MS024318 (gene) Bitter gourd (TR) v1

Overview


Name	MS024318
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	homeobox-leucine zipper protein HAT22-like
Location	scaffold30: 3147056 .. 3148087 (-)
RNA-Seq Expression	MS024318
Synteny	MS024318

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGGAGACGATGAAATCTGCAACATCAGGCTCGGCCTAGGATTGGGTTTTGGCGAAGAATATGTTCCAAAGAAGAAGATTAATAATCATAACCCAAAATTCTTCTCTGACCTCTCTTTCACTCTCATTCCAAAGGAGGAAGCGATTAACGTGGAGATTGAAGCTTCTTCAAGCGATCATGATCATTTGAAGAGAATTAGAAGCAATAATAATCAAGATCAAATTAGAGATTCCAGCTCCATTGTAATCAATGGATCATCAGAGAGGAAAAAACTCAGGCTTTCCAAAGAACAGTCAAATTTGCTCGAAGAAAGCTTCAAACTTCACACGACCTTGAATCCGGTAGATCATTTAATTTTTGATTCTTTTGAACAAAACCCATTTGACCCTTTTCGATTCTCTTCATACCCATCTCGTTTTTTAACCAAAAATTTGATCTTTTTTCATTTTTTTGCATGGATTTTGCAGGCTCAGAAGCAGGCACTTGCCCAACAATTAAACCTCAAAACACGACAAGTGGAAGTTTGGTTTCAAAACCGACGAGCAAGGTATTACAAAATTTCAACATTAATCATTATTATTGTTTAATTTCTTCACCATGCAAGAACAGATCATCACCAAAGACAACGGTTAAAGATCATAGAACTTACATAGGTTTATAATAATCATAGGTTGAATTGATTTTGAGATTGAACCAATGAATATTATTATGGTATTCAGATCGGAAAGTTCCACTGTAGTTTAAGTAGTTTTGGAGTTAGAGTTGTGATTTACGTTCCAATTTTTCTTTACAGGACGAAACTGAAACAAACGGAAGTAGATTGCGAGTTTCTGAAGAAATGCTGCGAAAGGTTGAACGAAGAGAATCGAAGGTTGAAAAAAGAGGTTCAAGAATTAAGATCCTTAAAAATTGGAGCTTCTCAGTTGTATATTCAGCTGCCCAAGGCGGCGACGCTCACAATTTGCCCTTCTTGCAACAAGCTTACGAGGAACGCCGCCGCCACCGCCGCCGCGCCTCTGCCACAATAA

mRNA sequence

ATGGGAGGAGACGATGAAATCTGCAACATCAGGCTCGGCCTAGGATTGGGTTTTGGCGAAGAATATGTTCCAAAGAAGAAGATTAATAATCATAACCCAAAATTCTTCTCTGACCTCTCTTTCACTCTCATTCCAAAGGAGGAAGCGATTAACGTGGAGATTGAAGCTTCTTCAAGCGATCATGATCATTTGAAGAGAATTAGAAGCAATAATAATCAAGATCAAATTAGAGATTCCAGCTCCATTGCTCAGAAGCAGGCACTTGCCCAACAATTAAACCTCAAAACACGACAAGTGGAAGTTTGGTTTCAAAACCGACGAGCAAGGACGAAACTGAAACAAACGGAAGTAGATTGCGAGTTTCTGAAGAAATGCTGCGAAAGGTTGAACGAAGAGAATCGAAGGTTGAAAAAAGAGGTTCAAGAATTAAGATCCTTAAAAATTGGAGCTTCTCAGTTGTATATTCAGCTGCCCAAGGCGGCGACGCTCACAATTTGCCCTTCTTGCAACAAGCTTACGAGGAACGCCGCCGCCACCGCCGCCGCGCCTCTGCCACAATAA

Coding sequence (CDS)

