MS024435 (gene) Bitter gourd (TR) v1

Overview
NameMS024435
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionpathogen-related protein-like
Locationscaffold66: 477988 .. 478853 (+)
RNA-Seq ExpressionMS024435
SyntenyMS024435
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATCCATTAACAATGTAGTCAATGAGGGAACCTCCATTGCAACCAATATTCTTCCTGATAAGTTCAGAGCTTCTTTGCATTTGGAGGATCCCACTGTTGAAATGGAGGTATGGGAAGCCTCCCTCTTATGAAATTGTTAATCACCTCTTTGAAGAGGGAAGAACCAAGGTTAGTTAGGTCTATTTCTAAGGGTCAGGTAACATTTCGTTTTTTGTTTCTCATTTTCAAATTTATTAAAAAACTTAAGCATTTTGTAATTAATTATGTTTTTTATTTTATTTTTTTTGGGTTAAAAAATACATTTGATCCTTTGAAAGTAACAATTTAGTCCCTGAACTTTAACGTGTAACGATTTTGACACTATAGTTTAAAATTTGTAACAATTTAGTCTCTATAGTAAAAATTTTTATTAAAATTAAATGTCAAATTTTATCATATAACAATTTAATCTTTCTAATTTATAAACATATTTGGTCCTTCTTTAGTTTATCGATCTATACATACAAGAAAACTTAACAAAAAAAAGTTCAGATAAGAACTAATATTCATTACCAACTTTAACATACAAGGACTAAATTGTTACATATTAAAGTTCAAAGACTAAATTGTTACAAATTTGAAAGTACAGGGACTAAATCGTTACAAATTAAAGTTCATGGACTAAATTGTTAGTTTAGCAAAAGTACAGGGACTAAAATTGTTTTTTAACCTAATACTAATCATCTGTTAGTTTAATTTGTTTTGTGTTTTATGGTAGGTGTGGCCGAAAGGATCTCTGGAAGAAACAGTGCAAAATGCTGTGAAATCATGGCAAGTGGAGATTAACAACAAGAAACTAGATTACAGGATTTCAAGACCATAA

mRNA sequence

ATGGAATCCATTAACAATGTAGTCAATGAGGGAACCTCCATTGCAACCAATATTCTTCCTGATAAGTTCAGAGCTTCTTTGCATTTGGAGGATCCCACTGTTGAAATGGAGGTGTGGCCGAAAGGATCTCTGGAAGAAACAGTGCAAAATGCTGTGAAATCATGGCAAGTGGAGATTAACAACAAGAAACTAGATTACAGGATTTCAAGACCATAA

Coding sequence (CDS)

ATGGAATCCATTAACAATGTAGTCAATGAGGGAACCTCCATTGCAACCAATATTCTTCCTGATAAGTTCAGAGCTTCTTTGCATTTGGAGGATCCCACTGTTGAAATGGAGGTGTGGCCGAAAGGATCTCTGGAAGAAACAGTGCAAAATGCTGTGAAATCATGGCAAGTGGAGATTAACAACAAGAAACTAGATTACAGGATTTCAAGACCATAA

Protein sequence

MESINNVVNEGTSIATNILPDKFRASLHLEDPTVEMEVWPKGSLEETVQNAVKSWQVEINNKKLDYRISRP
Homology
[Close]
BLAST of MS024435 vs. NCBI nr
Match: XP_022142782.1 (pathogen-related protein-like [Momordica charantia])

HSP 1 Score: 110.9 bits (276), Expect = 4.5e-21
Identity = 59/82 (71.95%), Postives = 61/82 (74.39%), Query Frame = 0 

Query: 1  MESINNVVNEGTSIATNILPDKFRASLHLEDPTVE--------------------MEVWP 60
          MESINNVVNEGTSIATNILPDKFRASLHLEDPT+E                     +VWP
Sbjct: 1  MESINNVVNEGTSIATNILPDKFRASLHLEDPTIEWRYGKPPSYEIVDHLFEEGRTKVWP 60

Query: 61 KGSLEETVQNAVKSWQVEINNK 63
          KGSLEETVQNAVKSWQVEINNK
Sbjct: 61 KGSLEETVQNAVKSWQVEINNK 82

[Close]
BLAST of MS024435 vs. NCBI nr
Match: XP_022142750.1 (pathogen-related protein-like [Momordica charantia])

HSP 1 Score: 87.8 bits (216), Expect = 4.1e-14
Identity = 50/83 (60.24%), Postives = 54/83 (65.06%), Query Frame = 0 

Query: 1  MESINNVVNEG-TSIATNILPDKFRASLHLEDPTVE--------------------MEVW 60
          MESIN  + +G +SI TNILPDKFRASLHLE PTVE                     +VW
Sbjct: 1  MESINKAMAKGSSSIGTNILPDKFRASLHLEHPTVEWRYGKPPSYEAANKLFEEGRTQVW 60

Query: 61 PKGSLEETVQNAVKSWQVEINNK 63
          PKGSLEETVQN VKSWQ EINNK
Sbjct: 61 PKGSLEETVQNTVKSWQSEINNK 83

[Close]
BLAST of MS024435 vs. NCBI nr
Match: XP_022931450.1 (pathogen-related protein-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 84.7 bits (208), Expect = 3.4e-13
Identity = 49/83 (59.04%), Postives = 56/83 (67.47%), Query Frame = 0 

Query: 1  MESINNVVNEGTSIATN-ILPDKFRASLHLEDPTVE--------------------MEVW 60
          ME INN V +G+SI T+ ++PDKFRA+LHLE PTVE                     +VW
Sbjct: 1  MEGINN-VTKGSSIGTHGVVPDKFRANLHLEAPTVEWRYGKPPTYESANQLFEEGRSKVW 60

Query: 61 PKGSLEETVQNAVKSWQVEINNK 63
          PKGSLEETVQNAVKSWQVEINNK
Sbjct: 61 PKGSLEETVQNAVKSWQVEINNK 82

[Close]
BLAST of MS024435 vs. NCBI nr
Match: KAG6577037.1 (hypothetical protein SDJN03_24611, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 82.8 bits (203), Expect = 1.3e-12
Identity = 45/82 (54.88%), Postives = 51/82 (62.20%), Query Frame = 0 

Query: 1   MESINNVVNEGTSIATNILPDKFRASLHLEDPTVE--------------------MEVWP 60
           ME INN+    +  A  ++PDKFRA+LHLE PTVE                     +VWP
Sbjct: 19  MEGINNITKGSSIGAHGVVPDKFRANLHLEAPTVEWRYGKPPTYESANHLFEEGRTKVWP 78

Query: 61  KGSLEETVQNAVKSWQVEINNK 63
           KGSLEETVQNAVKSWQVEINNK
Sbjct: 79  KGSLEETVQNAVKSWQVEINNK 100

[Close]
BLAST of MS024435 vs. NCBI nr
Match: XP_023552029.1 (pathogen-related protein-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 81.3 bits (199), Expect = 3.8e-12
Identity = 44/82 (53.66%), Postives = 50/82 (60.98%), Query Frame = 0 

Query: 1  MESINNVVNEGTSIATNILPDKFRASLHLEDPTVE--------------------MEVWP 60
          ME +NN+    +  A  ++PDKFRA LHLE PTVE                     +VWP
Sbjct: 1  MEGMNNITKGSSIGAHGVVPDKFRAKLHLEAPTVEWRYGKPPTYESANHLFEEGRTKVWP 60

Query: 61 KGSLEETVQNAVKSWQVEINNK 63
          KGSLEETVQNAVKSWQVEINNK
Sbjct: 61 KGSLEETVQNAVKSWQVEINNK 82

[Close]
BLAST of MS024435 vs. ExPASy TrEMBL
Match: A0A6J1CNV1 (pathogen-related protein-like OS=Momordica charantia OX=3673 GN=LOC111012819 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.2e-21
Identity = 59/82 (71.95%), Postives = 61/82 (74.39%), Query Frame = 0 

Query: 1  MESINNVVNEGTSIATNILPDKFRASLHLEDPTVE--------------------MEVWP 60
          MESINNVVNEGTSIATNILPDKFRASLHLEDPT+E                     +VWP
Sbjct: 1  MESINNVVNEGTSIATNILPDKFRASLHLEDPTIEWRYGKPPSYEIVDHLFEEGRTKVWP 60

Query: 61 KGSLEETVQNAVKSWQVEINNK 63
          KGSLEETVQNAVKSWQVEINNK
Sbjct: 61 KGSLEETVQNAVKSWQVEINNK 82

[Close]
BLAST of MS024435 vs. ExPASy TrEMBL
Match: A0A6J1CLT6 (pathogen-related protein-like OS=Momordica charantia OX=3673 GN=LOC111012791 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.0e-14
Identity = 50/83 (60.24%), Postives = 54/83 (65.06%), Query Frame = 0 

Query: 1  MESINNVVNEG-TSIATNILPDKFRASLHLEDPTVE--------------------MEVW 60
          MESIN  + +G +SI TNILPDKFRASLHLE PTVE                     +VW
Sbjct: 1  MESINKAMAKGSSSIGTNILPDKFRASLHLEHPTVEWRYGKPPSYEAANKLFEEGRTQVW 60

Query: 61 PKGSLEETVQNAVKSWQVEINNK 63
          PKGSLEETVQN VKSWQ EINNK
Sbjct: 61 PKGSLEETVQNTVKSWQSEINNK 83

[Close]
BLAST of MS024435 vs. ExPASy TrEMBL
Match: A0A6J1EZG3 (pathogen-related protein-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437627 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.7e-13
Identity = 49/83 (59.04%), Postives = 56/83 (67.47%), Query Frame = 0 

