTGTGTATGTTTAATGCTTGAAATTTTAGAAGTTGGCATTATGTCTTGAGATTATGACTGGAATTATGTTGTGTCTATGCACAAATGTTGATTGGTTTAGCATGAGACGATTGACAAATAATCAAAAGGAAGTGAACATGTGGACAAAAATAGAAGGATACAATTAGTTAACAGTGTTATGGCAGAACTTGAATGAATTATGAGTTAAAAATTCAAAGCAGCAATTGAAATCTTGTAAAGTTTGTATATATAAATAGACACATACATCTAAGTTCTAAGTTCAATGACTAAACTTGTAATTGTTATTTTGCTAAAATCCCACCCATATCATTATGTTATGGGCTTATGAGTTATTTCTTTGTTTATTAATGCAGTAAGGGTGCTCATACCGTGGGTCTGCCTCCAGCTTGGGTTGAAGTATCCGAAGAAATAGCTGTAAATGTGCAATGTGCATGAACGAAGATGATGGAGTTAGCTAAAGTTCATGCGAAGGCTTTAATGCCTTCATTAGTTTCTTCTCACTAGTTCCTCTGTTCTGTCTCATTTGCCTTGATGGTTTTTCCACTGTCGGTTTTTCAGGTGACCCTTATGTTCTTTTATGACTTCCCCTCAGTCATTCCCATACCAATACCTTTTAAACCTTCCATTCCACTTGATGAGAAACTTCAAGGCATGAACACCTTCTTCACTTTTCCATAGCTTGCATTCTTTTTATTTGCCAATTTGATTACAAATTTTCGTGGCTTTGATGACAGCTTGATATACACGACGACAAAGCTACTCATGAAGGTATGTTTAGATTCAACGTATGTATTTTTGAATTGTCTGGATTTTATTGGGTTATCAAGGATATTCAGCAGCACCTTGGCCTGTGAAAAGTTGTGAGATTAAGATGGAGGATTATAATGGGAATTCGCAGGACTTTTGTGATTTTTATTTTTCATGCAGAGAATGCAGTAGTGGAAAGTAAAGTTTCGGCTCTTAAGCAAACTCCAAAGGCTGCTAAAACTTCACAAAACGCCAAGAAGAGGAGGAAGAATCTCATCTGA

mRNA sequence

ATGGTGTCGAGGAATCAGACTTTGCTTTTTAGGAAATACAGGGACGCCTTGAGAAGTGTGAGGGCTCCTACCAACTCTTCGCCAGTTTCGGCATCGCCACCGACTAGTTCTAGCACTGGTGGTCCGATGATTGAATTGCTTGATATACACGACGACAAAGCTACTCATGAAGAGAATGCAGTAGTGGAAAGTAAAGTTTCGGCTCTTAAGCAAACTCCAAAGGCTGCTAAAACTTCACAAAACGCCAAGAAGAGGAGGAAGAATCTCATCTGA

Coding sequence (CDS)

ATGGTGTCGAGGAATCAGACTTTGCTTTTTAGGAAATACAGGGACGCCTTGAGAAGTGTGAGGGCTCCTACCAACTCTTCGCCAGTTTCGGCATCGCCACCGACTAGTTCTAGCACTGGTGGTCCGATGATTGAATTGCTTGATATACACGACGACAAAGCTACTCATGAAGAGAATGCAGTAGTGGAAAGTAAAGTTTCGGCTCTTAAGCAAACTCCAAAGGCTGCTAAAACTTCACAAAACGCCAAGAAGAGGAGGAAGAATCTCATCTGA

Protein sequence

MVSRNQTLLFRKYRDALRSVRAPTNSSPVSASPPTSSSTGGPMIELLDIHDDKATHEENAVVESKVSALKQTPKAAKTSQNAKKRRKNLI

Homology

[Close]

BLAST of MS025089 vs. NCBI nr
Match: XP_022156434.1 (syntaxin-41-like [Momordica charantia])

HSP 1 Score: 76.6 bits (187), Expect = 1.2e-10
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 1  MVSRNQTLLFRKYRDALRSVRAPTNSSPVSASPPTSSSTGGPMIELL 48
          M SRN+TLLFRKYRDALRSVRAPT+SSPVSASP TSS  GGP+IEL+
Sbjct: 1  MASRNRTLLFRKYRDALRSVRAPTSSSPVSASPSTSSGAGGPVIELV 47

