MS024432 (gene) Bitter gourd (TR) v1

Overview


Name	MS024432
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	cold-responsive protein kinase 1-like
Location	scaffold66: 409204 .. 409473 (-)
RNA-Seq Expression	MS024432
Synteny	MS024432

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAAAACTTCGGCCATCTATGTCGACCGTCGTGAAGATGCTTACAGGTGACATTGATATATCTGATCAAACAATATCTAGACCAGGAATGCTTTCAGAGTTCATGCTACGGAAAGATGTACTAGCCAAGAAAGGCGAGTCCGATTTGAAGCTTGCATCAACAACTGAAGACTCGGGAAAGCCAATTGATTCAACTTCATCATCAGGGTACATGGATACCTCATTTGCAACCATGACCTTCAATTCGATATTTGATCGTAGTAACTGA

mRNA sequence

ATGCCAAAACTTCGGCCATCTATGTCGACCGTCGTGAAGATGCTTACAGGTGACATTGATATATCTGATCAAACAATATCTAGACCAGGAATGCTTTCAGAGTTCATGCTACGGAAAGATGTACTAGCCAAGAAAGGCGAGTCCGATTTGAAGCTTGCATCAACAACTGAAGACTCGGGAAAGCCAATTGATTCAACTTCATCATCAGGGTACATGGATACCTCATTTGCAACCATGACCTTCAATTCGATATTTGATCGTAGTAACTGA

Coding sequence (CDS)

ATGCCAAAACTTCGGCCATCTATGTCGACCGTCGTGAAGATGCTTACAGGTGACATTGATATATCTGATCAAACAATATCTAGACCAGGAATGCTTTCAGAGTTCATGCTACGGAAAGATGTACTAGCCAAGAAAGGCGAGTCCGATTTGAAGCTTGCATCAACAACTGAAGACTCGGGAAAGCCAATTGATTCAACTTCATCATCAGGGTACATGGATACCTCATTTGCAACCATGACCTTCAATTCGATATTTGATCGTAGTAACTGA

Protein sequence

MPKLRPSMSTVVKMLTGDIDISDQTISRPGMLSEFMLRKDVLAKKGESDLKLASTTEDSGKPIDSTSSSGYMDTSFATMTFNSIFDRSN

Homology

[Close]

BLAST of MS024432 vs. NCBI nr
Match: XP_022142818.1 (cold-responsive protein kinase 1-like isoform X1 [Momordica charantia])

HSP 1 Score: 169.9 bits (429), Expect = 1.0e-38
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1   MPKLRPSMSTVVKMLTGDIDISDQTISRPGMLSEFMLRKDVLAKKGESDLKLASTTEDSG 60
           MPKLRPSMSTVVKMLTGDIDISDQTISRPGMLSEFMLRKDVLAKKGESDLKLASTTEDSG
Sbjct: 310 MPKLRPSMSTVVKMLTGDIDISDQTISRPGMLSEFMLRKDVLAKKGESDLKLASTTEDSG 369

Query: 61  KPIDSTSSSGYMDTSFATMTFNSIFDRSN 90
           KPIDSTSSSGYMDTSFATMTFNSIFDRSN
Sbjct: 370 KPIDSTSSSGYMDTSFATMTFNSIFDRSN 398

[Close]

BLAST of MS024432 vs. NCBI nr
Match: XP_022142819.1 (cold-responsive protein kinase 1-like isoform X2 [Momordica charantia])

HSP 1 Score: 169.9 bits (429), Expect = 1.0e-38
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1   MPKLRPSMSTVVKMLTGDIDISDQTISRPGMLSEFMLRKDVLAKKGESDLKLASTTEDSG 60
           MPKLRPSMSTVVKMLTGDIDISDQTISRPGMLSEFMLRKDVLAKKGESDLKLASTTEDSG
Sbjct: 309 MPKLRPSMSTVVKMLTGDIDISDQTISRPGMLSEFMLRKDVLAKKGESDLKLASTTEDSG 368

