MS024321 (gene) Bitter gourd (TR) v1

Overview


Name	MS024321
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold30: 3176048 .. 3176356 (-)
RNA-Seq Expression	MS024321
Synteny	MS024321

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTATGGAAGTTTTTGAAGAATTCCGGCCACTTACTCCCTTAAGATCAACGCTACTAACTACAATTCAGGTCGCCGGAAAACCCGAGGCGAAAAGGGAAGAAGAGGAAGAAGAAGAATGCCAGACGCCGACCGCGGCCGGGAGCCGGCTGAAGTCGACCATGGTGTGTCCGCCGGCGCCGAAGAAACCTCGGCCGCCGCGAAGAAAACTGAATTTCCCGCCGCCGCCGTTTTTTGAAGCTCCCCAAGATCTCGCTTCTGTTTATATTGAGCTTCAAACTCCCTCCAAGAAGATCAGAGCCAAATAA

mRNA sequence

ATGGGTATGGAAGTTTTTGAAGAATTCCGGCCACTTACTCCCTTAAGATCAACGCTACTAACTACAATTCAGGTCGCCGGAAAACCCGAGGCGAAAAGGGAAGAAGAGGAAGAAGAAGAATGCCAGACGCCGACCGCGGCCGGGAGCCGGCTGAAGTCGACCATGGTGTGTCCGCCGGCGCCGAAGAAACCTCGGCCGCCGCGAAGAAAACTGAATTTCCCGCCGCCGCCGTTTTTTGAAGCTCCCCAAGATCTCGCTTCTGTTTATATTGAGCTTCAAACTCCCTCCAAGAAGATCAGAGCCAAATAA

Coding sequence (CDS)

ATGGGTATGGAAGTTTTTGAAGAATTCCGGCCACTTACTCCCTTAAGATCAACGCTACTAACTACAATTCAGGTCGCCGGAAAACCCGAGGCGAAAAGGGAAGAAGAGGAAGAAGAAGAATGCCAGACGCCGACCGCGGCCGGGAGCCGGCTGAAGTCGACCATGGTGTGTCCGCCGGCGCCGAAGAAACCTCGGCCGCCGCGAAGAAAACTGAATTTCCCGCCGCCGCCGTTTTTTGAAGCTCCCCAAGATCTCGCTTCTGTTTATATTGAGCTTCAAACTCCCTCCAAGAAGATCAGAGCCAAATAA

Protein sequence

MGMEVFEEFRPLTPLRSTLLTTIQVAGKPEAKREEEEEEECQTPTAAGSRLKSTMVCPPAPKKPRPPRRKLNFPPPPFFEAPQDLASVYIELQTPSKKIRAK

Homology

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BLAST of MS024321 vs. NCBI nr
Match: KAG6589677.1 (hypothetical protein SDJN03_15100, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 140.2 bits (352), Expect = 9.9e-30
Identity = 74/100 (74.00%), Postives = 82/100 (82.00%), Query Frame = 0


Query: 1   MGMEVFEEFRPLTPLRSTLLTTIQVAGKPEAKREEEEEEECQTPTAAGSRLKSTMVCPPA 60
           MGMEV EEFRPLTPLRS  L       K +A +  +E+E+CQTPTAA +RLK TMVCPPA
Sbjct: 1   MGMEVLEEFRPLTPLRSLSLQ----LPKEKADQNIQEQEDCQTPTAAATRLKPTMVCPPA 60

Query: 61  PKKPRPPRRKLNFPPPPFFEAPQDLASVYIELQTPSKKIR 101
           PKKPRPPRRKLNF PPPFFEAPQDL+SVYIELQ PSKKI+
Sbjct: 61  PKKPRPPRRKLNFLPPPFFEAPQDLSSVYIELQIPSKKIK 96

[Close]

BLAST of MS024321 vs. NCBI nr
Match: KAG6587720.1 (hypothetical protein SDJN03_16285, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 133.7 bits (335), Expect = 9.3e-28
Identity = 72/102 (70.59%), Postives = 83/102 (81.37%), Query Frame = 0


