MS024466 (gene) Bitter gourd (TR) v1

Overview
NameMS024466
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPentatricopeptide repeat-containing protein
Locationscaffold359: 349021 .. 352354 (-)
RNA-Seq ExpressionMS024466
SyntenyMS024466
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAATTGCACCACTTTCTCTGTCTTCTCTGAAGAATTTAGTGTTTTCTGATCCAAAACTCAAACCATTAAAATGTTTCTTCTTCGCCGCAAACTACGGCGCAGGTCCGGCGGCTCCTTGTGCCTTCTCAGAATCGGATACGGCGGAAGGCCGAGAGTGGAACGCCGCCGTCGCCGCCACCCCTTTCAACGGCGTCCTCCAAGATGAAGACCTTCTCCGCAAGACCCACATTTCTCCTCAAACTTCCACTCCTTCTACTGGGCTGTACGTTCTGGACCTCATCAACCATGGTTCTTTAGAACCCGACCGAACCCTTTACAGTAAAATGCTGAACAAATGCACCCATTTGCGCAAACTCAAGCAGGGCAGAGTCATTCACGCCCACATCCAGGGTTCTAGTTTCGAGAGTGATCTGGTTCTTCAGAATTTCATTCTAAACATGTATGCGAAATGTGGCAGTCTCGAGGAGGCACGGAACGTGTTTGATAAAATGCCTACGAGAGATATGGTTAGTTGGACTGTGATGATTAGTGGCTTTTCTCAGAGTGGTCTAGCATCTGAGGCTCTGGCTTTGTTCCCGCAGATGCTCCATCAGGGCTTCCAGCCAAACGAGTTTACCTTGTCTAGCCTGTTGAAGGCTTCTGGAACTGGCCCCAGTGATGACCATGGCAGACAACTTCACGCATTTTCTCTCAAATATGGCTACGATGTGAATGTTCATGTGGGAAGTTCACTGCTGGATATGTATGCTAGGTGCGGGCATATGCGAGAAGCCAAAGCGATTTTTGACGGGCTGGCTGGGAAAAACGTGGTGTCTTGGAATGCTCTGATTGCTGGTCATGCCCGGAAGGGCGAAGGGGAGCATGTGATGAGGCTGTTTTGGCAGATGCTAAGACAGGATCTTGAACCTACTCATTTTACATACTCAAGCGTTTTTTCTGCTTGTGCCAGCTCTGGATCTTTGGAGCAGGGGAAATGGGTTCATGCCCATGTTATAAAGTCTGGGGGACAGCCCATTGCATACATTGGAAACACTCTCATCGACATGTATGCCAAATCAGGCAGCATCAAGGATGCAAAGAAGGTTTTCCAGAGGTTGGTTAAACAGGATGTTGTTTCGTGGAACTCGATTATATCCGGATATGCGCAACACGGGTTGGGGGTTGAAGCCTTACAGCTGTTTGAAGAGATGCTGAAGGTCAAAGTTCAACCTAATCAAATTACTTTCCTCTCTGTTCTTACTGCCTGTAGCCATTCCGGGCTTCTAGATGAAGGGCAATATTACTTTGAATTGATGAAGAACTACGAGATAGAACCACAAATTGCACACTATGTGACAGTTGTTGATCTTCTAGGTAGAGCAGGGCGCCTAAATGAAGCCAACAACTTCATAAAGGAAATGCCTGTCGAACCTACCGCAGCTGTCTGGGGAGCCTTGCTTGGTGCTAGCAGGATGCATAAGAATATGGATCTGGGCGTTTATGCTGCCGAACGGATTTTCGAGCTCGACCCTCATGACTCTGGTCCTCATGTATTGTTGTCTAATATTTACGCTTCTGCTGGTAGATTGAATGATGCAGCAAATGTAAGGAAGATGATGAAAGAAAGTGGAGTTAAGAAAGAACCTGCTTGTAGTTGGGTTGAAATTGAGAATGAAGTCCATATGTTTGTGGCAAATGATGATTCACATCCAATGAGAGAGGAAATCCAGAGGATGTGGGAGAAAATTAGTGGGAAGATTAGAGAGATTGGGTATGTGCCAGACACAAGCCATGTGCTTTTCTTCATGGACCAGCAGGATAGAGAAGTAAAGCTACAATATCATAGTGAGAAGCTAGCATTAGCATTTTCAGTGTTGAAAACGCCTCCTGGATTTACCATTAGGATTAAGAAGAACATTAGAATATGTGGTGACTGCCATTCAGCATTCAAGTTTGCTTCAAAAGTCTTGAGGAGAGAAATCATTGTAAGAGATACCAATAGATTTCACCATTTCCTTGATGGCTTATGTTCATGCAGGGACTATTGGTAAACGGTAACATGCTTGAGGAAAAACTGGTTCCAGTTCCAGGCTATTGGTAACATGCAGAAGAACAACATTTTTACTTGCACGTTCTTCATTACCGAGATCTGATGGTTTAGAACCCAAGGAGGAGCAACTAGTTGGAGATATCCTTCAAGAACTTGTGTTCAAGCTCTCATTTTAGTAACTTAAAATCTTTGCTGTCTCCCTTACTTAGCCATTGGGCGATGTGCCTATTTCTAAAAGCGGTTGGTTGCAGAGCCTGATGCAAGCCTTCTCGAGGCAGAATTTGTATTTCAATAGAATTCGGGAGAGCTTTGACTACTCAAAACTCAGGGTTATTGAAATTCTTAAAAGAAGTCTATGGAATTCAATGAGTGGAAACCTCAGAGATCAAACTCATCAAGAAGCTCAAGATCCAAAGGTGGGTAAGAAACATAATTCTCTTCTTCAACCTCAATTTTGCAACAAATTTAAACTCTCATTTTTATGATAAGTTAATGCTATGTGCTAGAAGAATACAATGGATTGGATGAGATGATAAATGAACAAAATTATAAGCCAGTGATTGATGATAATAAATTACGATGCATTTTGACCAAATACCTAGACATTAGGGAAATTTTATAGCTCCCAATTGGGACTCTTTGGATAGTTATCACTTTCTCTGTAAATACTTAGACCATTATGAGAAGAGTTTTGAATCTCTAGTCTGCTATGAGTTTGGCTGATGCCTTATCTCCCTCCCCTATGAAAAGAAGTGGAAAGCTGTTCTATGTCTTTCTTGTATTAATTGCAATTCATGAGCCAACTGATTATTGTGTATCAATCTGGTTGTATATGCGTGATTCTCGGGCTAAATTCTAGCGGAAGTATTTACACCCCTACAAGATAGTTATAGTTACCACCTTACCACGACTTTCTAATTTCACTTTTTTTTTTCCACTTTTTTTCCCTTTTCTGGTTGTTTTGCTCATTTCTTACGACGAGTTGTTGCATGTTATTGGATCTCGAGCAATGTGATTTGAAATCCACACTCTCATTCATTTTGGATATCGTAAGGATTTTTAGACGGTGAGTGAAAATCTTTCTTACAACTATAATAAGCTTTTATTTTCGGTTTAAATAATAAATAAATAAATAGCTAATCTAAATCTTTTGCCTTTTTTTCTCATTCATTTTTTTCCTACTTGGCATACTCCAAATTTGAAAGAAAAATAATGAACAATACTAATACGTTTCTGTTCTGTTCTGACATTCAGTGAAGACTGACAAGGAATTTAATGCTGGTGGAGATGATCGATGGTAG

