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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGAGCCTCTCATGGCTTTCACAAGCCGCGATTTCTTCCTCAGCAGCTTCCTGAGGCTAGGGATTTTGAGCTTCTTCAGCCTCCTCCTAATCGAAGCCCTTCCGACAATTCCTAACCTGATCCCTGATCGTCGCCTGGATCTTCCGAACGACTCCTCAAATTCGTCGCTGTATCTCAGCCTCCGGTACCGGAATTTGCCTGCGGACGCGGTTTCGGACTCCGCCATGGCGGTTTTAGAGAGAGAAATCGATCGGCGTGCTCTGAAGTAG mRNA sequence ATGGAGCCTCTCATGGCTTTCACAAGCCGCGATTTCTTCCTCAGCAGCTTCCTGAGGCTAGGGATTTTGAGCTTCTTCAGCCTCCTCCTAATCGAAGCCCTTCCGACAATTCCTAACCTGATCCCTGATCGTCGCCTGGATCTTCCGAACGACTCCTCAAATTCGTCGCTGTATCTCAGCCTCCGGTACCGGAATTTGCCTGCGGACGCGGTTTCGGACTCCGCCATGGCGGTTTTAGAGAGAGAAATCGATCGGCGTGCTCTGAAGTAG Coding sequence (CDS) ATGGAGCCTCTCATGGCTTTCACAAGCCGCGATTTCTTCCTCAGCAGCTTCCTGAGGCTAGGGATTTTGAGCTTCTTCAGCCTCCTCCTAATCGAAGCCCTTCCGACAATTCCTAACCTGATCCCTGATCGTCGCCTGGATCTTCCGAACGACTCCTCAAATTCGTCGCTGTATCTCAGCCTCCGGTACCGGAATTTGCCTGCGGACGCGGTTTCGGACTCCGCCATGGCGGTTTTAGAGAGAGAAATCGATCGGCGTGCTCTGAAGTAG Protein sequence MEPLMAFTSRDFFLSSFLRLGILSFFSLLLIEALPTIPNLIPDRRLDLPNDSSNSSLYLSLRYRNLPADAVSDSAMAVLEREIDRRALK
Homology
BLAST of MS024490 vs. NCBI nr
Match: KAG6578680.1 (hypothetical protein SDJN03_23128, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 80.5 bits (197), Expect = 8.1e-12 Identity = 54/82 (65.85%), Postives = 59/82 (71.95%), Query Frame = 0 Query: 1 MEPLMAFTSRDFFLSSFLRLGILSFFSLLLIEALPTI--PNLIPDRRLDLPNDSSNSSLY 60 MEP MAFTSRD FL SF RLGILSFF+LL IEAL + PNL+ LDL S+SSL Sbjct: 1 MEPPMAFTSRD-FLKSFRRLGILSFFNLLPIEALRILKPPNLLCSPSLDLAIADSDSSLC 60
Query: 61 LSLRYRNLPADAVSDSAMAVLE 81 SLRYRNL ADA+S SAM LE Sbjct: 61 RSLRYRNLAADAISRSAMKDLE 81
BLAST of MS024490 vs. NCBI nr
Match: KAG6602403.1 (E3 ubiquitin-protein ligase RGLG2, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 79.3 bits (194), Expect = 1.8e-11 Identity = 55/85 (64.71%), Postives = 59/85 (69.41%), Query Frame = 0 Query: 5 MAFTSRDFFLSSFLRLGILSFFSLLLIEA---------LPT--IPNLIPDRRLDLPNDSS 64 MA TSRDF L+SFLRLG LSFF+LL IEA LPT + L+ RLDLPN SS Sbjct: 1 MAVTSRDFLLNSFLRLGTLSFFNLLPIEALLILNHRFDLPTNLLLLLLASPRLDLPNASS 60
Query: 65 NSSLYLSLRYRNLPADA-VSDSAMA 78 NSSLYLSLRYRNLP A VS S MA Sbjct: 61 NSSLYLSLRYRNLPGGAVVSRSGMA 85
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG6578680.1 | 8.1e-12 | 65.85 | hypothetical protein SDJN03_23128, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG6602403.1 | 1.8e-11 | 64.71 | E3 ubiquitin-protein ligase RGLG2, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
Relationships
The following mRNA feature(s) are a part of this gene:
Feature Name | Unique Name | Type |
MS024490.1 | MS024490.1 | mRNA |
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