[Close]

BLAST of MS025089 vs. NCBI nr
Match: XP_038889829.1 (syntaxin-43 [Benincasa hispida])

HSP 1 Score: 74.7 bits (182), Expect = 4.5e-10
Identity = 37/47 (78.72%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 1  MVSRNQTLLFRKYRDALRSVRAPTNSSPVSASPPTSSSTGGPMIELL 48
          M SRN+TL+FRKYRDALRSVR PT+SSPVSASP TSS+ GGP+IEL+
Sbjct: 1  MASRNRTLIFRKYRDALRSVRVPTSSSPVSASPTTSSAAGGPVIELV 47

[Close]

BLAST of MS025089 vs. NCBI nr
Match: KAG7030133.1 (Syntaxin-43, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 74.3 bits (181), Expect = 5.9e-10
Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 1  MVSRNQTLLFRKYRDALRSVRAPTNSSPVSASPPTSSSTGGPMIELL 48
          M SRN+TL+FRKYRDALRSVR PT SSP SASP TSS TGGP+IEL+
Sbjct: 1  MASRNRTLIFRKYRDALRSVRVPTGSSPASASPSTSSGTGGPVIELV 47

[Close]

BLAST of MS025089 vs. NCBI nr
Match: XP_023522691.1 (syntaxin-41-like, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 74.3 bits (181), Expect = 5.9e-10
Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 1  MVSRNQTLLFRKYRDALRSVRAPTNSSPVSASPPTSSSTGGPMIELL 48
          M SRN+TL+FRKYRDALRSVR PT SSP SASP TSS TGGP+IEL+
Sbjct: 1  MASRNRTLIFRKYRDALRSVRVPTGSSPASASPSTSSGTGGPVIELV 47

[Close]

BLAST of MS025089 vs. NCBI nr
Match: KAG6599198.1 (Syntaxin-43, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 74.3 bits (181), Expect = 5.9e-10
Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 1  MVSRNQTLLFRKYRDALRSVRAPTNSSPVSASPPTSSSTGGPMIELL 48
          M SRN+TL+FRKYRDALRSVR PT SSP SASP TSS TGGP+IEL+
Sbjct: 1  MASRNRTLIFRKYRDALRSVRVPTGSSPASASPSTSSGTGGPVIELV 47

[Close]

BLAST of MS025089 vs. ExPASy Swiss-Prot
Match: O65359 (Syntaxin-41 OS=Arabidopsis thaliana OX=3702 GN=SYP41 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.3e-04
Identity = 26/46 (56.52%), Postives = 35/46 (76.09%), Query Frame = 0


Query: 1  MVSRNQTLLFRKYRDALRSVRAPTNSSPVSASPPTSSSTGGPMIEL 47
          M +RN+TLLFRKYR++LRSVRAP +SS ++    T S   GP+IE+
Sbjct: 1  MATRNRTLLFRKYRNSLRSVRAPLSSSSLTG---TRSGGVGPVIEM 43

[Close]

BLAST of MS025089 vs. ExPASy Swiss-Prot
Match: Q9SUJ1 (Syntaxin-43 OS=Arabidopsis thaliana OX=3702 GN=SYP43 PE=2 SV=2)

HSP 1 Score: 47.0 bits (110), Expect = 1.3e-04
Identity = 28/51 (54.90%), Postives = 35/51 (68.63%), Query Frame = 0


Query: 1  MVSRNQTLLFRKYRDALRSVRAPTNSSPVSASPPTSSSTG-----GPMIEL 47
          M +RN+TLLFRKYR++LRSVRAP  SS  S     +S TG     GP+IE+
Sbjct: 1  MATRNRTLLFRKYRNSLRSVRAPMGSSSSSTLTEHNSLTGAKSGLGPVIEM 51

[Close]

BLAST of MS025089 vs. ExPASy TrEMBL
Match: A0A6J1DTG3 (syntaxin-41-like OS=Momordica charantia OX=3673 GN=LOC111023326 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.8e-11
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 1  MVSRNQTLLFRKYRDALRSVRAPTNSSPVSASPPTSSSTGGPMIELL 48
          M SRN+TLLFRKYRDALRSVRAPT+SSPVSASP TSS  GGP+IEL+
Sbjct: 1  MASRNRTLLFRKYRDALRSVRAPTSSSPVSASPSTSSGAGGPVIELV 47