mRNA sequence

ATGAAAATTGCACCACTTTCTCTGTCTTCTCTGAAGAATTTAGTGTTTTCTGATCCAAAACTCAAACCATTAAAATGTTTCTTCTTCGCCGCAAACTACGGCGCAGGTCCGGCGGCTCCTTGTGCCTTCTCAGAATCGGATACGGCGGAAGGCCGAGAGTGGAACGCCGCCGTCGCCGCCACCCCTTTCAACGGCGTCCTCCAAGATGAAGACCTTCTCCGCAAGACCCACATTTCTCCTCAAACTTCCACTCCTTCTACTGGGCTGTACGTTCTGGACCTCATCAACCATGGTTCTTTAGAACCCGACCGAACCCTTTACAGTAAAATGCTGAACAAATGCACCCATTTGCGCAAACTCAAGCAGGGCAGAGTCATTCACGCCCACATCCAGGGTTCTAGTTTCGAGAGTGATCTGGTTCTTCAGAATTTCATTCTAAACATGTATGCGAAATGTGGCAGTCTCGAGGAGGCACGGAACGTGTTTGATAAAATGCCTACGAGAGATATGGTTAGTTGGACTGTGATGATTAGTGGCTTTTCTCAGAGTGGTCTAGCATCTGAGGCTCTGGCTTTGTTCCCGCAGATGCTCCATCAGGGCTTCCAGCCAAACGAGTTTACCTTGTCTAGCCTGTTGAAGGCTTCTGGAACTGGCCCCAGTGATGACCATGGCAGACAACTTCACGCATTTTCTCTCAAATATGGCTACGATGTGAATGTTCATGTGGGAAGTTCACTGCTGGATATGTATGCTAGGTGCGGGCATATGCGAGAAGCCAAAGCGATTTTTGACGGGCTGGCTGGGAAAAACGTGGTGTCTTGGAATGCTCTGATTGCTGTGAAGACTGACAAGGAATTTAATGCTGGTGGAGATGATCGATGGTAG

Coding sequence (CDS)

ATGAAAATTGCACCACTTTCTCTGTCTTCTCTGAAGAATTTAGTGTTTTCTGATCCAAAACTCAAACCATTAAAATGTTTCTTCTTCGCCGCAAACTACGGCGCAGGTCCGGCGGCTCCTTGTGCCTTCTCAGAATCGGATACGGCGGAAGGCCGAGAGTGGAACGCCGCCGTCGCCGCCACCCCTTTCAACGGCGTCCTCCAAGATGAAGACCTTCTCCGCAAGACCCACATTTCTCCTCAAACTTCCACTCCTTCTACTGGGCTGTACGTTCTGGACCTCATCAACCATGGTTCTTTAGAACCCGACCGAACCCTTTACAGTAAAATGCTGAACAAATGCACCCATTTGCGCAAACTCAAGCAGGGCAGAGTCATTCACGCCCACATCCAGGGTTCTAGTTTCGAGAGTGATCTGGTTCTTCAGAATTTCATTCTAAACATGTATGCGAAATGTGGCAGTCTCGAGGAGGCACGGAACGTGTTTGATAAAATGCCTACGAGAGATATGGTTAGTTGGACTGTGATGATTAGTGGCTTTTCTCAGAGTGGTCTAGCATCTGAGGCTCTGGCTTTGTTCCCGCAGATGCTCCATCAGGGCTTCCAGCCAAACGAGTTTACCTTGTCTAGCCTGTTGAAGGCTTCTGGAACTGGCCCCAGTGATGACCATGGCAGACAACTTCACGCATTTTCTCTCAAATATGGCTACGATGTGAATGTTCATGTGGGAAGTTCACTGCTGGATATGTATGCTAGGTGCGGGCATATGCGAGAAGCCAAAGCGATTTTTGACGGGCTGGCTGGGAAAAACGTGGTGTCTTGGAATGCTCTGATTGCTGTGAAGACTGACAAGGAATTTAATGCTGGTGGAGATGATCGATGGTAG

Protein sequence

MKIAPLSLSSLKNLVFSDPKLKPLKCFFFAANYGAGPAAPCAFSESDTAEGREWNAAVAATPFNGVLQDEDLLRKTHISPQTSTPSTGLYVLDLINHGSLEPDRTLYSKMLNKCTHLRKLKQGRVIHAHIQGSSFESDLVLQNFILNMYAKCGSLEEARNVFDKMPTRDMVSWTVMISGFSQSGLASEALALFPQMLHQGFQPNEFTLSSLLKASGTGPSDDHGRQLHAFSLKYGYDVNVHVGSSLLDMYARCGHMREAKAIFDGLAGKNVVSWNALIAVKTDKEFNAGGDDRW
Homology
[Close]
BLAST of MS024466 vs. NCBI nr
Match: XP_022142695.1 (pentatricopeptide repeat-containing protein At3g24000, mitochondrial [Momordica charantia] >XP_022142696.1 pentatricopeptide repeat-containing protein At3g24000, mitochondrial [Momordica charantia] >XP_022142697.1 pentatricopeptide repeat-containing protein At3g24000, mitochondrial [Momordica charantia] >XP_022142698.1 pentatricopeptide repeat-containing protein At3g24000, mitochondrial [Momordica charantia] >XP_022142700.1 pentatricopeptide repeat-containing protein At3g24000, mitochondrial [Momordica charantia] >XP_022142701.1 pentatricopeptide repeat-containing protein At3g24000, mitochondrial [Momordica charantia] >XP_022142702.1 pentatricopeptide repeat-containing protein At3g24000, mitochondrial [Momordica charantia])

HSP 1 Score: 564.3 bits (1453), Expect = 6.1e-157
Identity = 277/279 (99.28%), Postives = 279/279 (100.00%), Query Frame = 0 

Query: 1   MKIAPLSLSSLKNLVFSDPKLKPLKCFFFAANYGAGPAAPCAFSESDTAEGREWNAAVAA 60
           MKIAPLSLSSLKNLVFSDPKLKPLKCFFFAANYGAGPAAPCAFSESDTAEGREWNAAVAA
Sbjct: 1   MKIAPLSLSSLKNLVFSDPKLKPLKCFFFAANYGAGPAAPCAFSESDTAEGREWNAAVAA 60