Query: 61  KPIDSTSSSGYMDTSFATMTFNSIFDRSN 90
           KPIDSTSSSGYMDTSFATMTFNSIFDRSN
Sbjct: 369 KPIDSTSSSGYMDTSFATMTFNSIFDRSN 397

[Close]

BLAST of MS024432 vs. NCBI nr
Match: XP_038883237.1 (cold-responsive protein kinase 1-like isoform X1 [Benincasa hispida] >XP_038883244.1 cold-responsive protein kinase 1-like isoform X1 [Benincasa hispida] >XP_038883253.1 cold-responsive protein kinase 1-like isoform X1 [Benincasa hispida] >XP_038883260.1 cold-responsive protein kinase 1-like isoform X1 [Benincasa hispida] >XP_038883266.1 cold-responsive protein kinase 1-like isoform X1 [Benincasa hispida] >XP_038883274.1 cold-responsive protein kinase 1-like isoform X1 [Benincasa hispida] >XP_038883278.1 cold-responsive protein kinase 1-like isoform X1 [Benincasa hispida])

HSP 1 Score: 145.6 bits (366), Expect = 2.1e-31
Identity = 78/89 (87.64%), Postives = 81/89 (91.01%), Query Frame = 0


Query: 1   MPKLRPSMSTVVKMLTGDIDISDQTISRPGMLSEFMLRKDVLAKKGESDLKLASTTEDSG 60
           MPKLRPSM+TVVKMLTGDIDISDQ ISRPGMLSEFMLRKDVL KKGE      STTEDSG
Sbjct: 327 MPKLRPSMATVVKMLTGDIDISDQAISRPGMLSEFMLRKDVLCKKGE------STTEDSG 386

Query: 61  KPIDSTSSSGYMDTSFATMTFNSIFDRSN 90
           KPIDSTSSSGYMDTS+AT+TFNSIFDRSN
Sbjct: 387 KPIDSTSSSGYMDTSYATITFNSIFDRSN 409

[Close]

BLAST of MS024432 vs. NCBI nr
Match: XP_038883287.1 (cold-responsive protein kinase 1-like isoform X2 [Benincasa hispida])

HSP 1 Score: 145.6 bits (366), Expect = 2.1e-31
Identity = 78/89 (87.64%), Postives = 81/89 (91.01%), Query Frame = 0


Query: 1   MPKLRPSMSTVVKMLTGDIDISDQTISRPGMLSEFMLRKDVLAKKGESDLKLASTTEDSG 60
           MPKLRPSM+TVVKMLTGDIDISDQ ISRPGMLSEFMLRKDVL KKGE      STTEDSG
Sbjct: 326 MPKLRPSMATVVKMLTGDIDISDQAISRPGMLSEFMLRKDVLCKKGE------STTEDSG 385

Query: 61  KPIDSTSSSGYMDTSFATMTFNSIFDRSN 90
           KPIDSTSSSGYMDTS+AT+TFNSIFDRSN
Sbjct: 386 KPIDSTSSSGYMDTSYATITFNSIFDRSN 408

[Close]

BLAST of MS024432 vs. NCBI nr
Match: XP_038883295.1 (cold-responsive protein kinase 1-like isoform X3 [Benincasa hispida])

HSP 1 Score: 145.6 bits (366), Expect = 2.1e-31
Identity = 78/89 (87.64%), Postives = 81/89 (91.01%), Query Frame = 0


Query: 1   MPKLRPSMSTVVKMLTGDIDISDQTISRPGMLSEFMLRKDVLAKKGESDLKLASTTEDSG 60
           MPKLRPSM+TVVKMLTGDIDISDQ ISRPGMLSEFMLRKDVL KKGE      STTEDSG
Sbjct: 322 MPKLRPSMATVVKMLTGDIDISDQAISRPGMLSEFMLRKDVLCKKGE------STTEDSG 381

Query: 61  KPIDSTSSSGYMDTSFATMTFNSIFDRSN 90
           KPIDSTSSSGYMDTS+AT+TFNSIFDRSN
Sbjct: 382 KPIDSTSSSGYMDTSYATITFNSIFDRSN 404

