MS024430 (gene) Bitter gourd (TR) v1

Overview


Name	MS024430
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	NAC89
Location	scaffold66: 186466 .. 187295 (+)
RNA-Seq Expression	MS024430
Synteny	MS024430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAAGCGAATTTTCCGGCGAGTCGGAACTCGTGCATAACCCAGTTGGTTTTTTGCCCTTTGGGGGCTCTCCCTGTGTAGAAAACCAGGGTTTTCTTCATGCCCAGTGTGGACCGGGTTTTGGAGCTCAAGATTTCCCGGTCTTTTCCGGTCGCCTTCCAGTACCCGGCTTCCGTCGCCCGGTTCGTTCGTAGACCGGTCGGGTACTTCCGGTCTCTCAGGCTGAAGAAGTACCACTCCTTCTCTCCCATCGAAGCTTTCTCTGTCAATCAAAACCATCACACTTTTCAATTTTCTATACCATTTTTAAAATTGGTTTCTCTTTTTTCTTTTTTCTCTTAACGTTTCCAAAATTAATCGAAAAATTTTAAAGTAGTTTTTAGAAATTTAGCAAAACTTCAAATAGGGTTTTAAAGAATACTTGAAAATCAAGCATAAAATAACTAATTTTATGAGTTCAAATCTCTCTGAAAAGACGTACAATGTAATTTCAAAACTTTAAGTTGATGAATTAGGATAAATTTAAAGACTGACCGGGGAGGTCCCAGGGCTCGGACTTATTGAGATCGACTTGGGCGATTGCGGGGGAGGAGAAGTGGGAGTCGAGGACCTTCTTCAGGAGGTAATGGGCAATGAGTTCTTCGTCGGTGGGGTGGAACCGGAATCCCGGCGGGAGGTAGCTGTCGGACCTCCGGTGGCCGCTGCCGCTCTCATCCATCTGGGTCATTGATCGGAGGAGAGAGAGAGAGAGAAAGAGAGATAGTGAAAGTGAGATGTGATCAAAATCCCATTTTATATATTAAGTTGGAGTTGTACCTTATGCATTTGA

mRNA sequence

ATGGTAAGCGAATTTTCCGGCGAGTCGGAACTCGTGCATAACCCAGTTGGTTTTTTGCCCTTTGGGGGCTCTCCCTGTGTAGAAAACCAGGGTTTTCTTCATGCCCAGTGTGGACCGGGTTTTGGAGCTCAAGATTTCCCGGTCTTTTCCGGTCGCCTTCCAGTACCCGGCTTCCGTCGCCCGGTCCCAGGGCTCGGACTTATTGAGATCGACTTGGGCGATTGCGGGGGAGGAGAAGTGGGAGTCGAGGACCTTCTTCAGGAGGTAATGGGCAATGAGTTCTTCGTCGGTGGGGTGGAACCGGAATCCCGGCGGGAGGTAGCTGTCGGACCTCCGGTGGCCGCTGCCGCTCTCATCCATCTGGGTCATTGATCGGAGGAGAGAGAGAGAGAGAAAGAGAGATAGTGAAAGTGAGATGTGATCAAAATCCCATTTTATATATTAAGTTGGAGTTGTACCTTATGCATTTGA

Coding sequence (CDS)

ATGGTAAGCGAATTTTCCGGCGAGTCGGAACTCGTGCATAACCCAGTTGGTTTTTTGCCCTTTGGGGGCTCTCCCTGTGTAGAAAACCAGGGTTTTCTTCATGCCCAGTGTGGACCGGGTTTTGGAGCTCAAGATTTCCCGGTCTTTTCCGGTCGCCTTCCAGTACCCGGCTTCCGTCGCCCGGTCCCAGGGCTCGGACTTATTGAGATCGACTTGGGCGATTGCGGGGGAGGAGAAGTGGGAGTCGAGGACCTTCTTCAGGAGGTAATGGGCAATGAGTTCTTCGTCGGTGGGGTGGAACCGGAATCCCGGCGGGAGGTAGCTGTCGGACCTCCGGTGGCCGCTGCCGCTCTCATCCATCTGGGTCATTGATCGGAGGAGAGAGAGAGAGAGAAAGAGAGATAGTGAAAGTGAGATGTGATCAAAATCCCATTTTATATATTAAGTTGGAGTTGTACCTTATGCATTTGA