Query: 61  TPFNGVLQDEDLLRKTHISPQTSTPSTGLYVLDLINHGSLEPDRTLYSKMLNKCTHLRKL 120
           TPFNGVLQDEDLLRKTHISPQTSTPSTGLYVLDL+NHGSLEPDRTLYSKMLNKCTHLRKL
Sbjct: 61  TPFNGVLQDEDLLRKTHISPQTSTPSTGLYVLDLLNHGSLEPDRTLYSKMLNKCTHLRKL 120

Query: 121 KQGRVIHAHIQGSSFESDLVLQNFILNMYAKCGSLEEARNVFDKMPTRDMVSWTVMISGF 180
           KQGRVIHAHIQGSSFESDLVLQNFILNMYAKCGS+EEARNVFDKMPTRDMVSWTVMISGF
Sbjct: 121 KQGRVIHAHIQGSSFESDLVLQNFILNMYAKCGSVEEARNVFDKMPTRDMVSWTVMISGF 180

Query: 181 SQSGLASEALALFPQMLHQGFQPNEFTLSSLLKASGTGPSDDHGRQLHAFSLKYGYDVNV 240
           SQSGLASEALALFPQMLHQGFQPNEFTLSSLLKASGTGPSDDHGRQLHAFSLKYGYDVNV
Sbjct: 181 SQSGLASEALALFPQMLHQGFQPNEFTLSSLLKASGTGPSDDHGRQLHAFSLKYGYDVNV 240

Query: 241 HVGSSLLDMYARCGHMREAKAIFDGLAGKNVVSWNALIA 280
           HVGSSLLDMYARCGHMREAKAIFDGLAGKNVVSWNALIA
Sbjct: 241 HVGSSLLDMYARCGHMREAKAIFDGLAGKNVVSWNALIA 279

[Close]
BLAST of MS024466 vs. NCBI nr
Match: XP_022973115.1 (pentatricopeptide repeat-containing protein At3g24000, mitochondrial [Cucurbita maxima])

HSP 1 Score: 464.5 bits (1194), Expect = 6.6e-127
Identity = 231/281 (82.21%), Postives = 254/281 (90.39%), Query Frame = 0 

Query: 1   MKIAPLSLSSLKNLVFSD-PKLKPLKCFFFAANYGAGPAAPCAFSESDTAEGREWNAAVA 60
           MKIAP+S SSL+NLV SD PKLKP KCFF AANYG G + PC+ +ESD+AEGR+WNAA A
Sbjct: 1   MKIAPISPSSLQNLVLSDLPKLKPFKCFFSAANYGTG-SPPCSLTESDSAEGRDWNAAAA 60

Query: 61  ATPFNGVLQDEDLLRKTHI-SPQTSTPSTGLYVLDLINHGSLEPDRTLYSKMLNKCTHLR 120
           A PF GVLQDEDLLRKTHI S +TST STGLYVLDLINHG LEP+RTLYSKMLNKCTHLR
Sbjct: 61  AVPFTGVLQDEDLLRKTHISSSETSTSSTGLYVLDLINHGKLEPERTLYSKMLNKCTHLR 120

Query: 121 KLKQGRVIHAHIQGSSFESDLVLQNFILNMYAKCGSLEEARNVFDKMPTRDMVSWTVMIS 180
           KLK GRVIH+HIQGS+FE+DLV+QN ILNMYAKCGSLEEA N+FDKMPTRDMVSWTV+IS
Sbjct: 121 KLKLGRVIHSHIQGSTFENDLVIQNSILNMYAKCGSLEEAHNLFDKMPTRDMVSWTVLIS 180

Query: 181 GFSQSGLASEALALFPQMLHQGFQPNEFTLSSLLKASGTGPSDDHGRQLHAFSLKYGYDV 240
           G+SQSG A EAL LFPQM HQGFQPNEFTLSSLLKASG  PSD+HGRQLHAFSLKYG+++
Sbjct: 181 GYSQSGRAFEALGLFPQMFHQGFQPNEFTLSSLLKASGASPSDEHGRQLHAFSLKYGFNM 240

Query: 241 NVHVGSSLLDMYARCGHMREAKAIFDGLAGKNVVSWNALIA 280
           NVHVGSSLLDMYAR GHM+EA+AIF+GLA KNVVSWNALIA
Sbjct: 241 NVHVGSSLLDMYARWGHMQEAEAIFNGLAAKNVVSWNALIA 280

[Close]
BLAST of MS024466 vs. NCBI nr
Match: XP_022927532.1 (pentatricopeptide repeat-containing protein At3g24000, mitochondrial [Cucurbita moschata])

HSP 1 Score: 443.0 bits (1138), Expect = 2.1e-120
Identity = 227/281 (80.78%), Postives = 246/281 (87.54%), Query Frame = 0 

Query: 1   MKIAPLSLSSLKNLVFSD-PKLKPLKCFFFAANYGAGPAAPCAFSESDTAEGREWNAAVA 60
           MKIAP+S SSLKNLV SD PKLKP K FF AANYG GP  PC+F+ESD       +AA A
Sbjct: 1   MKIAPISSSSLKNLVLSDLPKLKPFKWFFSAANYGTGP-PPCSFTESD-------SAAAA 60

Query: 61  ATPFNGVLQDEDLLRKTHI-SPQTSTPSTGLYVLDLINHGSLEPDRTLYSKMLNKCTHLR 120
           A PF GVLQDEDLLRKTH+ S +TST STGLYVLDLINHG LEP+RTLYSKMLNKCT LR
Sbjct: 61  AVPFTGVLQDEDLLRKTHMSSSETSTNSTGLYVLDLINHGKLEPERTLYSKMLNKCTLLR 120

Query: 121 KLKQGRVIHAHIQGSSFESDLVLQNFILNMYAKCGSLEEARNVFDKMPTRDMVSWTVMIS 180
           KLK GRVIH+HIQGS+FE+DLV+QN ILNMYAKCGSLEEA N+FDKMPTRDMVSWTV+IS
Sbjct: 121 KLKLGRVIHSHIQGSTFENDLVIQNSILNMYAKCGSLEEAHNLFDKMPTRDMVSWTVLIS 180

Query: 181 GFSQSGLASEALALFPQMLHQGFQPNEFTLSSLLKASGTGPSDDHGRQLHAFSLKYGYDV 240
           G+SQSG A EAL LFPQM HQGFQPNEFTLSSLLKASG  PSDDHGRQLHAFSLKYG+D+
Sbjct: 181 GYSQSGRAFEALGLFPQMFHQGFQPNEFTLSSLLKASGASPSDDHGRQLHAFSLKYGFDM 240