Query: 1   MGMEVFEEFRPLTPLRSTLLTTIQVAGKPEAKR--EEEEEEECQTPTAAGSRLKSTMVCP 60
           MGMEV +EFRPLTPLR  L  ++Q+   P+ +R  +E++ EECQTPTAAGSRLK TM CP
Sbjct: 1   MGMEVMDEFRPLTPLR--LTPSLQI---PKERRDFQEQQPEECQTPTAAGSRLKPTMECP 60

Query: 61  PAPKKPRPPRRKLNFPPPPFFEAPQDLASVYIELQTPSKKIR 101
           PAPKKPRPPRRKLNF PP FF+APQDL SVY ELQ PSKKI+
Sbjct: 61  PAPKKPRPPRRKLNFQPPSFFDAPQDLKSVYFELQFPSKKIK 97

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BLAST of MS024321 vs. NCBI nr
Match: KGN65496.1 (hypothetical protein Csa_019987 [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 1.5e-25
Identity = 65/100 (65.00%), Postives = 77/100 (77.00%), Query Frame = 0


Query: 1   MGMEVFEEFRPLTPLRSTLLTTIQVAGKPEAKREEEEEEECQTPTAAGSRLKSTMVCPPA 60
           MGME+ +EF PLTPL S  L  I    K E +++E++EEEC TPTAA +RLK  ++CPPA
Sbjct: 1   MGMEILDEFSPLTPLSS--LQFIIPKHKTEQQQQEDQEEECLTPTAAAARLKPAIICPPA 60

Query: 61  PKKPRPPRRKLNFPPPPFFEAPQDLASVYIELQTPSKKIR 101
           PKKPRPPRRKLNF PPPFFEAPQDL SVY +   PSKKI+
Sbjct: 61  PKKPRPPRRKLNFLPPPFFEAPQDLNSVYFQFHIPSKKIK 98

[Close]

BLAST of MS024321 vs. NCBI nr
Match: KAG6698666.1 (hypothetical protein I3842_08G031200 [Carya illinoinensis] >KAG7966043.1 hypothetical protein I3843_08G030900 [Carya illinoinensis])

HSP 1 Score: 95.1 bits (235), Expect = 3.7e-16
Identity = 53/106 (50.00%), Postives = 67/106 (63.21%), Query Frame = 0


Query: 1   MGMEVFEEFRPLTPLRSTLLT-----TIQVAGKPEAKREEEEEEECQTPTAAGSRLKSTM 60
           MG E  EE RP+TP+R+  +T      ++++   E K +    EEC TP  +   LKS +
Sbjct: 1   MGFETLEEIRPVTPIRTISITRSFNHAMELSSPDERKYQLLYHEECHTPKISDQALKSPL 60

Query: 61  VCPPAPKKPRPPRRKLNFPPPPFFEAPQDLASVYIELQTPSKKIRA 102
           VCPPAPKKPR  +RKL  PP  F E PQDLASV++ L  PSKKIRA
Sbjct: 61  VCPPAPKKPRTAKRKLRPPPKRFLEVPQDLASVFMVLNKPSKKIRA 106

[Close]

BLAST of MS024321 vs. NCBI nr
Match: KAG2691968.1 (hypothetical protein I3760_08G031500 [Carya illinoinensis] >KAG6644084.1 hypothetical protein CIPAW_08G031000 [Carya illinoinensis])

HSP 1 Score: 94.7 bits (234), Expect = 4.8e-16
Identity = 53/106 (50.00%), Postives = 67/106 (63.21%), Query Frame = 0


Query: 1   MGMEVFEEFRPLTPLRSTLLT-----TIQVAGKPEAKREEEEEEECQTPTAAGSRLKSTM 60
           MG E  EE RP+TP+R+  +T      +++    E K +   +EEC TP  +   LKS +
Sbjct: 1   MGFETLEEIRPVTPIRTISITRSFNHAMELFSPDERKYQLLYDEECHTPKISDQALKSPL 60

