Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGCAATGAGGGGCGTTAGCATTGTGGCTTTTCTAGTAATTGGCGTGTGGGTGATTGCTTCAGAAAGCGGTCGTGTGGCCAGGAAGGACTTGGGCGTCGACCTTGGAGGGGTTGGCATCGGCGTCGGAACGGGAGTCGGCTTGGGCGGTGCCAGTGGCTCGGGAGCCGGAGCTGGCTCTGGCTCTGGATCTTCTTCCTCATCACACTCCTCCTCCTCCTCCTCCTCAGGCTCCGGCGGGTCCGGGTCCGGGTCCAGCGCAGGGTCCGATGCTGGTTCCTACGCTGGCTCTCGGGGAGGCTCGGGGTCTGGTGGAAGTGGGAACGGCGGTGGATCCGGGGGCGGATACGGCGAGGGTCATGGTTCTGGCGGTGGCGGCGGCGGCGGAAACTAG
mRNA sequence
ATGGGAGCAATGAGGGGCGTTAGCATTGTGGCTTTTCTAGTAATTGGCGTGTGGGTGATTGCTTCAGAAAGCGGTCGTGTGGCCAGGAAGGACTTGGGCGTCGACCTTGGAGGGGTTGGCATCGGCGTCGGAACGGGAGTCGGCTTGGGCGGTGCCAGTGGCTCGGGAGCCGGAGCTGGCTCTGGCTCTGGATCTTCTTCCTCATCACACTCCTCCTCCTCCTCCTCCTCAGGCTCCGGCGGGTCCGGGTCCGGGTCCAGCGCAGGGTCCGATGCTGGTTCCTACGCTGGCTCTCGGGGAGGCTCGGGGTCTGGTGGAAGTGGGAACGGCGGTGGATCCGGGGGCGGATACGGCGAGGGTCATGGTTCTGGCGGTGGCGGCGGCGGCGGAAACTAG
Coding sequence (CDS)
ATGGGAGCAATGAGGGGCGTTAGCATTGTGGCTTTTCTAGTAATTGGCGTGTGGGTGATTGCTTCAGAAAGCGGTCGTGTGGCCAGGAAGGACTTGGGCGTCGACCTTGGAGGGGTTGGCATCGGCGTCGGAACGGGAGTCGGCTTGGGCGGTGCCAGTGGCTCGGGAGCCGGAGCTGGCTCTGGCTCTGGATCTTCTTCCTCATCACACTCCTCCTCCTCCTCCTCCTCAGGCTCCGGCGGGTCCGGGTCCGGGTCCAGCGCAGGGTCCGATGCTGGTTCCTACGCTGGCTCTCGGGGAGGCTCGGGGTCTGGTGGAAGTGGGAACGGCGGTGGATCCGGGGGCGGATACGGCGAGGGTCATGGTTCTGGCGGTGGCGGCGGCGGCGGAAACTAG
Protein sequence
MGAMRGVSIVAFLVIGVWVIASESGRVARKDLGVDLGGVGIGVGTGVGLGGASGSGAGAGSGSGSSSSSHSSSSSSSGSGGSGSGSSAGSDAGSYAGSRGGSGSGGSGNGGGSGGGYGEGHGSGGGGGGGN
Homology
BLAST of MS024331 vs. NCBI nr
Match:
XP_022135223.1 (putative glycine-rich cell wall structural protein 1 [Momordica charantia])
HSP 1 Score: 170.6 bits (431), Expect = 8.8e-39
Identity = 130/131 (99.24%), Postives = 131/131 (100.00%), Query Frame = 0
Query: 1 MGAMRGVSIVAFLVIGVWVIASESGRVARKDLGVDLGGVGIGVGTGVGLGGASGSGAGAG 60
MGAMRGVSIVAFLVIGVWVIASESGRVARKDLGVDLGGVGIGVGTGVGLGGASGSGAGAG
Sbjct: 1 MGAMRGVSIVAFLVIGVWVIASESGRVARKDLGVDLGGVGIGVGTGVGLGGASGSGAGAG 60
Query: 61 SGSGSSSSSHSSSSSSSGSGGSGSGSSAGSDAGSYAGSRGGSGSGGSGNGGGSGGGYGEG 120
SGSGSSSSSHSSSSSSSGSGGSGSGSSAGSDAGSYAGSRGGSGSGGSGNGGGSGGGYG+G
Sbjct: 61 SGSGSSSSSHSSSSSSSGSGGSGSGSSAGSDAGSYAGSRGGSGSGGSGNGGGSGGGYGQG 120
Query: 121 HGSGGGGGGGN 132
HGSGGGGGGGN
Sbjct: 121 HGSGGGGGGGN 131
BLAST of MS024331 vs. NCBI nr
Match:
XP_004146662.1 (glycine-rich cell wall structural protein 2 [Cucumis sativus] >KGN65262.1 hypothetical protein Csa_019748 [Cucumis sativus])
HSP 1 Score: 81.6 bits (200), Expect = 5.4e-12
Identity = 89/131 (67.94%), Postives = 105/131 (80.15%), Query Frame = 0
Query: 1 MGAMRGVSIVAFLVIGVWVIASESGRVARKDLGVDLGGVGIGVGTGVGLG-GASGSGAGA 60
MG+++ + + A LV ++V++S+S RVARKDLG+DLGGVGIGVG GVG+G G SGSGAG+
Sbjct: 1 MGSLKSLVLAALLVSSLFVVSSQS-RVARKDLGLDLGGVGIGVGAGVGIGLGGSGSGAGS 60
Query: 61 GSGSGSSSSSHSSSSSSSGSGGSGSGSSAGSDAGSYAGSRGGSGSGGSGNGGGSGGGYGE 120
GSGSGS SSS SSSSSSS S SGSGS +GS+AGSYAGSR GSGSGG GG G GYG
Sbjct: 61 GSGSGSGSSSSSSSSSSSSSSSSGSGSDSGSEAGSYAGSRAGSGSGGR---GGEGSGYGG 120
Query: 121 GHGSGGGGGGG 131
G+GSG GGG G
Sbjct: 121 GYGSGYGGGHG 127
BLAST of MS024331 vs. NCBI nr
Match:
XP_020872241.1 (counting factor 45-1 [Arabidopsis lyrata subsp. lyrata])
HSP 1 Score: 79.0 bits (193), Expect = 3.5e-11
Identity = 73/107 (68.22%), Postives = 83/107 (77.57%), Query Frame = 0
Query: 1 MGAMRGVSIVAFLVIGVWVIASESGRVARKDLGVDLGGVGI--GVGTGVGLGGASGSGAG 60
M +G+ ++ LVI V+ +ES RVARKDLG+DLGG+GI GVG G+GLGG SGSGAG
Sbjct: 1 MARAQGLFLLGLLVISSLVMLTES-RVARKDLGIDLGGIGIGLGVGLGIGLGGGSGSGAG 60
Query: 61 AGSGSGSSSSSHSSSSSSSGSGGSGSGSSAGSDAGSYAGSRGGSGSG 106
AGSGSGS S S SSSSSSS S SGSG SAGS AGS+AGSR GSGSG
Sbjct: 61 AGSGSGSGSRSSSSSSSSSSSSSSGSGGSAGSSAGSFAGSRAGSGSG 106
BLAST of MS024331 vs. NCBI nr
Match:
KAG7540899.1 (hypothetical protein ISN45_Aa07g010460 [Arabidopsis thaliana x Arabidopsis arenosa])
HSP 1 Score: 79.0 bits (193), Expect = 3.5e-11
Identity = 73/107 (68.22%), Postives = 83/107 (77.57%), Query Frame = 0
Query: 1 MGAMRGVSIVAFLVIGVWVIASESGRVARKDLGVDLGGVGI--GVGTGVGLGGASGSGAG 60
M +G+ ++ LVI V+ +ES RVARKDLG+DLGG+GI GVG G+GLGG SGSGAG
Sbjct: 1 MARAQGLYLLGLLVISSLVMLTES-RVARKDLGIDLGGIGIGLGVGLGIGLGGGSGSGAG 60
Query: 61 AGSGSGSSSSSHSSSSSSSGSGGSGSGSSAGSDAGSYAGSRGGSGSG 106
AGSGSGS S S SSSSSSS S SGSG SAGS AGS+AGSR GSGSG
Sbjct: 61 AGSGSGSGSRSSSSSSSSSSSSSSGSGGSAGSSAGSFAGSRAGSGSG 106
BLAST of MS024331 vs. NCBI nr
Match:
EFH43606.1 (expressed protein, partial [Arabidopsis lyrata subsp. lyrata])
HSP 1 Score: 79.0 bits (193), Expect = 3.5e-11
Identity = 73/107 (68.22%), Postives = 83/107 (77.57%), Query Frame = 0