Query: 241 NVHVGSSLLDMYARCGHMREAKAIFDGLAGKNVVSWNALIA 280
           NVHVGSSLLDMYAR GHM+EA+AIF+GLA KNVVSWNALIA
Sbjct: 241 NVHVGSSLLDMYARWGHMQEAEAIFNGLAAKNVVSWNALIA 273

[Close]
BLAST of MS024466 vs. NCBI nr
Match: KAG6583676.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019337.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 443.0 bits (1138), Expect = 2.1e-120
Identity = 227/281 (80.78%), Postives = 246/281 (87.54%), Query Frame = 0 

Query: 1   MKIAPLSLSSLKNLVFSD-PKLKPLKCFFFAANYGAGPAAPCAFSESDTAEGREWNAAVA 60
           MKIAP+S SSLKNLV SD PKLKP K FF AANYG GP  PC+F+ESD       +AA A
Sbjct: 1   MKIAPISSSSLKNLVLSDLPKLKPFKWFFSAANYGTGP-PPCSFTESD-------SAAAA 60

Query: 61  ATPFNGVLQDEDLLRKTHI-SPQTSTPSTGLYVLDLINHGSLEPDRTLYSKMLNKCTHLR 120
           A PF GVLQDEDLLRKTH+ S +TST STGLYVLDLINHG LEP+RTLYSKMLNKCT LR
Sbjct: 61  AVPFTGVLQDEDLLRKTHMSSSETSTNSTGLYVLDLINHGKLEPERTLYSKMLNKCTLLR 120

Query: 121 KLKQGRVIHAHIQGSSFESDLVLQNFILNMYAKCGSLEEARNVFDKMPTRDMVSWTVMIS 180
           KLK GRVIH+HIQGS+FE+DLV+QN ILNMYAKCGSLEEA N+FDKMPTRDMVSWTV+IS
Sbjct: 121 KLKLGRVIHSHIQGSTFENDLVIQNSILNMYAKCGSLEEAHNLFDKMPTRDMVSWTVLIS 180

Query: 181 GFSQSGLASEALALFPQMLHQGFQPNEFTLSSLLKASGTGPSDDHGRQLHAFSLKYGYDV 240
           G+SQSG A EAL LFPQM HQGFQPNEFTLSSLLKASG  PSDDHGRQLHAFSLKYG+D+
Sbjct: 181 GYSQSGRAFEALGLFPQMFHQGFQPNEFTLSSLLKASGASPSDDHGRQLHAFSLKYGFDM 240

Query: 241 NVHVGSSLLDMYARCGHMREAKAIFDGLAGKNVVSWNALIA 280
           NVHVGSSLLDMYAR GHM+EA+AIF+GLA KNVVSWNALIA
Sbjct: 241 NVHVGSSLLDMYARWGHMQEAEAIFNGLAAKNVVSWNALIA 273

[Close]
BLAST of MS024466 vs. NCBI nr
Match: XP_023520189.1 (pentatricopeptide repeat-containing protein At3g24000, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 432.6 bits (1111), Expect = 2.8e-117
Identity = 225/290 (77.59%), Postives = 245/290 (84.48%), Query Frame = 0 

Query: 1   MKIAPL---------SLSSLKNLVFSD-PKLKPLKCFFFAANYGAGPAAPCAFSESDTAE 60
           MKIAP+         S SSLKNLV S+ PKL P KCFF AANYG G + PC+ +ESD   
Sbjct: 1   MKIAPISSSSSSSSSSSSSLKNLVLSNLPKLNPFKCFFSAANYGTG-SPPCSLTESD--- 60

Query: 61  GREWNAAVAATPFNGVLQDEDLLRKTHI-SPQTSTPSTGLYVLDLINHGSLEPDRTLYSK 120
               +AA AA PF GVLQDEDLLRKTHI S +TST STGLYVLDLINHG LEP+RTLYSK
Sbjct: 61  ----SAAAAAVPFTGVLQDEDLLRKTHISSSETSTSSTGLYVLDLINHGKLEPERTLYSK 120

Query: 121 MLNKCTHLRKLKQGRVIHAHIQGSSFESDLVLQNFILNMYAKCGSLEEARNVFDKMPTRD 180
           MLNKCT LRKLK GRVIH+HIQGS+FE+DLV+QN ILNMYAKCGSLEEA N+FDKMPTRD
Sbjct: 121 MLNKCTLLRKLKLGRVIHSHIQGSTFENDLVIQNSILNMYAKCGSLEEAHNLFDKMPTRD 180

Query: 181 MVSWTVMISGFSQSGLASEALALFPQMLHQGFQPNEFTLSSLLKASGTGPSDDHGRQLHA 240
           MVSWTV+ISG+SQSG A EAL LFPQM HQGFQPNEFTLSSLLKASG  PSDDHGRQLHA
Sbjct: 181 MVSWTVLISGYSQSGRAFEALGLFPQMFHQGFQPNEFTLSSLLKASGASPSDDHGRQLHA 240

Query: 241 FSLKYGYDVNVHVGSSLLDMYARCGHMREAKAIFDGLAGKNVVSWNALIA 280
           FSLKYG+D+NVHVGSSLLDMYAR GHM+EA+AIF+GLA KNVVSWNALIA
Sbjct: 241 FSLKYGFDMNVHVGSSLLDMYARWGHMQEAEAIFNGLAAKNVVSWNALIA 282

[Close]
BLAST of MS024466 vs. ExPASy Swiss-Prot
Match: Q9LIQ7 (Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H87 PE=3 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 2.5e-52
Identity = 103/183 (56.28%), Postives = 128/183 (69.95%), Query Frame = 0 

Query: 98  GSLEP-DRTLYSKMLNKCTHLRKLKQGRVIHAHIQGSSFESDLVLQNFILNMYAKCGSLE 157
           GS  P DR  Y+ +L KCT  + L QGR++HAHI  S F  D+V+ N +LNMYAKCGSLE
Sbjct: 53  GSYIPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLE 112

Query: 158 EARNVFDKMPTRDMVSWTVMISGFSQSGLASEALALFPQMLHQGFQPNEFTLSSLLKASG 217
           EAR VF+KMP RD V+WT +ISG+SQ     +AL  F QML  G+ PNEFTLSS++KA+ 
Sbjct: 113 EARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAA 172

Query: 218 TGPSDDHGRQLHAFSLKYGYDVNVHVGSSLLDMYARCGHMREAKAIFDGLAGKNVVSWNA 277
                  G QLH F +K G+D NVHVGS+LLD+Y R G M +A+ +FD L  +N VSWNA
Sbjct: 173 AERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNA 232

Query: 278 LIA 280
           LIA
Sbjct: 233 LIA 235

[Close]
BLAST of MS024466 vs. ExPASy Swiss-Prot
Match: Q9LIC3 (Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H85 PE=3 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.1e-36
Identity = 90/227 (39.65%), Postives = 134/227 (59.03%), Query Frame = 0 