Query: 61  VCPPAPKKPRPPRRKLNFPPPPFFEAPQDLASVYIELQTPSKKIRA 102
           VCPPAPKKPR  +RKL  PP  F E PQDLASV++ L  PSKKIRA
Sbjct: 61  VCPPAPKKPRTAKRKLRPPPKRFLEVPQDLASVFMVLNKPSKKIRA 106

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BLAST of MS024321 vs. ExPASy TrEMBL
Match: A0A0A0M005 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G426970 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 7.2e-26
Identity = 65/100 (65.00%), Postives = 77/100 (77.00%), Query Frame = 0


Query: 1   MGMEVFEEFRPLTPLRSTLLTTIQVAGKPEAKREEEEEEECQTPTAAGSRLKSTMVCPPA 60
           MGME+ +EF PLTPL S  L  I    K E +++E++EEEC TPTAA +RLK  ++CPPA
Sbjct: 1   MGMEILDEFSPLTPLSS--LQFIIPKHKTEQQQQEDQEEECLTPTAAAARLKPAIICPPA 60

Query: 61  PKKPRPPRRKLNFPPPPFFEAPQDLASVYIELQTPSKKIR 101
           PKKPRPPRRKLNF PPPFFEAPQDL SVY +   PSKKI+
Sbjct: 61  PKKPRPPRRKLNFLPPPFFEAPQDLNSVYFQFHIPSKKIK 98

[Close]

BLAST of MS024321 vs. ExPASy TrEMBL
Match: A0A5N6R7V3 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_013476 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.3e-16
Identity = 53/107 (49.53%), Postives = 71/107 (66.36%), Query Frame = 0


Query: 1   MGMEVFEEFRPLTPLRSTLLT-----TIQVAGKPEAKREEEEEEECQTPTAAGSRLKSTM 60
           MG+E+ EEFRP+TP+R+  +T       +++   E K    ++ EC TP ++   LKS +
Sbjct: 1   MGLEILEEFRPVTPIRTISITRSSSHATELSEPEETKEVALDDVECHTPKSSVHTLKSPL 60

Query: 61  VCPPAPKKPRPPRRKLNFPPPPFFEAPQDLAS-VYIELQTPSKKIRA 102
           VCPPAPKKPRP RRKL+ PP   F+ P DLAS V++ L  PSKKIRA
Sbjct: 61  VCPPAPKKPRPARRKLSPPPQRIFQVPHDLASVVFMSLTKPSKKIRA 107

[Close]

BLAST of MS024321 vs. ExPASy TrEMBL
Match: A0A1Q3AVG9 (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_03249 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.6e-15
Identity = 56/109 (51.38%), Postives = 71/109 (65.14%), Query Frame = 0


Query: 1   MGMEVFEEFRPLTPLR---STLLTTIQVAGK-PEAKREEE-----EEEECQTPTAAGSRL 60
           MG+E+ EEFRP+T +R   +  LT+     K  ++K+ +E      EEECQTP +A S L
Sbjct: 1   MGLEMPEEFRPITTIRTVSTARLTSFSYVSKISDSKKTQELNGLDNEEECQTPKSAESTL 60

Query: 61  KSTMVCPPAPKKPRPPRRKLNFPPPPFFEAPQDLASVYIELQTPSKKIR 101
              +VCPPAP K RPP+RKL  PP  FFE P DLAS++  L TPSKKIR
Sbjct: 61  --ILVCPPAPSKARPPKRKLCPPPQGFFEVPHDLASLFFSLNTPSKKIR 107

[Close]

BLAST of MS024321 vs. ExPASy TrEMBL
Match: A0A059CL15 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_C00076 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.4e-13
Identity = 49/110 (44.55%), Postives = 69/110 (62.73%), Query Frame = 0


Query: 1   MGMEVFEEFRPLTPLRSTL------LTTIQVAGKPEAKREEEEEEECQTPTAAGSRL--K 60
           MGM V EEFRP TP+R+ +      L+ +    + +     ++E+EC+TP +    +   
Sbjct: 1   MGMGVSEEFRPSTPIRTIVVSSGSKLSDLAPCERKQLHSSPDDEDECRTPKSCPDPMTGH 60