Query: 1 MGAMRGVSIVAFLVIGVWVIASESGRVARKDLGVDLGGVGI--GVGTGVGLGGASGSGAG 60
M +G+ ++ LVI V+ +ES RVARKDLG+DLGG+GI GVG G+GLGG SGSGAG
Sbjct: 1 MARAQGLFLLGLLVISSLVMLTES-RVARKDLGIDLGGIGIGLGVGLGIGLGGGSGSGAG 60
Query: 61 AGSGSGSSSSSHSSSSSSSGSGGSGSGSSAGSDAGSYAGSRGGSGSG 106
AGSGSGS S S SSSSSSS S SGSG SAGS AGS+AGSR GSGSG
Sbjct: 61 AGSGSGSGSRSSSSSSSSSSSSSSGSGGSAGSSAGSFAGSRAGSGSG 106
BLAST of MS024331 vs. ExPASy TrEMBL
Match:
A0A6J1C481 (putative glycine-rich cell wall structural protein 1 OS=Momordica charantia OX=3673 GN=LOC111007238 PE=4 SV=1)
HSP 1 Score: 170.6 bits (431), Expect = 4.3e-39
Identity = 130/131 (99.24%), Postives = 131/131 (100.00%), Query Frame = 0
Query: 1 MGAMRGVSIVAFLVIGVWVIASESGRVARKDLGVDLGGVGIGVGTGVGLGGASGSGAGAG 60
MGAMRGVSIVAFLVIGVWVIASESGRVARKDLGVDLGGVGIGVGTGVGLGGASGSGAGAG
Sbjct: 1 MGAMRGVSIVAFLVIGVWVIASESGRVARKDLGVDLGGVGIGVGTGVGLGGASGSGAGAG 60
Query: 61 SGSGSSSSSHSSSSSSSGSGGSGSGSSAGSDAGSYAGSRGGSGSGGSGNGGGSGGGYGEG 120
SGSGSSSSSHSSSSSSSGSGGSGSGSSAGSDAGSYAGSRGGSGSGGSGNGGGSGGGYG+G
Sbjct: 61 SGSGSSSSSHSSSSSSSGSGGSGSGSSAGSDAGSYAGSRGGSGSGGSGNGGGSGGGYGQG 120
Query: 121 HGSGGGGGGGN 132
HGSGGGGGGGN
Sbjct: 121 HGSGGGGGGGN 131
BLAST of MS024331 vs. ExPASy TrEMBL
Match:
A0A6J1JMR8 (glycine-rich cell wall structural protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111485795 PE=4 SV=1)
HSP 1 Score: 79.0 bits (193), Expect = 1.7e-11
Identity = 87/128 (67.97%), Postives = 103/128 (80.47%), Query Frame = 0
Query: 1 MGAMRGVSIVAFLVIGVWVIASESGRVARKDLGVDLGGVGIGVGTGVGLG-GASGSGAGA 60
MG ++ + + A LV + V+ SES RVARKDLG+DLGGVG+G+G G+G+G G SGSG+G+
Sbjct: 1 MGRLKSLVLAAMLVSSLLVV-SES-RVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGS 60
Query: 61 GSGSGSSSSSHSSSSSSSGSGGSGSGSSAGSDAGSYAGSRGGSGSGGSGNGG-GSGGGYG 120
GSGSGSSSSS SSSSSSS S SGSGS +GS+AGSYAGSR GSGSGGSG GG G GGGYG
Sbjct: 61 GSGSGSSSSSSSSSSSSSSS--SGSGSDSGSEAGSYAGSRAGSGSGGSGGGGSGYGGGYG 120
Query: 121 EGHGSGGG 127
G+G G G
Sbjct: 121 SGYGGGHG 124
BLAST of MS024331 vs. ExPASy TrEMBL
Match:
A0A7N2L1G7 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)
HSP 1 Score: 77.8 bits (190), Expect = 3.8e-11
Identity = 94/136 (69.12%), Postives = 104/136 (76.47%), Query Frame = 0
Query: 1 MGAMRGVSIVAFLVIGVWVIASESGRVARKDLGVDLGGVGIGVGTGV--GLGGASGSGAG 60