Query: 59  AATPFNGVLQDEDLLRKTHISPQTSTPSTGLYVLDLINHGSLEPDRTL--YSKMLNKCTH 118
           +++P N VLQ         I P +   S G     L+    L P+     Y  +LN C  
Sbjct: 13  SSSPTNYVLQT--------ILPISQLCSNGRLQEALLEMAMLGPEMGFHGYDALLNACLD 72

Query: 119 LRKLKQGRVIHAHIQGSSFESDLVLQNFILNMYAKCGSLEEARNVFDKMPTRDMVSWTVM 178
            R L+ G+ +HAH+  + +     L+  +L  Y KC  LE+AR V D+MP +++VSWT M
Sbjct: 73  KRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAM 132

Query: 179 ISGFSQSGLASEALALFPQMLHQGFQPNEFT----LSSLLKASGTGPSDDHGRQLHAFSL 238
           IS +SQ+G +SEAL +F +M+    +PNEFT    L+S ++ASG G     G+Q+H   +
Sbjct: 133 ISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLG----LGKQIHGLIV 192

Query: 239 KYGYDVNVHVGSSLLDMYARCGHMREAKAIFDGLAGKNVVSWNALIA 280
           K+ YD ++ VGSSLLDMYA+ G ++EA+ IF+ L  ++VVS  A+IA
Sbjct: 193 KWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIA 227

[Close]
BLAST of MS024466 vs. ExPASy Swiss-Prot
Match: A8MQA3 (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 154.8 bits (390), Expect = 1.5e-36
Identity = 73/181 (40.33%), Postives = 114/181 (62.98%), Query Frame = 0 

Query: 98  GSLEPDRTLYSKMLNKCTHLRKLKQGRVIHAHIQGSSFESDLVLQNFILNMYAKCGSLEE 157
           G +EPD   Y  ++   T +  ++ G  IH+ +  S F S + +QN +L++YA CG +  
Sbjct: 115 GLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVAS 174

Query: 158 ARNVFDKMPTRDMVSWTVMISGFSQSGLASEALALFPQMLHQGFQPNEFTLSSLLKASGT 217
           A  VFDKMP +D+V+W  +I+GF+++G   EALAL+ +M  +G +P+ FT+ SLL A   
Sbjct: 175 AYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAK 234

Query: 218 GPSDDHGRQLHAFSLKYGYDVNVHVGSSLLDMYARCGHMREAKAIFDGLAGKNVVSWNAL 277
             +   G+++H + +K G   N+H  + LLD+YARCG + EAK +FD +  KN VSW +L
Sbjct: 235 IGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSL 294

Query: 278 I 279
           I
Sbjct: 295 I 295

[Close]
BLAST of MS024466 vs. ExPASy Swiss-Prot
Match: P93011 (Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H6 PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.4e-34
Identity = 65/181 (35.91%), Postives = 110/181 (60.77%), Query Frame = 0 

Query: 99  SLEPDRTLYSKMLNKCTHLRKLKQGRVIHAHIQGSSFESDLVLQNFILNMYAKCGSLEEA 158
           ++ P    ++ ++  C  L  L+ G+ +H H   S F  D  +Q  ++  Y+KCG +E A
Sbjct: 102 NVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGA 161

Query: 159 RNVFDKMPTRDMVSWTVMISGFSQSGLASEALALFPQMLHQGFQPNEFTLSSLLKASGTG 218
           R VFD+MP + +V+W  ++SGF Q+GLA EA+ +F QM   GF+P+  T  SLL A    
Sbjct: 162 RQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQT 221

Query: 219 PSDDHGRQLHAFSLKYGYDVNVHVGSSLLDMYARCGHMREAKAIFDGLAGKNVVSWNALI 278
            +   G  +H + +  G D+NV +G++L+++Y+RCG + +A+ +FD +   NV +W A+I
Sbjct: 222 GAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMI 281

Query: 279 A 280
           +
Sbjct: 282 S 282

[Close]
BLAST of MS024466 vs. ExPASy Swiss-Prot
Match: Q3E6Q1 (Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H40 PE=2 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.4e-34
Identity = 68/191 (35.60%), Postives = 115/191 (60.21%), Query Frame = 0 

Query: 95  INHGSLEPDRTLYSKMLNKCTHLRKLKQGRVIHAHIQGSSFESDLVLQNFILNMYAKCGS 154
           + +  +EP    ++ +L  C    +L+ G+ IH  +  S F  DL     + NMYAKC  
Sbjct: 126 MRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQ 185

Query: 155 LEEARNVFDKMPTRDMVSWTVMISGFSQSGLASEALALFPQMLHQGFQPNEFTLSSLLKA 214
           + EAR VFD+MP RD+VSW  +++G+SQ+G+A  AL +   M  +  +P+  T+ S+L A
Sbjct: 186 VNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPA 245

Query: 215 SGTGPSDDHGRQLHAFSLKYGYDVNVHVGSSLLDMYARCGHMREAKAIFDGLAGKNVVSW 274
                    G+++H ++++ G+D  V++ ++L+DMYA+CG +  A+ +FDG+  +NVVSW
Sbjct: 246 VSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSW 305

Query: 275 NALIAVKTDKE 286
           N++I      E
Sbjct: 306 NSMIDAYVQNE 316

[Close]
BLAST of MS024466 vs. ExPASy TrEMBL
Match: A0A6J1CNX3 (pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111012750 PE=3 SV=1)

HSP 1 Score: 564.3 bits (1453), Expect = 3.0e-157
Identity = 277/279 (99.28%), Postives = 279/279 (100.00%), Query Frame = 0 

Query: 1   MKIAPLSLSSLKNLVFSDPKLKPLKCFFFAANYGAGPAAPCAFSESDTAEGREWNAAVAA 60
           MKIAPLSLSSLKNLVFSDPKLKPLKCFFFAANYGAGPAAPCAFSESDTAEGREWNAAVAA
Sbjct: 1   MKIAPLSLSSLKNLVFSDPKLKPLKCFFFAANYGAGPAAPCAFSESDTAEGREWNAAVAA 60

Query: 61  TPFNGVLQDEDLLRKTHISPQTSTPSTGLYVLDLINHGSLEPDRTLYSKMLNKCTHLRKL 120
           TPFNGVLQDEDLLRKTHISPQTSTPSTGLYVLDL+NHGSLEPDRTLYSKMLNKCTHLRKL
Sbjct: 61  TPFNGVLQDEDLLRKTHISPQTSTPSTGLYVLDLLNHGSLEPDRTLYSKMLNKCTHLRKL 120

