MS024523 (gene) Bitter gourd (TR) v1

Overview


Name	MS024523
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold234: 2444132 .. 2444731 (+)
RNA-Seq Expression	MS024523
Synteny	MS024523

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATACTCTGGTTTATGAGAAGATTATCAAGGGTCAAGATCGAACTCTTATATCGCTGGGTGTATGTGTTGCATCATTGGCCTACTGCTTGGAAACTGAAATCCCTCCAAATCATATATTCCTGGTTACTCTTGGCTTTGCAGCACTTCACATGTTTGGCATTTTTACATTCACTCAACAATGGTTCTCCAACTTCTTGCAGAATTGGGGGAGTTTAGTTTTTCCTTTGGTAGGTGTTTTGAAGGCTTTTGGAAATGGTTATGTTATGTATTACGTAATGACACATAAGGAACATGCCAATTGGAGATTAATTGTTTTTGTGTTGTCATATGCAACTTTTCATTTCCTCTTGACGATTAACGAGATTGGAGGGAGGGATTTTGGTGTAACAAGGGGTTTTCTTGCTGCTGCTTTCACCCTTGCCATGTTCATACAGCAACAGAAAACATTTGGAGTAGCCATAGTTCTAGTTGTATCAACAACATTAGTTTTCTTCAAAGAATGTCACATACAGAGGATGACTTTACAATGCAAAGCGACAACCGAGATGCCCACCTCCAAAACCAACGTGAGAGCCGATGGTGGAACTTATGGATGA

mRNA sequence

ATGGATACTCTGGTTTATGAGAAGATTATCAAGGGTCAAGATCGAACTCTTATATCGCTGGGTGTATGTGTTGCATCATTGGCCTACTGCTTGGAAACTGAAATCCCTCCAAATCATATATTCCTGGTTACTCTTGGCTTTGCAGCACTTCACATGTTTGGCATTTTTACATTCACTCAACAATGGTTCTCCAACTTCTTGCAGAATTGGGGGAGTTTAGTTTTTCCTTTGGTAGGTGTTTTGAAGGCTTTTGGAAATGGTTATGTTATGTATTACGTAATGACACATAAGGAACATGCCAATTGGAGATTAATTGTTTTTGTGTTGTCATATGCAACTTTTCATTTCCTCTTGACGATTAACGAGATTGGAGGGAGGGATTTTGGTGTAACAAGGGGTTTTCTTGCTGCTGCTTTCACCCTTGCCATGTTCATACAGCAACAGAAAACATTTGGAGTAGCCATAGTTCTAGTTGTATCAACAACATTAGTTTTCTTCAAAGAATGTCACATACAGAGGATGACTTTACAATGCAAAGCGACAACCGAGATGCCCACCTCCAAAACCAACGTGAGAGCCGATGGTGGAACTTATGGATGA

Coding sequence (CDS)

ATGGATACTCTGGTTTATGAGAAGATTATCAAGGGTCAAGATCGAACTCTTATATCGCTGGGTGTATGTGTTGCATCATTGGCCTACTGCTTGGAAACTGAAATCCCTCCAAATCATATATTCCTGGTTACTCTTGGCTTTGCAGCACTTCACATGTTTGGCATTTTTACATTCACTCAACAATGGTTCTCCAACTTCTTGCAGAATTGGGGGAGTTTAGTTTTTCCTTTGGTAGGTGTTTTGAAGGCTTTTGGAAATGGTTATGTTATGTATTACGTAATGACACATAAGGAACATGCCAATTGGAGATTAATTGTTTTTGTGTTGTCATATGCAACTTTTCATTTCCTCTTGACGATTAACGAGATTGGAGGGAGGGATTTTGGTGTAACAAGGGGTTTTCTTGCTGCTGCTTTCACCCTTGCCATGTTCATACAGCAACAGAAAACATTTGGAGTAGCCATAGTTCTAGTTGTATCAACAACATTAGTTTTCTTCAAAGAATGTCACATACAGAGGATGACTTTACAATGCAAAGCGACAACCGAGATGCCCACCTCCAAAACCAACGTGAGAGCCGATGGTGGAACTTATGGATGA

Protein sequence

MDTLVYEKIIKGQDRTLISLGVCVASLAYCLETEIPPNHIFLVTLGFAALHMFGIFTFTQQWFSNFLQNWGSLVFPLVGVLKAFGNGYVMYYVMTHKEHANWRLIVFVLSYATFHFLLTINEIGGRDFGVTRGFLAAAFTLAMFIQQQKTFGVAIVLVVSTTLVFFKECHIQRMTLQCKATTEMPTSKTNVRADGGTYG

