MS025060 (gene) Bitter gourd (TR) v1

Overview


Name	MS025060
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Transcription factor GTE9 isoform X4
Location	scaffold327: 205185 .. 207549 (+)
RNA-Seq Expression	MS025060
Synteny	MS025060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGATGAAGATGAAGGGCGTTGAGAAAGATGTTTCGTATTTAAGAAGTCTTATTCTATGCGAAAGATTGACTGCTAAACCACCAAAGAAGAAGTTGATCAAGAAAGAGATCTCCATAAAATCTTATGACCGCATTTTCGCATCGGAGACCCTAGACAATGTAAAGCCAAAGATAAGAACGACTAGGGTGAGTTCTTTATTTTGTTCAACATTATTTTAGGTCGAAAAGATAAAGAAATACGGTAATTCTTGAAATATTATTGCGTTTATTAATATATTTAATTTTATACATGTTTAGATGAAGGCAAAACCTCGAGAAGTTTTTTGTGACGATCCGACAACAAAGACTATATCGGTAATTTCTTTATTGTTTTTTTAATATATCAGTTTTTCGAAGCAGTATATCATTTTTATAAAACAATTAGAAAAAAAGACAAATTGTTTTCAAATTATTTATTTAGGTTTTGCGTCCCTTCATTTCACCTCCTTTTGGCGGATGGAAACGGGCCGTTAAAGTCCCGTTCTAGGAACTTTTATTTATTTATTTAAATTTGCCTAGCCGGATTCGATTAATTCCGTCTTTTCTTTTAACCTTTTTCTTTAATATTTTTGTTTCCTCTTTCTTTGTTTGTGATACTTTTTTTATTCTTTTAGTTGAATCTTTTGTTTTTTTTATTATTATTAAACTTTGCTTAAATTTAGTTCATATTATTTATCATTGTTGTTGTATGATCTCATATTTCTTACTTCCTTTATAGTGATGTGATATGTGTTAATATTTTATTGCTTTTTTATATATACAATTCTATATTCATTTTTTTACATTTCAACATCAATCGGTGGATAGAGGTAGCTCATTTACTAATATTTATAAAGTTCTATCTCAAAACTAATTGACCGAGAGTAGTAGCCTGGAAATTGGGTTTCTAACCCATTTTAGAATCCATTCGAATTTTTGACCTCCCTCTAAAAATCTTATTTGTAACCTCTGCCATTCTAATTTTTTACTCATTTTCATTTTTTGTCCGGGTAAAATTACTAAAATATCCTCGTTTTTCGTAAAGCAAAATTCACCCGTATCTTGGTTCCCTCCACCAATTCCCTCACCTTGAACCTCACACACAATTTTTAATTTGAATTTAATATGAAAAAATACTAACTTTTAATTTGAATAATCAATCACAAAAAATCTTACTTTTTAATTTGAAGAATGAATTACGAATGGAAGAAAATCTCAACTTTTTAATCCCAGGTCAATATTGCATAATGTCCAAAATTTAATTAAAAAAGAGAGCCAAAATTGCATAAATGTTCAAGATAATTTTAAAAAATAATAATAACAAGCCAATGAGATGAATAGTCCAAAGTCCCTTCTTTTTTCTATGTTAGGATCCATGTTTTAAATGTCGACGTCGATAGAAATTACGATGGAAATATCAATAAAATGTCGATATCGATAAGATTTCTATAAAAGTTAGAAAAATTTAAAAATCGTAAAAAATATTTAAATTAACAAATAAATATTTTCTCATTTCAAAAATTAGTTAGAAATAATTAATATTAATATATATTAGTGACATTTTGTTTGATATTTTTCATATTTTGTCGATTTTCTTATACTATAATAGAAATGTCAATTCATCCCTCATGTCGATGTCGAATCCATGAAAACATGAATATGTCGATCGAAATACCGACGCGTCGATAGATATTTAAAACCATGGTTACGATAGATTTTATTTCTTTTATTTATATATTCAATTTTGTACATGTTTAGGTGAGTTCTGGGCCAGTGAAACCGCAACTAGTTTCTTGTGCTGATTTGGCAGCAAATATAGTGGTGAGTTCAATTTATTATTATTATTATTATTATTATTTTTATATCCAATTCTGTACATAAATCGAAACCGTGAGAATGTGATTTTTTGGAATAGAAATGTGGAGATTTGGTAGCAAAGATACCACAAAAACCAGCTGAAGCCACAACTCCAACACCAACCTCAATCACAACACCACGGCAGATTAGTACTCCACCCTCACCCAGCACAGCTCCTCGAGTAACAATGCTGAAAGCAAGGTTCGCCGATACGATCTTGAAAGCACAGCGGCAGCTTTGCATCAATGATGTGCCATGTGCTGTGAAGCCGGATGTGATTGAAAAATTAGTTGTTAAGCCATCTACAATTGAAGAACTGAGGCGAGCACTGCGAGAAGTTTTGGAAGAGGTGGAACGGACTGTAGAGGTGGAAGATAGCCATAAATCCCTCGAAGATTTAGAGCGTCTTTGTGGATTTCTCGTACCTTCCTCTGATGGCCTGATTCCTCGACACCATGCGCTTCTATGGTTTATATTTGAAGAATGA