Query: 121 KQGRVIHAHIQGSSFESDLVLQNFILNMYAKCGSLEEARNVFDKMPTRDMVSWTVMISGF 180
           KQGRVIHAHIQGSSFESDLVLQNFILNMYAKCGS+EEARNVFDKMPTRDMVSWTVMISGF
Sbjct: 121 KQGRVIHAHIQGSSFESDLVLQNFILNMYAKCGSVEEARNVFDKMPTRDMVSWTVMISGF 180

Query: 181 SQSGLASEALALFPQMLHQGFQPNEFTLSSLLKASGTGPSDDHGRQLHAFSLKYGYDVNV 240
           SQSGLASEALALFPQMLHQGFQPNEFTLSSLLKASGTGPSDDHGRQLHAFSLKYGYDVNV
Sbjct: 181 SQSGLASEALALFPQMLHQGFQPNEFTLSSLLKASGTGPSDDHGRQLHAFSLKYGYDVNV 240

Query: 241 HVGSSLLDMYARCGHMREAKAIFDGLAGKNVVSWNALIA 280
           HVGSSLLDMYARCGHMREAKAIFDGLAGKNVVSWNALIA
Sbjct: 241 HVGSSLLDMYARCGHMREAKAIFDGLAGKNVVSWNALIA 279

[Close]
BLAST of MS024466 vs. ExPASy TrEMBL
Match: A0A6J1IAI9 (pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111471639 PE=3 SV=1)

HSP 1 Score: 464.5 bits (1194), Expect = 3.2e-127
Identity = 231/281 (82.21%), Postives = 254/281 (90.39%), Query Frame = 0 

Query: 1   MKIAPLSLSSLKNLVFSD-PKLKPLKCFFFAANYGAGPAAPCAFSESDTAEGREWNAAVA 60
           MKIAP+S SSL+NLV SD PKLKP KCFF AANYG G + PC+ +ESD+AEGR+WNAA A
Sbjct: 1   MKIAPISPSSLQNLVLSDLPKLKPFKCFFSAANYGTG-SPPCSLTESDSAEGRDWNAAAA 60

Query: 61  ATPFNGVLQDEDLLRKTHI-SPQTSTPSTGLYVLDLINHGSLEPDRTLYSKMLNKCTHLR 120
           A PF GVLQDEDLLRKTHI S +TST STGLYVLDLINHG LEP+RTLYSKMLNKCTHLR
Sbjct: 61  AVPFTGVLQDEDLLRKTHISSSETSTSSTGLYVLDLINHGKLEPERTLYSKMLNKCTHLR 120

Query: 121 KLKQGRVIHAHIQGSSFESDLVLQNFILNMYAKCGSLEEARNVFDKMPTRDMVSWTVMIS 180
           KLK GRVIH+HIQGS+FE+DLV+QN ILNMYAKCGSLEEA N+FDKMPTRDMVSWTV+IS
Sbjct: 121 KLKLGRVIHSHIQGSTFENDLVIQNSILNMYAKCGSLEEAHNLFDKMPTRDMVSWTVLIS 180

Query: 181 GFSQSGLASEALALFPQMLHQGFQPNEFTLSSLLKASGTGPSDDHGRQLHAFSLKYGYDV 240
           G+SQSG A EAL LFPQM HQGFQPNEFTLSSLLKASG  PSD+HGRQLHAFSLKYG+++
Sbjct: 181 GYSQSGRAFEALGLFPQMFHQGFQPNEFTLSSLLKASGASPSDEHGRQLHAFSLKYGFNM 240

Query: 241 NVHVGSSLLDMYARCGHMREAKAIFDGLAGKNVVSWNALIA 280
           NVHVGSSLLDMYAR GHM+EA+AIF+GLA KNVVSWNALIA
Sbjct: 241 NVHVGSSLLDMYARWGHMQEAEAIFNGLAAKNVVSWNALIA 280

[Close]
BLAST of MS024466 vs. ExPASy TrEMBL
Match: A0A6J1EHG0 (pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111434330 PE=3 SV=1)

HSP 1 Score: 443.0 bits (1138), Expect = 1.0e-120
Identity = 227/281 (80.78%), Postives = 246/281 (87.54%), Query Frame = 0 

Query: 1   MKIAPLSLSSLKNLVFSD-PKLKPLKCFFFAANYGAGPAAPCAFSESDTAEGREWNAAVA 60
           MKIAP+S SSLKNLV SD PKLKP K FF AANYG GP  PC+F+ESD       +AA A
Sbjct: 1   MKIAPISSSSLKNLVLSDLPKLKPFKWFFSAANYGTGP-PPCSFTESD-------SAAAA 60

Query: 61  ATPFNGVLQDEDLLRKTHI-SPQTSTPSTGLYVLDLINHGSLEPDRTLYSKMLNKCTHLR 120
           A PF GVLQDEDLLRKTH+ S +TST STGLYVLDLINHG LEP+RTLYSKMLNKCT LR
Sbjct: 61  AVPFTGVLQDEDLLRKTHMSSSETSTNSTGLYVLDLINHGKLEPERTLYSKMLNKCTLLR 120

Query: 121 KLKQGRVIHAHIQGSSFESDLVLQNFILNMYAKCGSLEEARNVFDKMPTRDMVSWTVMIS 180
           KLK GRVIH+HIQGS+FE+DLV+QN ILNMYAKCGSLEEA N+FDKMPTRDMVSWTV+IS
Sbjct: 121 KLKLGRVIHSHIQGSTFENDLVIQNSILNMYAKCGSLEEAHNLFDKMPTRDMVSWTVLIS 180

Query: 181 GFSQSGLASEALALFPQMLHQGFQPNEFTLSSLLKASGTGPSDDHGRQLHAFSLKYGYDV 240
           G+SQSG A EAL LFPQM HQGFQPNEFTLSSLLKASG  PSDDHGRQLHAFSLKYG+D+
Sbjct: 181 GYSQSGRAFEALGLFPQMFHQGFQPNEFTLSSLLKASGASPSDDHGRQLHAFSLKYGFDM 240

Query: 241 NVHVGSSLLDMYARCGHMREAKAIFDGLAGKNVVSWNALIA 280
           NVHVGSSLLDMYAR GHM+EA+AIF+GLA KNVVSWNALIA
Sbjct: 241 NVHVGSSLLDMYARWGHMQEAEAIFNGLAAKNVVSWNALIA 273

[Close]
BLAST of MS024466 vs. ExPASy TrEMBL
Match: A0A5D3CU56 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00540 PE=3 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 1.7e-112
Identity = 211/267 (79.03%), Postives = 229/267 (85.77%), Query Frame = 0 

Query: 14  LVFSDPKLKPLKCFFFAANYGAGPAAPCAFSESDTAEGREWNAAVAATPFNGVLQDEDLL 73
           L  S  KLK L+CF FAA YG G  APCAF+ES+ AE ++WN A A  PF GVLQDEDLL
Sbjct: 17  LALSHSKLKTLRCFLFAAKYGTG-LAPCAFTESNMAESQDWNPATA--PFTGVLQDEDLL 76