Protein sequence

MVSEFSGESELVHNPVGFLPFGGSPCVENQGFLHAQCGPGFGAQDFPVFSGRLPVPGFRRPVPGLGLIEIDLGDCGGGEVGVEDLLQEVMGNEFFVGGVEPESRREVAVGPPVAAAALIHLGHUSEEREREKERUUKUDVIKIPFYILSWSCTLCI

Homology

[Close]

BLAST of MS024430 vs. NCBI nr
Match: ACR38550.1 (unknown [Zea mays])

HSP 1 Score: 71.2 bits (173), Expect = 8.7e-09
Identity = 51/130 (39.23%), Postives = 63/130 (48.46%), Query Frame = 0


Query: 8   ESELVHNPVGFLPFGGSPCVENQGFLHAQCGPGFGAQDFPVFSGRLPVP----------- 67
           E+ LVH+PVG L  GG+P VE +  LH    PG  A   PV +G LPVP           
Sbjct: 122 EAVLVHDPVGALALGGAPGVEYERLLHPD-DPGPMAH-LPVLAGGLPVPSRRGAVGASAV 181

Query: 68  --------------------GFRRPVPGLGLIEIDLGDCGGGEVGVEDLLQEVMGNEFFV 107
                               G R  VPGL L+++DLGD    E   E+L  EV+ +E  V
Sbjct: 182 GVLAVEAAEEVPLGVAGAEAGARGQVPGLELVQVDLGDGVDLERAAENLALEVVRHELLV 241

[Close]

BLAST of MS024430 vs. NCBI nr
Match: RDX88631.1 (hypothetical protein CR513_29754, partial [Mucuna pruriens])

HSP 1 Score: 70.9 bits (172), Expect = 1.1e-08
Identity = 44/110 (40.00%), Postives = 64/110 (58.18%), Query Frame = 0


Query: 5   FSGESELVHNPVGFLPFGGSPCVENQGFLHAQCGPGFGAQDFPVFSGRLPVPGFRRP--- 64
           + GE+ LVH+P+GFL FG    V+NQ FL++     F   +  + SGRLPVPG  RP   
Sbjct: 18  YVGETILVHDPIGFLSFGCFSRVKNQRFLNSN---RFRFTNRFIRSGRLPVPGSGRPIRP 77

Query: 65  ----VPGLGLIEIDLGDCGGGEVGVEDLLQEVMGNEFFVGGVEPESRREV 108
               VP + L+E+D  +    ++       +V+ +EFF+GGVE ESR +V
Sbjct: 78  RTVRVPWVVLVEVDFSNDRNRDLLRGAFAAKVVDDEFFIGGVESESRGQV 124

[Close]

BLAST of MS024430 vs. NCBI nr
Match: RDY10663.1 (hypothetical protein CR513_04775, partial [Mucuna pruriens])

HSP 1 Score: 66.6 bits (161), Expect = 2.1e-07
Identity = 40/111 (36.04%), Postives = 60/111 (54.05%), Query Frame = 0


Query: 3   SEFSGESELVHNPVGFLPFGGSPCVENQGFLHAQCGPGFGAQDFPVFSGRLPVPGFRR-- 62
           S + G++ LVH+P+GF+PFGG  CV++QGFL       FG  +  +  G LPVPG  R  
Sbjct: 8   SIYIGKTILVHDPIGFVPFGGFSCVKHQGFLDPN---RFGVTNGLIRPGCLPVPGSCRPV 67

Query: 63  --------PVPGLGLIEIDLGDCGGGEVGVEDLLQEVMGNEFFVGGVEPES 104
                   PVP +  +E++ G+ G G+        EV+ +E  V  +E E+
Sbjct: 68  RPGTVRVLPVPWIVFVEVNFGNDGNGDGLRSAFAAEVVHHELLVRWMESEA 115

[Close]

BLAST of MS024430 vs. NCBI nr
Match: ACR34846.1 (unknown [Zea mays])