ATGGGAGGAGACGATGAAATCTGCAACATCAGGCTCGGCCTAGGATTGGGTTTTGGCGAAGAATATGTTCCAAAGAAGAAGATTAATAATCATAACCCAAAATTCTTCTCTGACCTCTCTTTCACTCTCATTCCAAAGGAGGAAGCGATTAACGTGGAGATTGAAGCTTCTTCAAGCGATCATGATCATTTGAAGAGAATTAGAAGCAATAATAATCAAGATCAAATTAGAGATTCCAGCTCCATTGCTCAGAAGCAGGCACTTGCCCAACAATTAAACCTCAAAACACGACAAGTGGAAGTTTGGTTTCAAAACCGACGAGCAAGGACGAAACTGAAACAAACGGAAGTAGATTGCGAGTTTCTGAAGAAATGCTGCGAAAGGTTGAACGAAGAGAATCGAAGGTTGAAAAAAGAGGTTCAAGAATTAAGATCCTTAAAAATTGGAGCTTCTCAGTTGTATATTCAGCTGCCCAAGGCGGCGACGCTCACAATTTGCCCTTCTTGCAACAAGCTTACGAGGAACGCCGCCGCCACCGCCGCCGCGCCTCTGCCACAATAA

Protein sequence

MGGDDEICNIRLGLGLGFGEEYVPKKKINNHNPKFFSDLSFTLIPKEEAINVEIEASSSDHDHLKRIRSNNNQDQIRDSSSIAQKQALAQQLNLKTRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKEVQELRSLKIGASQLYIQLPKAATLTICPSCNKLTRNAAATAAAPLPQ

Homology

[Close]

BLAST of MS024318 vs. NCBI nr
Match: XP_022134791.1 (homeobox-leucine zipper protein HAT22-like [Momordica charantia])

HSP 1 Score: 344.4 bits (882), Expect = 6.3e-91
Identity = 186/219 (84.93%), Postives = 186/219 (84.93%), Query Frame = 0


Query: 1   MGGDDEICNIRLGLGLGFGEEYVPKKKINNHNPKFFSDLSFTLIPKEEAINVEIEASSSD 60
           MGGDDEICNIRLGLGLGFGEEYVPKKKINNHNPKFFSDLSFTLIPKEEAINVEIEASSSD
Sbjct: 1   MGGDDEICNIRLGLGLGFGEEYVPKKKINNHNPKFFSDLSFTLIPKEEAINVEIEASSSD 60

Query: 61  HDHLKRIRSNNNQDQIRDSSSI---------------------------------AQKQA 120
           HDHLKRIRSNNNQDQIRDSSSI                                 AQKQA
Sbjct: 61  HDHLKRIRSNNNQDQIRDSSSIVINGSSERKKLRLSKEQSNLLEESFKLHTTLNPAQKQA 120

Query: 121 LAQQLNLKTRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKEVQELRSLK 180
           LAQQLNLKTRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKEVQELRSLK
Sbjct: 121 LAQQLNLKTRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKEVQELRSLK 180

Query: 181 IGASQLYIQLPKAATLTICPSCNKLTRNAAATAAAPLPQ 187
           IGASQLYIQLPKAATLTICPSCNKLTRNAAATAAAPLPQ
Sbjct: 181 IGASQLYIQLPKAATLTICPSCNKLTRNAAATAAAPLPQ 219

[Close]

BLAST of MS024318 vs. NCBI nr
Match: KAG6587716.1 (Homeobox-leucine zipper protein HAT4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 227.3 bits (578), Expect = 1.1e-55
Identity = 135/198 (68.18%), Postives = 153/198 (77.27%), Query Frame = 0


Query: 1   MGGDDEICNIRLGLGLGFG-EEYVPKK--KIN-NH-NPKFFSDLSFTLIPKEE-AINVEI 60
           MG  D++CNIRLGL LG G  EYVPKK  KIN NH NPK F+DLSFTL+PK+E AIN   
Sbjct: 1   MGDQDDLCNIRLGLSLGSGFGEYVPKKMQKINSNHNNPKSFTDLSFTLVPKQELAINSST 60

Query: 61  EASSSDHD---HLKRIRSNNNQDQIRDSS-------SIAQKQALAQQLNLKTRQVEVWFQ 120
             +S   +     K++R +  Q  + + S       + AQKQALA QLNLKTRQVEVWFQ
Sbjct: 61  TTNSLGSERERERKKLRLSKEQATLLEESFKLHTTLNPAQKQALAHQLNLKTRQVEVWFQ 120

Query: 121 NRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKEVQELRSLKIGASQLYIQLPKAATLT 180
           NRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKE+ ELRS+K+GASQLYIQLPKAATLT
Sbjct: 121 NRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKELHELRSIKLGASQLYIQLPKAATLT 180

Query: 181 ICPSCNKLTRNAAATAAA 183
           ICPSC+K+TR  AA AAA
Sbjct: 181 ICPSCDKITRTPAANAAA 198

[Close]

BLAST of MS024318 vs. NCBI nr
Match: XP_023531587.1 (homeobox-leucine zipper protein HAT3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 225.3 bits (573), Expect = 4.3e-55
Identity = 134/198 (67.68%), Postives = 152/198 (76.77%), Query Frame = 0


Query: 1   MGGDDEICNIRLGLGLGFG-EEYVPKK--KIN-NH-NPKFFSDLSFTLIPKEE-AINVEI 60
           MG  D++CNIRLGL LG G  EYVPKK  KIN NH NPK F+DLSFTL+PK+E  IN   
Sbjct: 1   MGDQDDLCNIRLGLSLGSGFGEYVPKKMQKINSNHNNPKSFTDLSFTLVPKQELPINSST 60

Query: 61  EASSSDHD---HLKRIRSNNNQDQIRDSS-------SIAQKQALAQQLNLKTRQVEVWFQ 120
             +S   +     K++R +  Q  + + S       + AQKQALA QLNLKTRQVEVWFQ
Sbjct: 61  TTNSLGSERERERKKLRLSKEQATLLEESFKLHTTLNPAQKQALAHQLNLKTRQVEVWFQ 120

Query: 121 NRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKEVQELRSLKIGASQLYIQLPKAATLT 180
           NRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKE+ ELRS+K+GASQLYIQLPKAATLT
Sbjct: 121 NRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKELHELRSIKLGASQLYIQLPKAATLT 180

Query: 181 ICPSCNKLTRNAAATAAA 183
           ICPSC+K+TR  AA AAA
Sbjct: 181 ICPSCDKITRTPAANAAA 198

[Close]

BLAST of MS024318 vs. NCBI nr
Match: XP_022931479.1 (homeobox-leucine zipper protein HAT3-like [Cucurbita moschata])

HSP 1 Score: 224.2 bits (570), Expect = 9.5e-55
Identity = 134/198 (67.68%), Postives = 152/198 (76.77%), Query Frame = 0


Query: 1   MGGDDEICNIRLGLGLGFG-EEYVPKK--KIN-NH-NPKFFSDLSFTLIPKEE-AINVEI 60
           MG  D++CNIRLGL LG G  EYVPKK  KIN NH NPK  +DLSFTL+PK+E AIN   
Sbjct: 1   MGDQDDLCNIRLGLSLGSGFGEYVPKKMQKINSNHNNPKSCTDLSFTLVPKQELAINSST 60

Query: 61  EASSSDHD---HLKRIRSNNNQDQIRDSS-------SIAQKQALAQQLNLKTRQVEVWFQ 120
             +S   +     K++R +  Q  + + S       + AQKQALA QLNLKTRQVEVWFQ
Sbjct: 61  TTNSLGSERERERKKLRLSKEQATLLEESFKLHTTLNPAQKQALAHQLNLKTRQVEVWFQ 120

Query: 121 NRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKEVQELRSLKIGASQLYIQLPKAATLT 180
           NRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKE+ ELRS+K+GASQLYIQLPKAATLT
Sbjct: 121 NRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKELHELRSIKLGASQLYIQLPKAATLT 180

Query: 181 ICPSCNKLTRNAAATAAA 183
           ICPSC+K+TR  AA AAA
Sbjct: 181 ICPSCDKITRTPAANAAA 198

[Close]

BLAST of MS024318 vs. NCBI nr
Match: XP_022921356.1 (homeobox-leucine zipper protein ATHB-4-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 211.8 bits (538), Expect = 4.9e-51
Identity = 128/220 (58.18%), Postives = 151/220 (68.64%), Query Frame = 0


Query: 1   MGGDDEICNIRLGLGLGFGEEYVPKK-KINNHNPKFFSDLSFTLIPKEE-AINVEIEASS 60
           MG  DE+CN RLGL LGFG +YVPKK +  N  PKF SDLSF+LIP++E AIN++++A+ 
Sbjct: 1   MGDQDELCNTRLGLALGFG-DYVPKKMQKANKQPKFLSDLSFSLIPRQESAINMQLQANE 60

Query: 61  SDHDH---LKRIRSNNNQD-----------------------------QIRDSSSIAQKQ 120
              D    + R RS+ N +                             ++  + ++AQK 
Sbjct: 61  PSKDSSFGISRDRSSTNYNCNAISGGLERERKKLRLSQEQLTLLEETFKLHTTLNLAQKL 120

Query: 121 ALAQQLNLKTRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKEVQELRSL 180
           ALAQQLNLK RQVEVWFQNRRAR+KLKQTEVDCEFLKK CERL EEN RLKKE+QELRS 
Sbjct: 121 ALAQQLNLKARQVEVWFQNRRARSKLKQTEVDCEFLKKYCERLKEENGRLKKELQELRST 180

Query: 181 KIGASQLYIQLPKAATLTICPSCNKLTRNAAATAAAPLPQ 187
           K+GASQLYIQLPKAATLTICPSC+K TR AAA  A   PQ
Sbjct: 181 KLGASQLYIQLPKAATLTICPSCDKTTRPAAAVEAHSPPQ 219

[Close]

BLAST of MS024318 vs. ExPASy Swiss-Prot
Match: P92953 (Homeobox-leucine zipper protein ATHB-4 OS=Arabidopsis thaliana OX=3702 GN=ATHB-4 PE=1 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 7.1e-29
Identity = 66/100 (66.00%), Postives = 82/100 (82.00%), Query Frame = 0


Query: 84  QKQALAQQLNLKTRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKEVQEL 143
           QK ALA+QLNL+ RQVEVWFQNRRARTKLKQTEVDCE+LK+CC+ L EENRRL+KEV EL
Sbjct: 189 QKLALAKQLNLRARQVEVWFQNRRARTKLKQTEVDCEYLKRCCDNLTEENRRLQKEVSEL 248

Query: 144 RSLKIGASQLYIQLPKAATLTICPSCNKLTRNAAATAAAP 184
           R+LK+ +  LY+ +    TLT+CPSC +++ +AA   AAP
Sbjct: 249 RALKL-SPHLYMHMTPPTTLTMCPSCERVSSSAATVTAAP 287

[Close]

BLAST of MS024318 vs. ExPASy Swiss-Prot
Match: Q01I23 (Homeobox-leucine zipper protein HOX17 OS=Oryza sativa subsp. indica OX=39946 GN=HOX17 PE=2 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.2e-28
Identity = 72/128 (56.25%), Postives = 93/128 (72.66%), Query Frame = 0


Query: 65  KRIRSNNNQDQIRDSS-------SIAQKQALAQQLNLKTRQVEVWFQNRRARTKLKQTEV 124
           K++R + +Q  + + S       +  QK  LAQQL L+ RQVEVWFQNRRARTKLKQTEV
Sbjct: 82  KKLRLSKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTKLKQTEV 141

Query: 125 DCEFLKKCCERLNEENRRLKKEVQELRSLKIGASQLYIQLPKAATLTICPSCNKLT---R 183
           DCEFLK+CCE L EENRRL+KEVQELR+LK+ +  LY+ +    TLT+CPSC +++    
Sbjct: 142 DCEFLKRCCETLTEENRRLQKEVQELRALKLVSPHLYMNMSPPTTLTMCPSCERVSNTNN 201

[Close]

BLAST of MS024318 vs. ExPASy Swiss-Prot
Match: Q0JB92 (Homeobox-leucine zipper protein HOX17 OS=Oryza sativa subsp. japonica OX=39947 GN=HOX17 PE=2 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.2e-28
Identity = 72/128 (56.25%), Postives = 93/128 (72.66%), Query Frame = 0


Query: 65  KRIRSNNNQDQIRDSS-------SIAQKQALAQQLNLKTRQVEVWFQNRRARTKLKQTEV 124
           K++R + +Q  + + S       +  QK  LAQQL L+ RQVEVWFQNRRARTKLKQTEV
Sbjct: 82  KKLRLSKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTKLKQTEV 141

Query: 125 DCEFLKKCCERLNEENRRLKKEVQELRSLKIGASQLYIQLPKAATLTICPSCNKLT---R 183
           DCEFLK+CCE L EENRRL+KEVQELR+LK+ +  LY+ +    TLT+CPSC +++    
Sbjct: 142 DCEFLKRCCETLTEENRRLQKEVQELRALKLVSPHLYMNMSPPTTLTMCPSCERVSNTNN 201

[Close]

BLAST of MS024318 vs. ExPASy Swiss-Prot
Match: P46665 (Homeobox-leucine zipper protein HAT14 OS=Arabidopsis thaliana OX=3702 GN=HAT14 PE=2 SV=3)

HSP 1 Score: 124.8 bits (312), Expect = 1.0e-27
Identity = 79/141 (56.03%), Postives = 105/141 (74.47%), Query Frame = 0


Query: 56  ASSSDHDH-----LKRIRSNNNQ-----DQIRDSSSIAQKQ--ALAQQLNLKTRQVEVWF 115
           AS+ D+D       K++R + +Q     D  ++ S++  KQ  ALA+QLNL+ RQVEVWF
Sbjct: 176 ASNEDNDDENGSTRKKLRLSKDQSAFLEDSFKEHSTLNPKQKIALAKQLNLRPRQVEVWF 235

Query: 116 QNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKEVQELRSLKIGASQLYIQLPKAATL 175
           QNRRARTKLKQTEVDCE+LK+CCE L EENRRL+KEV+ELR+LK  ++  Y+QLP A TL
Sbjct: 236 QNRRARTKLKQTEVDCEYLKRCCESLTEENRRLQKEVKELRTLKT-STPFYMQLP-ATTL 295

Query: 176 TICPSCNKLTRNAA--ATAAA 183
           T+CPSC ++  +AA  +T+AA
Sbjct: 296 TMCPSCERVATSAAQPSTSAA 314

[Close]

BLAST of MS024318 vs. ExPASy Swiss-Prot
Match: P46602 (Homeobox-leucine zipper protein HAT3 OS=Arabidopsis thaliana OX=3702 GN=HAT3 PE=1 SV=2)

HSP 1 Score: 124.8 bits (312), Expect = 1.0e-27
Identity = 69/135 (51.11%), Postives = 98/135 (72.59%), Query Frame = 0


Query: 56  ASSSDHDHLKRIRSNNNQ-----DQIRDSSSI--AQKQALAQQLNLKTRQVEVWFQNRRA 115
           + + D    K++R +  Q     +  ++ S++   QK ALA+QLNL+TRQVEVWFQNRRA
Sbjct: 153 SGNGDDSSRKKLRLSKEQALVLEETFKEHSTLNPKQKMALAKQLNLRTRQVEVWFQNRRA 212

Query: 116 RTKLKQTEVDCEFLKKCCERLNEENRRLKKEVQELRSLKIGASQLYIQLPKAATLTICPS 175
           RTKLKQTEVDCE+LK+CCE L +ENRRL+KEV ELR+LK+ +  LY+ +    TLT+CPS
Sbjct: 213 RTKLKQTEVDCEYLKRCCENLTDENRRLQKEVSELRALKL-SPHLYMHMKPPTTLTMCPS 272

Query: 176 CNKLTRNAAATAAAP 184
           C ++   +++++ AP
Sbjct: 273 CERVAVTSSSSSVAP 286

[Close]

BLAST of MS024318 vs. ExPASy TrEMBL
Match: A0A6J1BYS3 (homeobox-leucine zipper protein HAT22-like OS=Momordica charantia OX=3673 GN=LOC111006976 PE=4 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 3.1e-91
Identity = 186/219 (84.93%), Postives = 186/219 (84.93%), Query Frame = 0


Query: 1   MGGDDEICNIRLGLGLGFGEEYVPKKKINNHNPKFFSDLSFTLIPKEEAINVEIEASSSD 60
           MGGDDEICNIRLGLGLGFGEEYVPKKKINNHNPKFFSDLSFTLIPKEEAINVEIEASSSD
Sbjct: 1   MGGDDEICNIRLGLGLGFGEEYVPKKKINNHNPKFFSDLSFTLIPKEEAINVEIEASSSD 60

Query: 61  HDHLKRIRSNNNQDQIRDSSSI---------------------------------AQKQA 120
           HDHLKRIRSNNNQDQIRDSSSI                                 AQKQA
Sbjct: 61  HDHLKRIRSNNNQDQIRDSSSIVINGSSERKKLRLSKEQSNLLEESFKLHTTLNPAQKQA 120

Query: 121 LAQQLNLKTRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKEVQELRSLK 180
           LAQQLNLKTRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKEVQELRSLK
Sbjct: 121 LAQQLNLKTRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKEVQELRSLK 180

Query: 181 IGASQLYIQLPKAATLTICPSCNKLTRNAAATAAAPLPQ 187
           IGASQLYIQLPKAATLTICPSCNKLTRNAAATAAAPLPQ
Sbjct: 181 IGASQLYIQLPKAATLTICPSCNKLTRNAAATAAAPLPQ 219

[Close]

BLAST of MS024318 vs. ExPASy TrEMBL
Match: A0A6J1EUD1 (homeobox-leucine zipper protein HAT3-like OS=Cucurbita moschata OX=3662 GN=LOC111437643 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 4.6e-55
Identity = 134/198 (67.68%), Postives = 152/198 (76.77%), Query Frame = 0


Query: 1   MGGDDEICNIRLGLGLGFG-EEYVPKK--KIN-NH-NPKFFSDLSFTLIPKEE-AINVEI 60
           MG  D++CNIRLGL LG G  EYVPKK  KIN NH NPK  +DLSFTL+PK+E AIN   
Sbjct: 1   MGDQDDLCNIRLGLSLGSGFGEYVPKKMQKINSNHNNPKSCTDLSFTLVPKQELAINSST 60

Query: 61  EASSSDHD---HLKRIRSNNNQDQIRDSS-------SIAQKQALAQQLNLKTRQVEVWFQ 120
             +S   +     K++R +  Q  + + S       + AQKQALA QLNLKTRQVEVWFQ
Sbjct: 61  TTNSLGSERERERKKLRLSKEQATLLEESFKLHTTLNPAQKQALAHQLNLKTRQVEVWFQ 120

Query: 121 NRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKEVQELRSLKIGASQLYIQLPKAATLT 180
           NRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKE+ ELRS+K+GASQLYIQLPKAATLT
Sbjct: 121 NRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKELHELRSIKLGASQLYIQLPKAATLT 180

Query: 181 ICPSCNKLTRNAAATAAA 183
           ICPSC+K+TR  AA AAA
Sbjct: 181 ICPSCDKITRTPAANAAA 198

[Close]

BLAST of MS024318 vs. ExPASy TrEMBL
Match: A0A6J1E158 (homeobox-leucine zipper protein ATHB-4-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111429651 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 2.4e-51
Identity = 128/220 (58.18%), Postives = 151/220 (68.64%), Query Frame = 0


Query: 1   MGGDDEICNIRLGLGLGFGEEYVPKK-KINNHNPKFFSDLSFTLIPKEE-AINVEIEASS 60
           MG  DE+CN RLGL LGFG +YVPKK +  N  PKF SDLSF+LIP++E AIN++++A+ 
Sbjct: 1   MGDQDELCNTRLGLALGFG-DYVPKKMQKANKQPKFLSDLSFSLIPRQESAINMQLQANE 60

Query: 61  SDHDH---LKRIRSNNNQD-----------------------------QIRDSSSIAQKQ 120
              D    + R RS+ N +                             ++  + ++AQK 
Sbjct: 61  PSKDSSFGISRDRSSTNYNCNAISGGLERERKKLRLSQEQLTLLEETFKLHTTLNLAQKL 120

Query: 121 ALAQQLNLKTRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKEVQELRSL 180
           ALAQQLNLK RQVEVWFQNRRAR+KLKQTEVDCEFLKK CERL EEN RLKKE+QELRS 
Sbjct: 121 ALAQQLNLKARQVEVWFQNRRARSKLKQTEVDCEFLKKYCERLKEENGRLKKELQELRST 180

Query: 181 KIGASQLYIQLPKAATLTICPSCNKLTRNAAATAAAPLPQ 187
           K+GASQLYIQLPKAATLTICPSC+K TR AAA  A   PQ
Sbjct: 181 KLGASQLYIQLPKAATLTICPSCDKTTRPAAAVEAHSPPQ 219

[Close]

BLAST of MS024318 vs. ExPASy TrEMBL
Match: A0A6J1JA40 (homeobox-leucine zipper protein ATHB-4-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111484923 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 9.9e-50
Identity = 126/220 (57.27%), Postives = 149/220 (67.73%), Query Frame = 0


Query: 1   MGGDDEICNIRLGLGLGFGEEYVPK-KKINNHNPKFFSDLSFTLIPKEE-AINVEIEASS 60
           MG  DE+CN RLGL LGFG +YVPK  +  N  PKF SDLSF+LIP++E AIN++++A+ 
Sbjct: 1   MGDQDELCNTRLGLALGFG-DYVPKTMQKANKQPKFLSDLSFSLIPRQESAINMQLQANE 60

Query: 61  SDHDH---LKRIRSNNNQD-----------------------------QIRDSSSIAQKQ 120
              D    + R RS+ N +                             ++  + ++AQK 
Sbjct: 61  PSKDSSFGITRDRSSTNYNCNAISGGLERDRKKLRLSQEQLTLLEETFKLHTTLNLAQKL 120

Query: 121 ALAQQLNLKTRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKEVQELRSL 180
           ALA QLNLK+RQVEVWFQNRRAR+KLKQTEVDCEFLKK CERL EEN RLKKE+QELRS 
Sbjct: 121 ALADQLNLKSRQVEVWFQNRRARSKLKQTEVDCEFLKKYCERLKEENGRLKKELQELRSR 180

Query: 181 KIGASQLYIQLPKAATLTICPSCNKLTRNAAATAAAPLPQ 187
           KIGASQLYIQLPKAATLTICPSC+K TR  AA  A   PQ
Sbjct: 181 KIGASQLYIQLPKAATLTICPSCDKTTRPVAAVEAHSPPQ 219

[Close]

BLAST of MS024318 vs. ExPASy TrEMBL
Match: A0A0A0M012 (Homeobox domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G433050 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 1.3e-49
Identity = 139/259 (53.67%), Postives = 152/259 (58.69%), Query Frame = 0


Query: 4   DDEICNIR-LGLGLGFGEEYVPKKKINNHNPKFFSDLSFTLIPKEEA-----INVEI--- 63
           +DEICNI  L LGLGFG++YVPKK   N   +    LSFTLIPKEE       N+EI   
Sbjct: 6   EDEICNISWLSLGLGFGDQYVPKKIQKNQQQQ--QQLSFTLIPKEELEITNNNNMEIDDD 65

Query: 64  EASSS----DHDHLKRIRSNN---NQDQIRDSSSI------------------------- 123
           EA+SS    DH  +KRIRS+N   N D  R  SS                          
Sbjct: 66  EANSSEEDDDHHLMKRIRSSNNIVNYDHHRQDSSFGSIRRLSSDHYINNSDIVNTTNHNY 125

Query: 124 --------------------------------------AQKQALAQQLNLKTRQVEVWFQ 183
                                                 AQKQALAQQLNLKTRQVEVWFQ
Sbjct: 126 KGISSSGSELRERKKLRLSKEQSTLLEESFKLHTTLNPAQKQALAQQLNLKTRQVEVWFQ 185

[Close]

BLAST of MS024318 vs. TAIR 10
Match: AT2G44910.1 (homeobox-leucine zipper protein 4 )

HSP 1 Score: 128.6 bits (322), Expect = 5.1e-30
Identity = 66/100 (66.00%), Postives = 82/100 (82.00%), Query Frame = 0


Query: 84  QKQALAQQLNLKTRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKEVQEL 143
           QK ALA+QLNL+ RQVEVWFQNRRARTKLKQTEVDCE+LK+CC+ L EENRRL+KEV EL
Sbjct: 189 QKLALAKQLNLRARQVEVWFQNRRARTKLKQTEVDCEYLKRCCDNLTEENRRLQKEVSEL 248