Query: 74  RKTHI-SPQTSTPSTGLYVLDLINHGSLEPDRTLYSKMLNKCTHLRKLKQGRVIHAHIQG 133
           R THI S   S+ STGLYVLDLIN GSLEP+RTLYSKMLNKCT+LRKLKQGR IHAHIQ 
Sbjct: 77  RTTHISSSDVSSSSTGLYVLDLINCGSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQS 136

Query: 134 SSFESDLVLQNFILNMYAKCGSLEEARNVFDKMPTRDMVSWTVMISGFSQSGLASEALAL 193
           S+FE+D VL NFILNMYAKCGSLEEA+++FDKMPT+D VSWTV+ISG+SQS  ASEALAL
Sbjct: 137 SAFENDPVLLNFILNMYAKCGSLEEAQDLFDKMPTKDRVSWTVLISGYSQSRRASEALAL 196

Query: 194 FPQMLHQGFQPNEFTLSSLLKASGTGPSDDHGRQLHAFSLKYGYDVNVHVGSSLLDMYAR 253
           FP+MLH GFQPNEFTLSSLLKASG GPSDDHGRQLHAFSLKYGYD+NVHVGSSLLDMYAR
Sbjct: 197 FPKMLHLGFQPNEFTLSSLLKASGAGPSDDHGRQLHAFSLKYGYDMNVHVGSSLLDMYAR 256

Query: 254 CGHMREAKAIFDGLAGKNVVSWNALIA 280
            GHMREAK IF  LA KNVVSWNALIA
Sbjct: 257 WGHMREAKVIFKSLAAKNVVSWNALIA 280

[Close]
BLAST of MS024466 vs. ExPASy TrEMBL
Match: A0A1S3CMN0 (pentatricopeptide repeat-containing protein At3g24000, mitochondrial isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502212 PE=3 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 1.7e-112
Identity = 211/267 (79.03%), Postives = 229/267 (85.77%), Query Frame = 0 

Query: 14  LVFSDPKLKPLKCFFFAANYGAGPAAPCAFSESDTAEGREWNAAVAATPFNGVLQDEDLL 73
           L  S  KLK L+CF FAA YG G  APCAF+ES+ AE ++WN A A  PF GVLQDEDLL
Sbjct: 19  LALSHSKLKTLRCFLFAAKYGTG-LAPCAFTESNMAESQDWNPATA--PFTGVLQDEDLL 78

Query: 74  RKTHI-SPQTSTPSTGLYVLDLINHGSLEPDRTLYSKMLNKCTHLRKLKQGRVIHAHIQG 133
           R THI S   S+ STGLYVLDLIN GSLEP+RTLYSKMLNKCT+LRKLKQGR IHAHIQ 
Sbjct: 79  RTTHISSSDVSSSSTGLYVLDLINCGSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQS 138

Query: 134 SSFESDLVLQNFILNMYAKCGSLEEARNVFDKMPTRDMVSWTVMISGFSQSGLASEALAL 193
           S+FE+D VL NFILNMYAKCGSLEEA+++FDKMPT+D VSWTV+ISG+SQS  ASEALAL
Sbjct: 139 SAFENDPVLLNFILNMYAKCGSLEEAQDLFDKMPTKDRVSWTVLISGYSQSRRASEALAL 198

Query: 194 FPQMLHQGFQPNEFTLSSLLKASGTGPSDDHGRQLHAFSLKYGYDVNVHVGSSLLDMYAR 253
           FP+MLH GFQPNEFTLSSLLKASG GPSDDHGRQLHAFSLKYGYD+NVHVGSSLLDMYAR
Sbjct: 199 FPKMLHLGFQPNEFTLSSLLKASGAGPSDDHGRQLHAFSLKYGYDMNVHVGSSLLDMYAR 258

Query: 254 CGHMREAKAIFDGLAGKNVVSWNALIA 280
            GHMREAK IF  LA KNVVSWNALIA
Sbjct: 259 WGHMREAKVIFKSLAAKNVVSWNALIA 282

[Close]
BLAST of MS024466 vs. TAIR 10
Match: AT3G24000.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 207.2 bits (526), Expect = 1.8e-53
Identity = 103/183 (56.28%), Postives = 128/183 (69.95%), Query Frame = 0 

Query: 98  GSLEP-DRTLYSKMLNKCTHLRKLKQGRVIHAHIQGSSFESDLVLQNFILNMYAKCGSLE 157
           GS  P DR  Y+ +L KCT  + L QGR++HAHI  S F  D+V+ N +LNMYAKCGSLE
Sbjct: 53  GSYIPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLE 112

Query: 158 EARNVFDKMPTRDMVSWTVMISGFSQSGLASEALALFPQMLHQGFQPNEFTLSSLLKASG 217
           EAR VF+KMP RD V+WT +ISG+SQ     +AL  F QML  G+ PNEFTLSS++KA+ 
Sbjct: 113 EARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAA 172

Query: 218 TGPSDDHGRQLHAFSLKYGYDVNVHVGSSLLDMYARCGHMREAKAIFDGLAGKNVVSWNA 277
                  G QLH F +K G+D NVHVGS+LLD+Y R G M +A+ +FD L  +N VSWNA
Sbjct: 173 AERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNA 232

Query: 278 LIA 280
           LIA
Sbjct: 233 LIA 235

[Close]
BLAST of MS024466 vs. TAIR 10
Match: AT3G13770.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 155.2 bits (391), Expect = 8.0e-38
Identity = 90/227 (39.65%), Postives = 134/227 (59.03%), Query Frame = 0 

Query: 59  AATPFNGVLQDEDLLRKTHISPQTSTPSTGLYVLDLINHGSLEPDRTL--YSKMLNKCTH 118
           +++P N VLQ         I P +   S G     L+    L P+     Y  +LN C  
Sbjct: 13  SSSPTNYVLQT--------ILPISQLCSNGRLQEALLEMAMLGPEMGFHGYDALLNACLD 72

Query: 119 LRKLKQGRVIHAHIQGSSFESDLVLQNFILNMYAKCGSLEEARNVFDKMPTRDMVSWTVM 178
            R L+ G+ +HAH+  + +     L+  +L  Y KC  LE+AR V D+MP +++VSWT M
Sbjct: 73  KRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAM 132

Query: 179 ISGFSQSGLASEALALFPQMLHQGFQPNEFT----LSSLLKASGTGPSDDHGRQLHAFSL 238
           IS +SQ+G +SEAL +F +M+    +PNEFT    L+S ++ASG G     G+Q+H   +
Sbjct: 133 ISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLG----LGKQIHGLIV 192