mRNA sequence

ATGAAGATGAAGATGAAGGGCGTTGAGAAAGATGTTTCGTATTTAAGAAGTCTTATTCTATGCGAAAGATTGACTGCTAAACCACCAAAGAAGAAGTTGATCAAGAAAGAGATCTCCATAAAATCTTATGACCGCATTTTCGCATCGGAGACCCTAGACAATGTAAAGCCAAAGATAAGAACGACTAGGGTGAGTTCTGGGCCAGTGAAACCGCAACTAGTTTCTTGTGCTGATTTGGCAGCAAATATAGTGAAATGTGGAGATTTGGTAGCAAAGATACCACAAAAACCAGCTGAAGCCACAACTCCAACACCAACCTCAATCACAACACCACGGCAGATTAGTACTCCACCCTCACCCAGCACAGCTCCTCGAGTAACAATGCTGAAAGCAAGGTTCGCCGATACGATCTTGAAAGCACAGCGGCAGCTTTGCATCAATGATGTGCCATGTGCTGTGAAGCCGGATGTGATTGAAAAATTAGTTGTTAAGCCATCTACAATTGAAGAACTGAGGCGAGCACTGCGAGAAGTTTTGGAAGAGGTGGAACGGACTGTAGAGGTGGAAGATAGCCATAAATCCCTCGAAGATTTAGAGCGTCTTTGTGGATTTCTCGTACCTTCCTCTGATGGCCTGATTCCTCGACACCATGCGCTTCTATGGTTTATATTTGAAGAATGA

Coding sequence (CDS)

ATGAAGATGAAGATGAAGGGCGTTGAGAAAGATGTTTCGTATTTAAGAAGTCTTATTCTATGCGAAAGATTGACTGCTAAACCACCAAAGAAGAAGTTGATCAAGAAAGAGATCTCCATAAAATCTTATGACCGCATTTTCGCATCGGAGACCCTAGACAATGTAAAGCCAAAGATAAGAACGACTAGGGTGAGTTCTGGGCCAGTGAAACCGCAACTAGTTTCTTGTGCTGATTTGGCAGCAAATATAGTGAAATGTGGAGATTTGGTAGCAAAGATACCACAAAAACCAGCTGAAGCCACAACTCCAACACCAACCTCAATCACAACACCACGGCAGATTAGTACTCCACCCTCACCCAGCACAGCTCCTCGAGTAACAATGCTGAAAGCAAGGTTCGCCGATACGATCTTGAAAGCACAGCGGCAGCTTTGCATCAATGATGTGCCATGTGCTGTGAAGCCGGATGTGATTGAAAAATTAGTTGTTAAGCCATCTACAATTGAAGAACTGAGGCGAGCACTGCGAGAAGTTTTGGAAGAGGTGGAACGGACTGTAGAGGTGGAAGATAGCCATAAATCCCTCGAAGATTTAGAGCGTCTTTGTGGATTTCTCGTACCTTCCTCTGATGGCCTGATTCCTCGACACCATGCGCTTCTATGGTTTATATTTGAAGAATGA

Protein sequence

MKMKMKGVEKDVSYLRSLILCERLTAKPPKKKLIKKEISIKSYDRIFASETLDNVKPKIRTTRVSSGPVKPQLVSCADLAANIVKCGDLVAKIPQKPAEATTPTPTSITTPRQISTPPSPSTAPRVTMLKARFADTILKAQRQLCINDVPCAVKPDVIEKLVVKPSTIEELRRALREVLEEVERTVEVEDSHKSLEDLERLCGFLVPSSDGLIPRHHALLWFIFEE

Homology

[Close]

BLAST of MS025060 vs. NCBI nr
Match: KAA0061663.1 (transcription factor GTE9 isoform X4 [Cucumis melo var. makuwa] >TYK21138.1 transcription factor GTE9 isoform X4 [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 9.0e-07
Identity = 58/164 (35.37%), Postives = 82/164 (50.00%), Query Frame = 0


Query: 96  KPAEATTPTPTSITTPRQISTPPSPSTAPRVTMLKARFADTILKAQRQLCIND-VPCAVK 155
           KP +A  PTPT  TTP   +   + +   RV+MLK RFA TILKAQ+QL   + + C V+
Sbjct: 21  KPKKA-KPTPTMGTTP-LTAIRYNDNHNNRVSMLKRRFAGTILKAQQQLSERERIMCNVE 80

