MS024621 (gene) Bitter gourd (TR) v1

Overview
NameMS024621
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold1597: 658060 .. 658329 (-)
RNA-Seq ExpressionMS024621
SyntenyMS024621
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATCCATCAGATTTTTGCAGCTCATTGCCTGTGTATTATTGTTACTCTTTCATGGCTGGTTCCTTGTCGGCGGCGGCGGCCAGAGCGACAGGAAAGTTTCGATCTCCGGGAAGGGGGACGACATGTCGTATTTACACCGCCACCGGGTTGCCGCCGGAGACCCGTGGTGGCCGACAAGAACCGAGATCGTCGGTCGACGGTACGGTTACGATTACGAAACTGACAAACACATCGTTCCGAGTGGTCCAAATCCTCTGCATCACTAA

mRNA sequence

ATGAAATCCATCAGATTTTTGCAGCTCATTGCCTGTGTATTATTGTTACTCTTTCATGGCTGGTTCCTTGTCGGCGGCGGCGGCCAGAGCGACAGGAAAGTTTCGATCTCCGGGAAGGGGGACGACATGTCGTATTTACACCGCCACCGGGTTGCCGCCGGAGACCCGTGGTGGCCGACAAGAACCGAGATCGTCGGTCGACGGTACGGTTACGATTACGAAACTGACAAACACATCGTTCCGAGTGGTCCAAATCCTCTGCATCACTAA

Coding sequence (CDS)

ATGAAATCCATCAGATTTTTGCAGCTCATTGCCTGTGTATTATTGTTACTCTTTCATGGCTGGTTCCTTGTCGGCGGCGGCGGCCAGAGCGACAGGAAAGTTTCGATCTCCGGGAAGGGGGACGACATGTCGTATTTACACCGCCACCGGGTTGCCGCCGGAGACCCGTGGTGGCCGACAAGAACCGAGATCGTCGGTCGACGGTACGGTTACGATTACGAAACTGACAAACACATCGTTCCGAGTGGTCCAAATCCTCTGCATCACTAA

Protein sequence

MKSIRFLQLIACVLLLLFHGWFLVGGGGQSDRKVSISGKGDDMSYLHRHRVAAGDPWWPTRTEIVGRRYGYDYETDKHIVPSGPNPLHH
Homology
[Close]
BLAST of MS024621 vs. NCBI nr
Match: KYP55648.1 (hypothetical protein KK1_001870 [Cajanus cajan])

HSP 1 Score: 56.2 bits (134), Expect = 1.6e-04
Identity = 40/109 (36.70%), Postives = 53/109 (48.62%), Query Frame = 0 

Query: 4   IRFLQLIACVL-----LLLFHGWF---------LVGGGGQSDRKVSISGKGDDMS-YLHR 63
           IRF  L++ +L      LLFHGWF         L+      +RK+  +G G D + +LHR
Sbjct: 5   IRFQHLLSFILWLFLFSLLFHGWFAFKSNNHNALISNNMSPNRKILATGPGFDFTPFLHR 64

Query: 64  HRVAAGDPW--------WPTRTEIVGRRYGYDYETDKHIVPSGPNPLHH 90
           HR     P          P +TEI  R     Y  +K +VP+GPNPLHH
Sbjct: 65  HRHHHHHPRHHHRSHMPQPNQTEIDPR-----YGVEKRLVPTGPNPLHH 108

[Close]
BLAST of MS024621 vs. ExPASy TrEMBL
Match: A0A151SLI2 (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_001870 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 8.0e-05
Identity = 40/109 (36.70%), Postives = 53/109 (48.62%), Query Frame = 0 

Query: 4   IRFLQLIACVL-----LLLFHGWF---------LVGGGGQSDRKVSISGKGDDMS-YLHR 63
           IRF  L++ +L      LLFHGWF         L+      +RK+  +G G D + +LHR
Sbjct: 5   IRFQHLLSFILWLFLFSLLFHGWFAFKSNNHNALISNNMSPNRKILATGPGFDFTPFLHR 64

Query: 64  HRVAAGDPW--------WPTRTEIVGRRYGYDYETDKHIVPSGPNPLHH 90
           HR     P          P +TEI  R     Y  +K +VP+GPNPLHH
Sbjct: 65  HRHHHHHPRHHHRSHMPQPNQTEIDPR-----YGVEKRLVPTGPNPLHH 108

The following BLAST results are available for this feature:
BLAST of MS024621 vs. NCBI nr
Match NameE-valueIdentityDescription
KYP55648.11.6e-0436.70hypothetical protein KK1_001870 [Cajanus cajan][more]
BLAST of MS024621 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS024621 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A151SLI28.0e-0536.70Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_001870 PE=3 SV=1[more]
BLAST of MS024621 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS024621.1MS024621.1mRNA