Query: 239 KYGYDVNVHVGSSLLDMYARCGHMREAKAIFDGLAGKNVVSWNALIA 280
           K+ YD ++ VGSSLLDMYA+ G ++EA+ IF+ L  ++VVS  A+IA
Sbjct: 193 KWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIA 227

[Close]
BLAST of MS024466 vs. TAIR 10
Match: AT4G21065.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 154.8 bits (390), Expect = 1.0e-37
Identity = 73/181 (40.33%), Postives = 114/181 (62.98%), Query Frame = 0 

Query: 98  GSLEPDRTLYSKMLNKCTHLRKLKQGRVIHAHIQGSSFESDLVLQNFILNMYAKCGSLEE 157
           G +EPD   Y  ++   T +  ++ G  IH+ +  S F S + +QN +L++YA CG +  
Sbjct: 115 GLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVAS 174

Query: 158 ARNVFDKMPTRDMVSWTVMISGFSQSGLASEALALFPQMLHQGFQPNEFTLSSLLKASGT 217
           A  VFDKMP +D+V+W  +I+GF+++G   EALAL+ +M  +G +P+ FT+ SLL A   
Sbjct: 175 AYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAK 234

Query: 218 GPSDDHGRQLHAFSLKYGYDVNVHVGSSLLDMYARCGHMREAKAIFDGLAGKNVVSWNAL 277
             +   G+++H + +K G   N+H  + LLD+YARCG + EAK +FD +  KN VSW +L
Sbjct: 235 IGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSL 294

Query: 278 I 279
           I
Sbjct: 295 I 295

[Close]
BLAST of MS024466 vs. TAIR 10
Match: AT1G11290.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 148.3 bits (373), Expect = 9.8e-36
Identity = 68/191 (35.60%), Postives = 115/191 (60.21%), Query Frame = 0 

Query: 95  INHGSLEPDRTLYSKMLNKCTHLRKLKQGRVIHAHIQGSSFESDLVLQNFILNMYAKCGS 154
           + +  +EP    ++ +L  C    +L+ G+ IH  +  S F  DL     + NMYAKC  
Sbjct: 126 MRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQ 185

Query: 155 LEEARNVFDKMPTRDMVSWTVMISGFSQSGLASEALALFPQMLHQGFQPNEFTLSSLLKA 214
           + EAR VFD+MP RD+VSW  +++G+SQ+G+A  AL +   M  +  +P+  T+ S+L A
Sbjct: 186 VNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPA 245

Query: 215 SGTGPSDDHGRQLHAFSLKYGYDVNVHVGSSLLDMYARCGHMREAKAIFDGLAGKNVVSW 274
                    G+++H ++++ G+D  V++ ++L+DMYA+CG +  A+ +FDG+  +NVVSW
Sbjct: 246 VSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSW 305

Query: 275 NALIAVKTDKE 286
           N++I      E
Sbjct: 306 NSMIDAYVQNE 316

[Close]
BLAST of MS024466 vs. TAIR 10
Match: AT2G33760.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 148.3 bits (373), Expect = 9.8e-36
Identity = 65/181 (35.91%), Postives = 110/181 (60.77%), Query Frame = 0 

Query: 99  SLEPDRTLYSKMLNKCTHLRKLKQGRVIHAHIQGSSFESDLVLQNFILNMYAKCGSLEEA 158
           ++ P    ++ ++  C  L  L+ G+ +H H   S F  D  +Q  ++  Y+KCG +E A
Sbjct: 102 NVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGA 161

Query: 159 RNVFDKMPTRDMVSWTVMISGFSQSGLASEALALFPQMLHQGFQPNEFTLSSLLKASGTG 218
           R VFD+MP + +V+W  ++SGF Q+GLA EA+ +F QM   GF+P+  T  SLL A    
Sbjct: 162 RQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQT 221

Query: 219 PSDDHGRQLHAFSLKYGYDVNVHVGSSLLDMYARCGHMREAKAIFDGLAGKNVVSWNALI 278
            +   G  +H + +  G D+NV +G++L+++Y+RCG + +A+ +FD +   NV +W A+I
Sbjct: 222 GAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMI 281

Query: 279 A 280
           +
Sbjct: 282 S 282

The following BLAST results are available for this feature:
BLAST of MS024466 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022142695.16.1e-15799.28pentatricopeptide repeat-containing protein At3g24000, mitochondrial [Momordica ... [more]
XP_022973115.16.6e-12782.21pentatricopeptide repeat-containing protein At3g24000, mitochondrial [Cucurbita ... [more]
XP_022927532.12.1e-12080.78pentatricopeptide repeat-containing protein At3g24000, mitochondrial [Cucurbita ... [more]
KAG6583676.12.1e-12080.78Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... [more]
XP_023520189.12.8e-11777.59pentatricopeptide repeat-containing protein At3g24000, mitochondrial [Cucurbita ... [more]
BLAST of MS024466 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LIQ72.5e-5256.28Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidop... [more]
Q9LIC31.1e-3639.65Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS... [more]
A8MQA31.5e-3640.33Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX... [more]
P930111.4e-3435.91Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana OX... [more]
Q3E6Q11.4e-3435.60Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidop... [more]
BLAST of MS024466 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CNX33.0e-15799.28pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Momordic... [more]
A0A6J1IAI93.2e-12782.21pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Cucurbit... [more]
A0A6J1EHG01.0e-12080.78pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Cucurbit... [more]
A0A5D3CU561.7e-11279.03Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3CMN01.7e-11279.03pentatricopeptide repeat-containing protein At3g24000, mitochondrial isoform X1 ... [more]
BLAST of MS024466 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G24000.11.8e-5356.28Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT3G13770.18.0e-3839.65Pentatricopeptide repeat (PPR) superfamily protein [more]
AT4G21065.11.0e-3740.33Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G11290.19.8e-3635.60Pentatricopeptide repeat (PPR) superfamily protein [more]
AT2G33760.19.8e-3635.91Pentatricopeptide repeat (PPR) superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 81..223
e-value: 4.3E-28
score: 100.6
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 224..281
e-value: 4.6E-9
score: 37.8
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 143..168
e-value: 8.8E-4
score: 19.4
coord: 244..266
e-value: 0.028
score: 14.7
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 169..214
e-value: 9.7E-11
score: 41.7
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 171..205
e-value: 3.3E-6
score: 24.9
coord: 143..170
e-value: 4.6E-4
score: 18.2
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 138..168
score: 8.889672
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 169..203
score: 12.090371
NoneNo IPR availablePANTHERPTHR47929:SF9PPR CONTAINING PLANT-LIKE PROTEINcoord: 96..279
coord: 82..214
NoneNo IPR availablePANTHERPTHR47929FAMILY NOT NAMEDcoord: 96..279
coord: 82..214

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS024466.1MS024466.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding