MS025088 (gene) Bitter gourd (TR) v1

Overview
NameMS025088
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold404: 1466289 .. 1466513 (+)
RNA-Seq ExpressionMS025088
SyntenyMS025088
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGATTTCGTTTTCCGTTCCTCAATCTCCGGCACTTTCCCGGACCTCGCCTGGGGAGGCAGCTCCATCAACACACGCCTCGATTGGACGGAGACCTGCATGCTCACATCCTTAGGGCCGCCCTCCCCGCCTTCGACGGAGAAGACGTTCTCTCTCACCCACAATTTCTGCCTCTCTCACGCACGAACATCTTTTTCAGTTCTTCAGAAGTCTTCGCCTAA

mRNA sequence

ATGGCAAGATTTCGTTTTCCGTTCCTCAATCTCCGGCACTTTCCCGGACCTCGCCTGGGGAGGCAGCTCCATCAACACACGCCTCGATTGGACGGAGACCTGCATGCTCACATCCTTAGGGCCGCCCTCCCCGCCTTCGACGGAGAAGACGTTCTCTCTCACCCACAATTTCTGCCTCTCTCACGCACGAACATCTTTTTCAGTTCTTCAGAAGTCTTCGCCTAA

Coding sequence (CDS)

ATGGCAAGATTTCGTTTTCCGTTCCTCAATCTCCGGCACTTTCCCGGACCTCGCCTGGGGAGGCAGCTCCATCAACACACGCCTCGATTGGACGGAGACCTGCATGCTCACATCCTTAGGGCCGCCCTCCCCGCCTTCGACGGAGAAGACGTTCTCTCTCACCCACAATTTCTGCCTCTCTCACGCACGAACATCTTTTTCAGTTCTTCAGAAGTCTTCGCCTAA

Protein sequence

MARFRFPFLNLRHFPGPRLGRQLHQHTPRLDGDLHAHILRAALPAFDGEDVLSHPQFLPLSRTNIFFSSSEVFA
Homology
[Close]
BLAST of MS025088 vs. NCBI nr
Match: XP_022150214.1 (uncharacterized protein LOC111018441 [Momordica charantia])

HSP 1 Score: 58.5 bits (140), Expect = 2.8e-05
Identity = 26/33 (78.79%), Postives = 27/33 (81.82%), Query Frame = 0 

Query: 1  MARFRFPFLNLRHFPGPRLGRQLHQHTPRLDGD 34
          M RFRFPFLNLR  P PRLGR+L QHTPRLD D
Sbjct: 1  MTRFRFPFLNLRRLPEPRLGRRLRQHTPRLDED 33

[Close]
BLAST of MS025088 vs. ExPASy TrEMBL
Match: A0A6J1D9B6 (uncharacterized protein LOC111018441 OS=Momordica charantia OX=3673 GN=LOC111018441 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.3e-05
Identity = 26/33 (78.79%), Postives = 27/33 (81.82%), Query Frame = 0 

Query: 1  MARFRFPFLNLRHFPGPRLGRQLHQHTPRLDGD 34
          M RFRFPFLNLR  P PRLGR+L QHTPRLD D
Sbjct: 1  MTRFRFPFLNLRRLPEPRLGRRLRQHTPRLDED 33

The following BLAST results are available for this feature:
BLAST of MS025088 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022150214.12.8e-0578.79uncharacterized protein LOC111018441 [Momordica charantia][more]
BLAST of MS025088 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS025088 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1D9B61.3e-0578.79uncharacterized protein LOC111018441 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
BLAST of MS025088 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS025088.1MS025088.1mRNA