[Close]

BLAST of MS024432 vs. ExPASy Swiss-Prot
Match: Q93YN1 (Cold-responsive protein kinase 1 OS=Arabidopsis thaliana OX=3702 GN=CRPK1 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.8e-06
Identity = 24/35 (68.57%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 2   PKLRPSMSTVVKMLTGDIDISDQTISRPGMLSEFM 37
           PKLRPSMSTVV++LTG+ DI  + ISRPG++S+FM
Sbjct: 301 PKLRPSMSTVVRLLTGEKDIDYKKISRPGLISDFM 335

[Close]

BLAST of MS024432 vs. ExPASy TrEMBL
Match: A0A6J1CMK7 (cold-responsive protein kinase 1-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111012847 PE=3 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 4.9e-39
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1   MPKLRPSMSTVVKMLTGDIDISDQTISRPGMLSEFMLRKDVLAKKGESDLKLASTTEDSG 60
           MPKLRPSMSTVVKMLTGDIDISDQTISRPGMLSEFMLRKDVLAKKGESDLKLASTTEDSG
Sbjct: 309 MPKLRPSMSTVVKMLTGDIDISDQTISRPGMLSEFMLRKDVLAKKGESDLKLASTTEDSG 368

Query: 61  KPIDSTSSSGYMDTSFATMTFNSIFDRSN 90
           KPIDSTSSSGYMDTSFATMTFNSIFDRSN
Sbjct: 369 KPIDSTSSSGYMDTSFATMTFNSIFDRSN 397

[Close]

BLAST of MS024432 vs. ExPASy TrEMBL
Match: A0A6J1CP84 (cold-responsive protein kinase 1-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111012847 PE=3 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 4.9e-39
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1   MPKLRPSMSTVVKMLTGDIDISDQTISRPGMLSEFMLRKDVLAKKGESDLKLASTTEDSG 60
           MPKLRPSMSTVVKMLTGDIDISDQTISRPGMLSEFMLRKDVLAKKGESDLKLASTTEDSG
Sbjct: 310 MPKLRPSMSTVVKMLTGDIDISDQTISRPGMLSEFMLRKDVLAKKGESDLKLASTTEDSG 369

Query: 61  KPIDSTSSSGYMDTSFATMTFNSIFDRSN 90
           KPIDSTSSSGYMDTSFATMTFNSIFDRSN
Sbjct: 370 KPIDSTSSSGYMDTSFATMTFNSIFDRSN 398

[Close]

BLAST of MS024432 vs. ExPASy TrEMBL
Match: A0A6J1FTC0 (cold-responsive protein kinase 1-like OS=Cucurbita moschata OX=3662 GN=LOC111447115 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 7.1e-30
Identity = 73/89 (82.02%), Postives = 79/89 (88.76%), Query Frame = 0


Query: 1   MPKLRPSMSTVVKMLTGDIDISDQTISRPGMLSEFMLRKDVLAKKGESDLKLASTTEDSG 60
           MP LRPSMSTVVKMLTGDIDI+DQTISRPGMLSEFML KDVL KK E + KL STTEDSG
Sbjct: 308 MPTLRPSMSTVVKMLTGDIDITDQTISRPGMLSEFMLPKDVLGKKAEPNSKLTSTTEDSG 367

Query: 61  KPIDSTSSSGYMDTSFATMTFNSIFDRSN 90
           K  +STSSSG+MDTS+ T+TFNSIFDRSN
Sbjct: 368 KQSESTSSSGFMDTSYGTITFNSIFDRSN 396

[Close]

BLAST of MS024432 vs. ExPASy TrEMBL
Match: A0A6J1IW33 (cold-responsive protein kinase 1-like OS=Cucurbita maxima OX=3661 GN=LOC111480449 PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 9.3e-30
Identity = 72/89 (80.90%), Postives = 79/89 (88.76%), Query Frame = 0