Query: 61  STMVCPPAPKKPRPPRRKLNFPPPP-FFEAPQDLASVYIELQTPSKKIRA 102
           +   CPPAPKKPRPPRRK + PPP  FF+ P DLASV++ +  PSKKIR+
Sbjct: 61  TARACPPAPKKPRPPRRKASGPPPQGFFQVPHDLASVFLVIGKPSKKIRS 110

[Close]

BLAST of MS024321 vs. ExPASy TrEMBL
Match: V7B2R0 (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_009G233800g PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.6e-12
Identity = 45/103 (43.69%), Postives = 68/103 (66.02%), Query Frame = 0


Query: 1   MGMEVFEEFRPLTPLRSTLLTTIQV---AGKPEAKREEEEEEECQTPTAAGSRLKSTMVC 60
           MG+++ EEFRP+TP+R+ + T   +    G  +    E+  EEC TPT+   +L++ +VC
Sbjct: 1   MGLQILEEFRPITPIRTVVPTNRTLKHDLGTTKEVVNEDVVEECHTPTSPSQKLRTPLVC 60

Query: 61  PPAPKKPR-PPRRKLNFPPPPFFEAPQDLASVYIELQTPSKKI 100
           PPAPKKPR PPRR L+ P   FF    DLAS+++ L+TP++ +
Sbjct: 61  PPAPKKPRVPPRRNLDPPSEGFFSVSHDLASIFV-LRTPNQPL 102

[Close]

BLAST of MS024321 vs. TAIR 10
Match: AT5G40460.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27630.1); Has 87 Blast hits to 87 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 41.2 bits (95), Expect = 5.8e-04
Identity = 26/79 (32.91%), Postives = 42/79 (53.16%), Query Frame = 0


Query: 12  LTPLRSTLLTTIQVAGKPEAKREEEEEEECQTPTAAGSRLKSTMVCPPAPKKPRPPRRKL 71
           L P+++ L    ++  + E     EEEE   TPTA  +++   + CPPAP+K RP  +  
Sbjct: 31  LKPVKTKLRAPPEIVTEVEEDCYNEEEECSTTPTAKETKIPELLECPPAPRKRRPALKCR 90

Query: 72  NFPPPPFFEAPQDLASVYI 91
           +     FF  P DL +V++
Sbjct: 91  SNVVREFFTPPSDLETVFL 109

The following BLAST results are available for this feature:

BLAST of MS024321 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6589677.1	9.9e-30	74.00	hypothetical protein SDJN03_15100, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6587720.1	9.3e-28	70.59	hypothetical protein SDJN03_16285, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN65496.1	1.5e-25	65.00	hypothetical protein Csa_019987 [Cucumis sativus]	[more]
KAG6698666.1	3.7e-16	50.00	hypothetical protein I3842_08G031200 [Carya illinoinensis] >KAG7966043.1 hypothe...	[more]
KAG2691968.1	4.8e-16	50.00	hypothetical protein I3760_08G031500 [Carya illinoinensis] >KAG6644084.1 hypothe...	[more]

BLAST of MS024321 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS024321 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M005	7.2e-26	65.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G426970 PE=4 SV=1	[more]
A0A5N6R7V3	2.3e-16	49.53	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_013476 PE=4 SV=1	[more]
A0A1Q3AVG9	2.6e-15	51.38	Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_03249 PE=4...	[more]
A0A059CL15	1.4e-13	44.55	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_C00076 PE=4 SV...	[more]
V7B2R0	1.6e-12	43.69	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_009G233800g PE=4 ...	[more]

BLAST of MS024321 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G40460.1	5.8e-04	32.91	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..77
None	No IPR available	PANTHER	PTHR35162:SF2	OS08G0516600 PROTEIN	coord: 1..102
None	No IPR available	PANTHER	PTHR35162	OS08G0516600 PROTEIN	coord: 1..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS024321.1	MS024321.1	mRNA