M A + +++VA L++ + VI ESGRVARKDLGVDLGGVG+GVG GV GLGG SGSGAG
Sbjct: 1 MAAFKSLTLVA-LLVAISVIVCESGRVARKDLGVDLGGVGVGVGAGVGLGLGGGSGSGAG 60
Query: 61 A--GSGSGSSSSSHSSSSSSSGSGGSGSGSSAGSDAGSYAGSRGGSGSGGS-GNGGGSGG 120
A GSGSGS SSS SSS SSS S GSGSGS AGS AGSYAGSR GSGSGG+ G G GSG
Sbjct: 61 AGSGSGSGSGSSSSSSSGSSSASSGSGSGSEAGSYAGSYAGSRAGSGSGGNEGRGAGSGS 120
Query: 121 GYGEGHGSGGGGGGGN 132
G G G GSG G G G+
Sbjct: 121 GQGRGSGSGSGRGSGS 135
BLAST of MS024331 vs. ExPASy TrEMBL
Match:
A0A1S3X249 (putative glycine-rich cell wall structural protein 1 OS=Nicotiana tabacum OX=4097 GN=LOC107760441 PE=4 SV=1)
HSP 1 Score: 76.6 bits (187), Expect = 8.4e-11
Identity = 89/134 (66.42%), Postives = 98/134 (73.13%), Query Frame = 0
Query: 1 MGAMRGVSIVAFLVIGVWVIASESGRVARKDLGVDLGGVGI--GVGTGVGLGGASGSGAG 60
M ++ S + FLV +V+ SES RVAR DLG+DLGGVG+ GVG G+GLGG SGSGAG
Sbjct: 1 MAKVKAFSFLVFLVFSSFVVMSES-RVARMDLGLDLGGVGVGLGVGIGLGLGGGSGSGAG 60
Query: 61 AGSGSG---SSSSSHSSSSSSSGSGGSGSGSSAGSDAGSYAGSRGGSGSGGSGNGGGS-- 120
AGSGSG SSSSS SSSSSSS +GG G GS AGS AGSYAGSR GSGSG G GG
Sbjct: 61 AGSGSGSGSSSSSSSSSSSSSSSTGGGGGGSEAGSSAGSYAGSRAGSGSGNRGGSGGRGY 120
Query: 121 GGGYGEGHGSGGGG 128
GGGYG GHG G GG
Sbjct: 121 GGGYGGGHGGGDGG 133
BLAST of MS024331 vs. ExPASy TrEMBL
Match:
A0A6J1E2L6 (glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111430017 PE=4 SV=1)
HSP 1 Score: 76.6 bits (187), Expect = 8.4e-11
Identity = 86/128 (67.19%), Postives = 102/128 (79.69%), Query Frame = 0
Query: 1 MGAMRGVSIVAFLVIGVWVIASESGRVARKDLGVDLGGVGIGVGTGVGLG-GASGSGAGA 60
MG+ + + + A LV + V+ SES RVARKDLG+DLGGVG+G+G G+G+G G SGSG+G+
Sbjct: 1 MGSWKSLLLAAMLVSSLLVV-SES-RVARKDLGLDLGGVGVGIGAGIGIGLGGSGSGSGS 60
Query: 61 GSGSGSSSSSHSSSSSSSGSGGSGSGSSAGSDAGSYAGSRGGSGSGGSGNGG-GSGGGYG 120
GSGSGSSSSS SSSSSSS S SGSGS +GS+AGSYAGSR GSGSGG G GG G GGGYG
Sbjct: 61 GSGSGSSSSSSSSSSSSSSS--SGSGSDSGSEAGSYAGSRAGSGSGGRGGGGSGYGGGYG 120
Query: 121 EGHGSGGG 127
G+G G G
Sbjct: 121 SGYGGGHG 124
BLAST of MS024331 vs. TAIR 10
Match:
AT4G30450.1 (glycine-rich protein )
HSP 1 Score: 76.3 bits (186), Expect = 2.1e-14
Identity = 71/107 (66.36%), Postives = 82/107 (76.64%), Query Frame = 0
Query: 1 MGAMRGVSIVAFLVIGVWVIASESGRVARKDLGVDLGGVGI--GVGTGVGLGGASGSGAG 60