[Close]

BLAST of MS025089 vs. ExPASy TrEMBL
Match: A0A6J1KJM9 (syntaxin-43-like OS=Cucurbita maxima OX=3661 GN=LOC111493794 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.9e-10
Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 1  MVSRNQTLLFRKYRDALRSVRAPTNSSPVSASPPTSSSTGGPMIELL 48
          M SRN+TL+FRKYRDALRSVR PT SSP SASP TSS TGGP+IEL+
Sbjct: 1  MASRNRTLIFRKYRDALRSVRVPTGSSPASASPSTSSGTGGPVIELV 47

[Close]

BLAST of MS025089 vs. ExPASy TrEMBL
Match: A0A6J1G576 (syntaxin-43-like OS=Cucurbita moschata OX=3662 GN=LOC111450791 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.9e-10
Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 1  MVSRNQTLLFRKYRDALRSVRAPTNSSPVSASPPTSSSTGGPMIELL 48
          M SRN+TL+FRKYRDALRSVR PT SSP SASP TSS TGGP+IEL+
Sbjct: 1  MASRNRTLIFRKYRDALRSVRVPTGSSPASASPSTSSGTGGPVIELV 47

[Close]

BLAST of MS025089 vs. ExPASy TrEMBL
Match: A0A6J1HMS0 (syntaxin-41-like OS=Cucurbita maxima OX=3661 GN=LOC111465600 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.9e-09
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 1  MVSRNQTLLFRKYRDALRSVRAPTNSSPVSASPPTSSSTGGPMIELL 48
          M SRN+TL+FRKYRDALRSVRAPT+SSP   SP TSSS GGP+IEL+
Sbjct: 1  MASRNRTLVFRKYRDALRSVRAPTSSSPACPSPSTSSSAGGPVIELV 47

[Close]

BLAST of MS025089 vs. ExPASy TrEMBL
Match: A0A6J1FBL2 (syntaxin-41-like OS=Cucurbita moschata OX=3662 GN=LOC111443945 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 5.4e-09
Identity = 35/47 (74.47%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 1  MVSRNQTLLFRKYRDALRSVRAPTNSSPVSASPPTSSSTGGPMIELL 48
          M SRN+TL+FRKYRDALRSVRAPT+SSP   SP TSS  GGP+IEL+
Sbjct: 1  MASRNRTLVFRKYRDALRSVRAPTSSSPACPSPSTSSGAGGPVIELV 47

[Close]

BLAST of MS025089 vs. TAIR 10
Match: AT3G05710.1 (syntaxin of plants 43 )

HSP 1 Score: 47.0 bits (110), Expect = 9.4e-06
Identity = 28/51 (54.90%), Postives = 35/51 (68.63%), Query Frame = 0


Query: 1  MVSRNQTLLFRKYRDALRSVRAPTNSSPVSASPPTSSSTG-----GPMIEL 47
          M +RN+TLLFRKYR++LRSVRAP  SS  S     +S TG     GP+IE+
Sbjct: 1  MATRNRTLLFRKYRNSLRSVRAPMGSSSSSTLTEHNSLTGAKSGLGPVIEM 51

[Close]

BLAST of MS025089 vs. TAIR 10
Match: AT3G05710.2 (syntaxin of plants 43 )

HSP 1 Score: 47.0 bits (110), Expect = 9.4e-06
Identity = 28/51 (54.90%), Postives = 35/51 (68.63%), Query Frame = 0


Query: 1  MVSRNQTLLFRKYRDALRSVRAPTNSSPVSASPPTSSSTG-----GPMIEL 47
          M +RN+TLLFRKYR++LRSVRAP  SS  S     +S TG     GP+IE+
Sbjct: 1  MATRNRTLLFRKYRNSLRSVRAPMGSSSSSTLTEHNSLTGAKSGLGPVIEM 51

[Close]

BLAST of MS025089 vs. TAIR 10
Match: AT5G26980.1 (syntaxin of plants 41 )

HSP 1 Score: 47.0 bits (110), Expect = 9.4e-06
Identity = 26/46 (56.52%), Postives = 35/46 (76.09%), Query Frame = 0