Query: 1   MPKLRPSMSTVVKMLTGDIDISDQTISRPGMLSEFMLRKDVLAKKGESDLKLASTTEDSG 60
           MP LRPSMSTVVKMLTGDIDI+DQTIS+PGMLSEFMLRKDVL KK E + KL STTED G
Sbjct: 308 MPNLRPSMSTVVKMLTGDIDITDQTISKPGMLSEFMLRKDVLGKKAEPNSKLTSTTEDLG 367

Query: 61  KPIDSTSSSGYMDTSFATMTFNSIFDRSN 90
           K  +STSSSG+MDTS+ T+TFNSIFDRSN
Sbjct: 368 KQSESTSSSGFMDTSYGTITFNSIFDRSN 396

[Close]

BLAST of MS024432 vs. ExPASy TrEMBL
Match: A0A0A0KVI8 (Protein kinase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G082350 PE=3 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.5e-29
Identity = 74/89 (83.15%), Postives = 80/89 (89.89%), Query Frame = 0


Query: 1   MPKLRPSMSTVVKMLTGDIDISDQTISRPGMLSEFMLRKDVLAKKGESDLKLASTTEDSG 60
           MPKLRPSM+TVVKMLTG+IDISDQTISRPGMLSEFMLRKDVL KKGE      ST EDSG
Sbjct: 320 MPKLRPSMATVVKMLTGEIDISDQTISRPGMLSEFMLRKDVLCKKGE------STAEDSG 379

Query: 61  KPIDSTSSSGYMDTSFATMTFNSIFDRSN 90
           KPIDSTSSS +MDTS+AT+TF+SIFDRSN
Sbjct: 380 KPIDSTSSSRHMDTSYATITFDSIFDRSN 402

[Close]

BLAST of MS024432 vs. TAIR 10
Match: AT1G16670.1 (Protein kinase superfamily protein )

HSP 1 Score: 53.1 bits (126), Expect = 1.3e-07
Identity = 24/35 (68.57%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 2   PKLRPSMSTVVKMLTGDIDISDQTISRPGMLSEFM 37
           PKLRPSMSTVV++LTG+ DI  + ISRPG++S+FM
Sbjct: 301 PKLRPSMSTVVRLLTGEKDIDYKKISRPGLISDFM 335

The following BLAST results are available for this feature:

BLAST of MS024432 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022142818.1	1.0e-38	100.00	cold-responsive protein kinase 1-like isoform X1 [Momordica charantia]	[more]
XP_022142819.1	1.0e-38	100.00	cold-responsive protein kinase 1-like isoform X2 [Momordica charantia]	[more]
XP_038883237.1	2.1e-31	87.64	cold-responsive protein kinase 1-like isoform X1 [Benincasa hispida] >XP_0388832...	[more]
XP_038883287.1	2.1e-31	87.64	cold-responsive protein kinase 1-like isoform X2 [Benincasa hispida]	[more]
XP_038883295.1	2.1e-31	87.64	cold-responsive protein kinase 1-like isoform X3 [Benincasa hispida]	[more]

BLAST of MS024432 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93YN1	1.8e-06	68.57	Cold-responsive protein kinase 1 OS=Arabidopsis thaliana OX=3702 GN=CRPK1 PE=1 S...	[more]

BLAST of MS024432 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CMK7	4.9e-39	100.00	cold-responsive protein kinase 1-like isoform X2 OS=Momordica charantia OX=3673 ...	[more]
A0A6J1CP84	4.9e-39	100.00	cold-responsive protein kinase 1-like isoform X1 OS=Momordica charantia OX=3673 ...	[more]
A0A6J1FTC0	7.1e-30	82.02	cold-responsive protein kinase 1-like OS=Cucurbita moschata OX=3662 GN=LOC111447...	[more]
A0A6J1IW33	9.3e-30	80.90	cold-responsive protein kinase 1-like OS=Cucurbita maxima OX=3661 GN=LOC11148044...	[more]
A0A0A0KVI8	3.5e-29	83.15	Protein kinase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G082...	[more]

BLAST of MS024432 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G16670.1	1.3e-07	68.57	Protein kinase superfamily protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS024432.1	MS024432.1	mRNA