HSP 1 Score: 65.1 bits (157), Expect = 6.2e-07
Identity = 46/133 (34.59%), Postives = 60/133 (45.11%), Query Frame = 0


Query: 4   EFSGESELVHNPVGFLPFGGSPCVENQGFLHAQCGPGFGAQDFPVFSGRLPVPGFRRP-- 63
           E   E+ LVH+P G L  G  P VE++  L A        +D PV +  LPVPG R P  
Sbjct: 241 ELGVEAVLVHDPSGLLSPGRPPRVEDERLLGAD--ERLAPEDVPVLARGLPVPGLRGPVG 300

Query: 64  ---------------------------VPGLGLIEIDLGDCGGGEVGVEDLLQEVMGNEF 108
                                      VPGL L+E+ LGD   GE GV  L  +V+ +E 
Sbjct: 301 PQPRRVLAVLEAEEVPLLLPHPRQRWQVPGLALVEVGLGDGERGEAGVGGLAGQVVRDEL 360

[Close]

BLAST of MS024430 vs. NCBI nr
Match: KAB8092671.1 (hypothetical protein EE612_019006, partial [Oryza sativa] >BAS85333.1 Os03g0624700, partial [Oryza sativa Japonica Group])

HSP 1 Score: 55.5 bits (132), Expect = 4.9e-04
Identity = 46/158 (29.11%), Postives = 57/158 (36.08%), Query Frame = 0


Query: 8   ESELVHNPVGFLPFGGSPCVENQGFLHAQCGPGFGAQDFPVFSGRLPVPGFR-------- 67
           E  LVH+P G    G  P VE+Q  LHA  G     +D  V +G LPV G R        
Sbjct: 1   EPVLVHHPAGLGALGRPPAVEHQRLLHA--GERAAVEDLLVLAGGLPVAGVRGAVGADPR 60

Query: 68  ---------------------------------------------------RPVPGLGLI 107
                                                                VP L L+
Sbjct: 61  RVLAVAHAEEVPLLLPHACLACISHPSTLRSCVRTIDQFIHLYVCICSRLTGEVPWLALV 120

[Close]

BLAST of MS024430 vs. ExPASy TrEMBL
Match: C4JBK0 (Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 4.2e-09
Identity = 51/130 (39.23%), Postives = 63/130 (48.46%), Query Frame = 0


Query: 8   ESELVHNPVGFLPFGGSPCVENQGFLHAQCGPGFGAQDFPVFSGRLPVP----------- 67
           E+ LVH+PVG L  GG+P VE +  LH    PG  A   PV +G LPVP           
Sbjct: 122 EAVLVHDPVGALALGGAPGVEYERLLHPD-DPGPMAH-LPVLAGGLPVPSRRGAVGASAV 181

Query: 68  --------------------GFRRPVPGLGLIEIDLGDCGGGEVGVEDLLQEVMGNEFFV 107
                               G R  VPGL L+++DLGD    E   E+L  EV+ +E  V
Sbjct: 182 GVLAVEAAEEVPLGVAGAEAGARGQVPGLELVQVDLGDGVDLERAAENLALEVVRHELLV 241

[Close]

BLAST of MS024430 vs. ExPASy TrEMBL
Match: A0A371GDL2 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_29754 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 5.5e-09
Identity = 44/110 (40.00%), Postives = 64/110 (58.18%), Query Frame = 0


Query: 5   FSGESELVHNPVGFLPFGGSPCVENQGFLHAQCGPGFGAQDFPVFSGRLPVPGFRRP--- 64
           + GE+ LVH+P+GFL FG    V+NQ FL++     F   +  + SGRLPVPG  RP   
Sbjct: 18  YVGETILVHDPIGFLSFGCFSRVKNQRFLNSN---RFRFTNRFIRSGRLPVPGSGRPIRP 77

Query: 65  ----VPGLGLIEIDLGDCGGGEVGVEDLLQEVMGNEFFVGGVEPESRREV 108
               VP + L+E+D  +    ++       +V+ +EFF+GGVE ESR +V
Sbjct: 78  RTVRVPWVVLVEVDFSNDRNRDLLRGAFAAKVVDDEFFIGGVESESRGQV 124

[Close]