Query: 1  MESINNVVNEGTSIATN-ILPDKFRASLHLEDPTVE--------------------MEVW 60
          ME INN V +G+SI T+ ++PDKFRA+LHLE PTVE                     +VW
Sbjct: 1  MEGINN-VTKGSSIGTHGVVPDKFRANLHLEAPTVEWRYGKPPTYESANQLFEEGRSKVW 60

Query: 61 PKGSLEETVQNAVKSWQVEINNK 63
          PKGSLEETVQNAVKSWQVEINNK
Sbjct: 61 PKGSLEETVQNAVKSWQVEINNK 82

[Close]
BLAST of MS024435 vs. ExPASy TrEMBL
Match: A0A6J1CMD2 (pathogen-related protein-like OS=Momordica charantia OX=3673 GN=LOC111012790 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 5.4e-12
Identity = 45/83 (54.22%), Postives = 53/83 (63.86%), Query Frame = 0 

Query: 1  MESINNVVNEG-TSIATNILPDKFRASLHLEDPTVE--------------------MEVW 60
          MESIN  + +G +SI TNILPDK RASLHL+ PTVE                     +VW
Sbjct: 1  MESINKTMAKGSSSIGTNILPDKLRASLHLDHPTVEWRYGKPPSYEAANKLFEEGRTKVW 60

Query: 61 PKGSLEETVQNAVKSWQVEINNK 63
          PKGSLEE VQNA KSWQ+E+N+K
Sbjct: 61 PKGSLEEKVQNAAKSWQMEMNHK 83

[Close]
BLAST of MS024435 vs. ExPASy TrEMBL
Match: A0A6J1J8C9 (pathogen-related protein-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482668 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 7.0e-12
Identity = 43/74 (58.11%), Postives = 50/74 (67.57%), Query Frame = 0 

Query: 10 EGTSIAT-NILPDKFRASLHLEDPTVE--------------------MEVWPKGSLEETV 63
          EG+ I T ++LPDK+RA+LHLEDPTV+                     +VWPKGSLEETV
Sbjct: 6  EGSKIDTHSVLPDKYRANLHLEDPTVQWRYGKLPTYESANQLFEEGRTKVWPKGSLEETV 65

[Close]
BLAST of MS024435 vs. TAIR 10
Match: AT1G78780.2 (pathogenesis-related family protein )

HSP 1 Score: 47.0 bits (110), Expect = 7.4e-06
Identity = 18/28 (64.29%), Postives = 26/28 (92.86%), Query Frame = 0 

Query: 35 EMEVWPKGSLEETVQNAVKSWQVEINNK 63
          + +VWP+GSLEETVQNA+KSW++E ++K
Sbjct: 41 QTKVWPEGSLEETVQNAIKSWEMEFSHK 68

[Close]
BLAST of MS024435 vs. TAIR 10
Match: AT1G78780.4 (pathogenesis-related family protein )

HSP 1 Score: 47.0 bits (110), Expect = 7.4e-06
Identity = 18/28 (64.29%), Postives = 26/28 (92.86%), Query Frame = 0 

Query: 35 EMEVWPKGSLEETVQNAVKSWQVEINNK 63
          + +VWP+GSLEETVQNA+KSW++E ++K
Sbjct: 41 QTKVWPEGSLEETVQNAIKSWEMEFSHK 68

The following BLAST results are available for this feature:
BLAST of MS024435 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022142782.14.5e-2171.95pathogen-related protein-like [Momordica charantia][more]
XP_022142750.14.1e-1460.24pathogen-related protein-like [Momordica charantia][more]
XP_022931450.13.4e-1359.04pathogen-related protein-like isoform X1 [Cucurbita moschata][more]
KAG6577037.11.3e-1254.88hypothetical protein SDJN03_24611, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023552029.13.8e-1253.66pathogen-related protein-like [Cucurbita pepo subsp. pepo][more]
BLAST of MS024435 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS024435 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CNV12.2e-2171.95pathogen-related protein-like OS=Momordica charantia OX=3673 GN=LOC111012819 PE=... [more]
A0A6J1CLT62.0e-1460.24pathogen-related protein-like OS=Momordica charantia OX=3673 GN=LOC111012791 PE=... [more]
A0A6J1EZG31.7e-1359.04pathogen-related protein-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1CMD25.4e-1254.22pathogen-related protein-like OS=Momordica charantia OX=3673 GN=LOC111012790 PE=... [more]
A0A6J1J8C97.0e-1258.11pathogen-related protein-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC11148... [more]
BLAST of MS024435 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G78780.27.4e-0664.29pathogenesis-related family protein [more]
AT1G78780.47.4e-0664.29pathogenesis-related family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS024435.1MS024435.1mRNA