Query: 156 P----------------------------------------DVIEKLVVK-------PST 212
                                                    + + K+V +       PS+
Sbjct: 81  KKQPPTLASTPTTMMDERREATREALWRKKEPTTTPTKNSNEELRKVVQRAFSPTPIPSS 140

[Close]

BLAST of MS025060 vs. NCBI nr
Match: KAG6571342.1 (hypothetical protein SDJN03_30257, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 59.7 bits (143), Expect = 3.8e-05
Identity = 55/158 (34.81%), Postives = 71/158 (44.94%), Query Frame = 0


Query: 91  AKIPQKPAEATTPTPTSITTPRQISTPPSPSTAP----RVTMLKARFADTILKAQRQLCI 150
           AK P      T+ T      P  I   P+PS++     R  +LK +FA TI KAQR L  
Sbjct: 20  AKKPSLSLPPTSLTKAKTLAPTTIVPRPTPSSSSGEDNRAKILKKKFAGTIWKAQRHLSK 79

Query: 151 N---------------------------DVPCAVKPDVIEKLVVKPSTIEELRRALREVL 210
           N                            +  +++ D I  L V+    EE+R A R  L
Sbjct: 80  NRKKVRSEKRREADGKGSEAVDDRRVVPPLAPSLEDDEITMLKVRR---EEMRAAARRDL 139

Query: 211 EEVERTVEVEDSHKSLEDLERLCGFLVPSSDGLIPRHH 218
           EEVER V V+DSH SL + ERLCGF +P   G + R H
Sbjct: 140 EEVERRVVVDDSHASLREYERLCGFPIPYVGGFLNRMH 174

[Close]

BLAST of MS025060 vs. ExPASy TrEMBL
Match: A0A5D3DC97 (Transcription factor GTE9 isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold75860G00060 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.3e-07
Identity = 58/164 (35.37%), Postives = 82/164 (50.00%), Query Frame = 0


Query: 96  KPAEATTPTPTSITTPRQISTPPSPSTAPRVTMLKARFADTILKAQRQLCIND-VPCAVK 155
           KP +A  PTPT  TTP   +   + +   RV+MLK RFA TILKAQ+QL   + + C V+
Sbjct: 21  KPKKA-KPTPTMGTTP-LTAIRYNDNHNNRVSMLKRRFAGTILKAQQQLSERERIMCNVE 80

Query: 156 P----------------------------------------DVIEKLVVK-------PST 212
                                                    + + K+V +       PS+
Sbjct: 81  KKQPPTLASTPTTMMDERREATREALWRKKEPTTTPTKNSNEELRKVVQRAFSPTPIPSS 140

[Close]

BLAST of MS025060 vs. ExPASy TrEMBL
Match: A0A0A0KGL2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G421730 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.3e-06
Identity = 61/181 (33.70%), Postives = 85/181 (46.96%), Query Frame = 0


Query: 90  VAKIPQKPAEATTPTPTSITTPRQISTPPSPSTAPRVTMLKARFADTILKAQRQLC---- 149
           V  I ++P +A  PTPT  TTP  ++         RV+MLK+RFA TILKAQ+QL     
Sbjct: 22  VTTIMKQPKKA-KPTPTMETTP--LTAITFDDKHYRVSMLKSRFASTILKAQQQLSESKR 81

Query: 150 -------------------------------------------------INDVPC--AVK 209
                                                             N+ P    V+
Sbjct: 82  KVCNVEKKPPTPALTPMEERREATREASWRNKKPTATATATATTTPTTNSNEEPTREVVQ 141

Query: 210 PDVIEKLVVKPSTI----EELRRALREVLEEVERTVEVEDSHKSLEDLERLCGFLVPSSD 212
             +  K+ + P+ I    EE+RRA R+ LE++ER+V+VEDSHKS++DLERLCG+ +PS  
Sbjct: 142 RALWRKMKLPPTPILTSTEEIRRAARQALEDLERSVDVEDSHKSVKDLERLCGWPIPSVG 199

The following BLAST results are available for this feature:

BLAST of MS025060 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0061663.1	9.0e-07	35.37	transcription factor GTE9 isoform X4 [Cucumis melo var. makuwa] >TYK21138.1 tran...	[more]
KAG6571342.1	3.8e-05	34.81	hypothetical protein SDJN03_30257, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of MS025060 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS025060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DC97	4.3e-07	35.37	Transcription factor GTE9 isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A0A0KGL2	1.3e-06	33.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G421730 PE=4 SV=1	[more]

BLAST of MS025060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 168..188
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS025060.1	MS025060.1	mRNA