Homology

[Close]

BLAST of MS024523 vs. NCBI nr
Match: XP_022134095.1 (uncharacterized protein LOC111006450 [Momordica charantia])

HSP 1 Score: 393.7 bits (1010), Expect = 9.7e-106
Identity = 195/199 (97.99%), Postives = 196/199 (98.49%), Query Frame = 0


Query: 1   MDTLVYEKIIKGQDRTLISLGVCVASLAYCLETEIPPNHIFLVTLGFAALHMFGIFTFTQ 60
           MDTLVYEKIIKGQDRTLISLGVCVASLAYCLETEIPPNHIFLVTLGFAALHMFGIF FTQ
Sbjct: 13  MDTLVYEKIIKGQDRTLISLGVCVASLAYCLETEIPPNHIFLVTLGFAALHMFGIFIFTQ 72

Query: 61  QWFSNFLQNWGSLVFPLVGVLKAFGNGYVMYYVMTHKEHANWRLIVFVLSYATFHFLLTI 120
           QWFSNFLQNWGSLVFPLVGVLKAFGNGYVMYYVM HKEHANWRL+VFVLSYATFHFLL I
Sbjct: 73  QWFSNFLQNWGSLVFPLVGVLKAFGNGYVMYYVMAHKEHANWRLLVFVLSYATFHFLLMI 132

Query: 121 NEIGGRDFGVTRGFLAAAFTLAMFIQQQKTFGVAIVLVVSTTLVFFKECHIQRMTLQCKA 180
           NEIGGRDFGVTRGFLAAAFTLAMFIQQQKTFGVAIVLVVSTTLVFFKECHIQRMTLQCKA
Sbjct: 133 NEIGGRDFGVTRGFLAAAFTLAMFIQQQKTFGVAIVLVVSTTLVFFKECHIQRMTLQCKA 192

Query: 181 TTEMPTSKTNVRADGGTYG 200
           TTEMPTSKTNVRADGGTYG
Sbjct: 193 TTEMPTSKTNVRADGGTYG 211

[Close]

BLAST of MS024523 vs. ExPASy TrEMBL
Match: A0A6J1BX40 (uncharacterized protein LOC111006450 OS=Momordica charantia OX=3673 GN=LOC111006450 PE=4 SV=1)

HSP 1 Score: 393.7 bits (1010), Expect = 4.7e-106
Identity = 195/199 (97.99%), Postives = 196/199 (98.49%), Query Frame = 0


Query: 1   MDTLVYEKIIKGQDRTLISLGVCVASLAYCLETEIPPNHIFLVTLGFAALHMFGIFTFTQ 60
           MDTLVYEKIIKGQDRTLISLGVCVASLAYCLETEIPPNHIFLVTLGFAALHMFGIF FTQ
Sbjct: 13  MDTLVYEKIIKGQDRTLISLGVCVASLAYCLETEIPPNHIFLVTLGFAALHMFGIFIFTQ 72

Query: 61  QWFSNFLQNWGSLVFPLVGVLKAFGNGYVMYYVMTHKEHANWRLIVFVLSYATFHFLLTI 120
           QWFSNFLQNWGSLVFPLVGVLKAFGNGYVMYYVM HKEHANWRL+VFVLSYATFHFLL I
Sbjct: 73  QWFSNFLQNWGSLVFPLVGVLKAFGNGYVMYYVMAHKEHANWRLLVFVLSYATFHFLLMI 132

Query: 121 NEIGGRDFGVTRGFLAAAFTLAMFIQQQKTFGVAIVLVVSTTLVFFKECHIQRMTLQCKA 180
           NEIGGRDFGVTRGFLAAAFTLAMFIQQQKTFGVAIVLVVSTTLVFFKECHIQRMTLQCKA
Sbjct: 133 NEIGGRDFGVTRGFLAAAFTLAMFIQQQKTFGVAIVLVVSTTLVFFKECHIQRMTLQCKA 192

Query: 181 TTEMPTSKTNVRADGGTYG 200
           TTEMPTSKTNVRADGGTYG
Sbjct: 193 TTEMPTSKTNVRADGGTYG 211

The following BLAST results are available for this feature:

BLAST of MS024523 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134095.1	9.7e-106	97.99	uncharacterized protein LOC111006450 [Momordica charantia]	[more]

BLAST of MS024523 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS024523 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BX40	4.7e-106	97.99	uncharacterized protein LOC111006450 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]

BLAST of MS024523 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS024523.1	MS024523.1	mRNA