BLAST of MS024430 vs. ExPASy TrEMBL
Match: A0A0A9JW59 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.6e-08
Identity = 53/154 (34.42%), Postives = 65/154 (42.21%), Query Frame = 0


Query: 8   ESELVHNPVGFLPFGGSPCVENQGFLHAQ------------------------------- 67
           ES LVH+PVG L  G  P VE++  LHA                                
Sbjct: 87  ESVLVHDPVGPLSLGRPPGVEDERLLHADGLAAVVDLAVLARGLPVSPWSGAVGPVAGPA 146

Query: 68  CGPGFGAQDFPVFSG-RLPV------PGFRRPVPGLGLIEIDLGDCGGGEVGVEDLLQEV 124
             PG GA D  V +G  +P+       G    VPGL  +E+DLGD    E   ED   EV
Sbjct: 147 AAPGAGAGDLAVEAGEEVPLGVAAADAGEGGEVPGLEAVEVDLGDGVDAEAAAEDAAAEV 206

[Close]

BLAST of MS024430 vs. ExPASy TrEMBL
Match: A0A371I6J3 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_04775 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.0e-07
Identity = 40/111 (36.04%), Postives = 60/111 (54.05%), Query Frame = 0


Query: 3   SEFSGESELVHNPVGFLPFGGSPCVENQGFLHAQCGPGFGAQDFPVFSGRLPVPGFRR-- 62
           S + G++ LVH+P+GF+PFGG  CV++QGFL       FG  +  +  G LPVPG  R  
Sbjct: 8   SIYIGKTILVHDPIGFVPFGGFSCVKHQGFLDPN---RFGVTNGLIRPGCLPVPGSCRPV 67

Query: 63  --------PVPGLGLIEIDLGDCGGGEVGVEDLLQEVMGNEFFVGGVEPES 104
                   PVP +  +E++ G+ G G+        EV+ +E  V  +E E+
Sbjct: 68  RPGTVRVLPVPWIVFVEVNFGNDGNGDGLRSAFAAEVVHHELLVRWMESEA 115

[Close]

BLAST of MS024430 vs. ExPASy TrEMBL
Match: C4J0Z6 (Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.0e-07
Identity = 46/133 (34.59%), Postives = 60/133 (45.11%), Query Frame = 0


Query: 4   EFSGESELVHNPVGFLPFGGSPCVENQGFLHAQCGPGFGAQDFPVFSGRLPVPGFRRP-- 63
           E   E+ LVH+P G L  G  P VE++  L A        +D PV +  LPVPG R P  
Sbjct: 241 ELGVEAVLVHDPSGLLSPGRPPRVEDERLLGAD--ERLAPEDVPVLARGLPVPGLRGPVG 300

Query: 64  ---------------------------VPGLGLIEIDLGDCGGGEVGVEDLLQEVMGNEF 108
                                      VPGL L+E+ LGD   GE GV  L  +V+ +E 
Sbjct: 301 PQPRRVLAVLEAEEVPLLLPHPRQRWQVPGLALVEVGLGDGERGEAGVGGLAGQVVRDEL 360

The following BLAST results are available for this feature:

BLAST of MS024430 vs. NCBI nr


Match Name	E-value	Identity	Description
ACR38550.1	8.7e-09	39.23	unknown [Zea mays]	[more]
RDX88631.1	1.1e-08	40.00	hypothetical protein CR513_29754, partial [Mucuna pruriens]	[more]
RDY10663.1	2.1e-07	36.04	hypothetical protein CR513_04775, partial [Mucuna pruriens]	[more]
ACR34846.1	6.2e-07	34.59	unknown [Zea mays]	[more]
KAB8092671.1	4.9e-04	29.11	hypothetical protein EE612_019006, partial [Oryza sativa] >BAS85333.1 Os03g06247...	[more]

BLAST of MS024430 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS024430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
C4JBK0	4.2e-09	39.23	Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1	[more]
A0A371GDL2	5.5e-09	40.00	Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_29754 P...	[more]
A0A0A9JW59	1.6e-08	34.42	Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1	[more]
A0A371I6J3	1.0e-07	36.04	Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_04775 P...	[more]
C4J0Z6	3.0e-07	34.59	Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1	[more]

BLAST of MS024430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS024430.1	MS024430.1	mRNA