M G+ ++ +VI V+ +ES R+ARKDLG+DLGG+GI GVG G+GLGG SGSGAG
Sbjct: 1 MAKAEGLFLLGLVVISSLVMLTES-RLARKDLGIDLGGIGIGLGVGLGIGLGGGSGSGAG 60
Query: 61 AGSGSGSSSSSHSSSSSSSGSGGSGSGSSAGSDAGSYAGSRGGSGSG 106
AGSGSGS S S SSSSSSS S SGSG SAGS AGS+AGSR GSGSG
Sbjct: 61 AGSGSGSGSRSSSSSSSSSSSSSSGSGGSAGSSAGSFAGSRAGSGSG 106
BLAST of MS024331 vs. TAIR 10
Match:
AT4G30460.1 (glycine-rich protein )
HSP 1 Score: 64.3 bits (155), Expect = 8.3e-11
Identity = 83/125 (66.40%), Postives = 94/125 (75.20%), Query Frame = 0
Query: 9 IVAFLVIGVWVIASESGRVARKDLGVDLGGVGIGVGTGVGL-GGASGSGAGAGSGS-GSS 68
I+ L++ V+ SES RVARKDLG+DLGG+G G+G G+G+ GG SGSGAGAGSGS G
Sbjct: 11 ILITLILATSVLVSES-RVARKDLGLDLGGIGAGIGIGIGIGGGGSGSGAGAGSGSGGGG 70
Query: 69 SSSHSSSSSSSGSGGSGSGSSAGSDAGSYAGSRGGSGSGG-SGNGGGSGGGYGEGHGSGG 128
SSS SSSSSSS S G G AGS+AGSYAGS GSGSGG SG+G G G G G GHG GG
Sbjct: 71 SSSSSSSSSSSSSSSGGGGGDAGSEAGSYAGSHAGSGSGGRSGSGRGRGSGGGGGHGGGG 130
Query: 129 GGGGG 131
GGGGG
Sbjct: 131 GGGGG 134
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_022135223.1 | 8.8e-39 | 99.24 | putative glycine-rich cell wall structural protein 1 [Momordica charantia] | [more] |
| XP_004146662.1 | 5.4e-12 | 67.94 | glycine-rich cell wall structural protein 2 [Cucumis sativus] >KGN65262.1 hypoth... | [more] |
| XP_020872241.1 | 3.5e-11 | 68.22 | counting factor 45-1 [Arabidopsis lyrata subsp. lyrata] | [more] |
| KAG7540899.1 | 3.5e-11 | 68.22 | hypothetical protein ISN45_Aa07g010460 [Arabidopsis thaliana x Arabidopsis areno... | [more] |
| EFH43606.1 | 3.5e-11 | 68.22 | expressed protein, partial [Arabidopsis lyrata subsp. lyrata] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1C481 | 4.3e-39 | 99.24 | putative glycine-rich cell wall structural protein 1 OS=Momordica charantia OX=3... | [more] |
| A0A6J1JMR8 | 1.7e-11 | 67.97 | glycine-rich cell wall structural protein 2-like OS=Cucurbita maxima OX=3661 GN=... | [more] |
| A0A7N2L1G7 | 3.8e-11 | 69.12 | Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1 | [more] |
| A0A1S3X249 | 8.4e-11 | 66.42 | putative glycine-rich cell wall structural protein 1 OS=Nicotiana tabacum OX=409... | [more] |
| A0A6J1E2L6 | 8.4e-11 | 67.19 | glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 G... | [more] |