Query: 1  MVSRNQTLLFRKYRDALRSVRAPTNSSPVSASPPTSSSTGGPMIEL 47
          M +RN+TLLFRKYR++LRSVRAP +SS ++    T S   GP+IE+
Sbjct: 1  MATRNRTLLFRKYRNSLRSVRAPLSSSSLTG---TRSGGVGPVIEM 43

[Close]

BLAST of MS025089 vs. TAIR 10
Match: AT5G26980.2 (syntaxin of plants 41 )

HSP 1 Score: 47.0 bits (110), Expect = 9.4e-06
Identity = 26/46 (56.52%), Postives = 35/46 (76.09%), Query Frame = 0


Query: 1  MVSRNQTLLFRKYRDALRSVRAPTNSSPVSASPPTSSSTGGPMIEL 47
          M +RN+TLLFRKYR++LRSVRAP +SS ++    T S   GP+IE+
Sbjct: 1  MATRNRTLLFRKYRNSLRSVRAPLSSSSLTG---TRSGGVGPVIEM 43

[Close]

BLAST of MS025089 vs. TAIR 10
Match: AT4G02195.1 (syntaxin of plants 42 )

HSP 1 Score: 41.2 bits (95), Expect = 5.2e-04
Identity = 24/64 (37.50%), Postives = 37/64 (57.81%), Query Frame = 0


Query: 1  MVSRNQTLLFRKYRDALRSVRAPTNSSPVSASPPTSSSTGGPMIELLDIHDDKATHEENA 60
          M +RN+T ++RK+RDA +S RAP + S        S S GGP+IE++     ++ H   A
Sbjct: 1  MATRNRTTVYRKHRDACKSARAPLSLS-------ASDSFGGPVIEMVSGSFSRSNHSSYA 57

Query: 61 VVES 65
           + S
Sbjct: 61 PLNS 57

The following BLAST results are available for this feature:

BLAST of MS025089 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156434.1	1.2e-10	82.98	syntaxin-41-like [Momordica charantia]	[more]
XP_038889829.1	4.5e-10	78.72	syntaxin-43 [Benincasa hispida]	[more]
KAG7030133.1	5.9e-10	78.72	Syntaxin-43, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023522691.1	5.9e-10	78.72	syntaxin-41-like, partial [Cucurbita pepo subsp. pepo]	[more]
KAG6599198.1	5.9e-10	78.72	Syntaxin-43, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of MS025089 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65359	1.3e-04	56.52	Syntaxin-41 OS=Arabidopsis thaliana OX=3702 GN=SYP41 PE=1 SV=1	[more]
Q9SUJ1	1.3e-04	54.90	Syntaxin-43 OS=Arabidopsis thaliana OX=3702 GN=SYP43 PE=2 SV=2	[more]

BLAST of MS025089 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DTG3	5.8e-11	82.98	syntaxin-41-like OS=Momordica charantia OX=3673 GN=LOC111023326 PE=3 SV=1	[more]
A0A6J1KJM9	2.9e-10	78.72	syntaxin-43-like OS=Cucurbita maxima OX=3661 GN=LOC111493794 PE=3 SV=1	[more]
A0A6J1G576	2.9e-10	78.72	syntaxin-43-like OS=Cucurbita moschata OX=3662 GN=LOC111450791 PE=3 SV=1	[more]
A0A6J1HMS0	1.9e-09	76.60	syntaxin-41-like OS=Cucurbita maxima OX=3661 GN=LOC111465600 PE=3 SV=1	[more]
A0A6J1FBL2	5.4e-09	74.47	syntaxin-41-like OS=Cucurbita moschata OX=3662 GN=LOC111443945 PE=3 SV=1	[more]

BLAST of MS025089 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05710.1	9.4e-06	54.90	syntaxin of plants 43	[more]
AT3G05710.2	9.4e-06	54.90	syntaxin of plants 43	[more]
AT5G26980.1	9.4e-06	56.52	syntaxin of plants 41	[more]
AT5G26980.2	9.4e-06	56.52	syntaxin of plants 41	[more]
AT4G02195.1	5.2e-04	37.50	syntaxin of plants 42	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS025089.1	MS025089.1	mRNA