Query: 144 RSLKIGASQLYIQLPKAATLTICPSCNKLTRNAAATAAAP 184
           R+LK+ +  LY+ +    TLT+CPSC +++ +AA   AAP
Sbjct: 249 RALKL-SPHLYMHMTPPTTLTMCPSCERVSSSAATVTAAP 287

[Close]

BLAST of MS024318 vs. TAIR 10
Match: AT3G60390.1 (homeobox-leucine zipper protein 3 )

HSP 1 Score: 124.8 bits (312), Expect = 7.3e-29
Identity = 69/135 (51.11%), Postives = 98/135 (72.59%), Query Frame = 0


Query: 56  ASSSDHDHLKRIRSNNNQ-----DQIRDSSSI--AQKQALAQQLNLKTRQVEVWFQNRRA 115
           + + D    K++R +  Q     +  ++ S++   QK ALA+QLNL+TRQVEVWFQNRRA
Sbjct: 153 SGNGDDSSRKKLRLSKEQALVLEETFKEHSTLNPKQKMALAKQLNLRTRQVEVWFQNRRA 212

Query: 116 RTKLKQTEVDCEFLKKCCERLNEENRRLKKEVQELRSLKIGASQLYIQLPKAATLTICPS 175
           RTKLKQTEVDCE+LK+CCE L +ENRRL+KEV ELR+LK+ +  LY+ +    TLT+CPS
Sbjct: 213 RTKLKQTEVDCEYLKRCCENLTDENRRLQKEVSELRALKL-SPHLYMHMKPPTTLTMCPS 272

Query: 176 CNKLTRNAAATAAAP 184
           C ++   +++++ AP
Sbjct: 273 CERVAVTSSSSSVAP 286

[Close]

BLAST of MS024318 vs. TAIR 10
Match: AT5G06710.1 (homeobox from Arabidopsis thaliana )

HSP 1 Score: 124.8 bits (312), Expect = 7.3e-29
Identity = 79/141 (56.03%), Postives = 105/141 (74.47%), Query Frame = 0


Query: 56  ASSSDHDH-----LKRIRSNNNQ-----DQIRDSSSIAQKQ--ALAQQLNLKTRQVEVWF 115
           AS+ D+D       K++R + +Q     D  ++ S++  KQ  ALA+QLNL+ RQVEVWF
Sbjct: 176 ASNEDNDDENGSTRKKLRLSKDQSAFLEDSFKEHSTLNPKQKIALAKQLNLRPRQVEVWF 235

Query: 116 QNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKEVQELRSLKIGASQLYIQLPKAATL 175
           QNRRARTKLKQTEVDCE+LK+CCE L EENRRL+KEV+ELR+LK  ++  Y+QLP A TL
Sbjct: 236 QNRRARTKLKQTEVDCEYLKRCCESLTEENRRLQKEVKELRTLKT-STPFYMQLP-ATTL 295

Query: 176 TICPSCNKLTRNAA--ATAAA 183
           T+CPSC ++  +AA  +T+AA
Sbjct: 296 TMCPSCERVATSAAQPSTSAA 314

[Close]

BLAST of MS024318 vs. TAIR 10
Match: AT4G37790.1 (Homeobox-leucine zipper protein family )

HSP 1 Score: 123.2 bits (308), Expect = 2.1e-28
Identity = 72/128 (56.25%), Postives = 92/128 (71.88%), Query Frame = 0


Query: 58  SSDHDH------LKRIRSNNNQD-------QIRDSSSIAQKQALAQQLNLKTRQVEVWFQ 117
           S DHD        K++R    Q        ++  + +  QKQALA+QLNL+ RQVEVWFQ
Sbjct: 113 SDDHDDEEGVSARKKLRLTKQQSALLEDNFKLHSTLNPKQKQALARQLNLRPRQVEVWFQ 172

Query: 118 NRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKEVQELRSLKIGASQLYIQLPKAATLT 173
           NRRARTKLKQTEVDCEFLKKCCE L +ENRRL+KE+Q+L++LK+ +   Y+ +P AATLT
Sbjct: 173 NRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQDLKALKL-SQPFYMHMP-AATLT 232

[Close]

BLAST of MS024318 vs. TAIR 10
Match: AT4G16780.1 (homeobox protein 2 )

HSP 1 Score: 120.6 bits (301), Expect = 1.4e-27
Identity = 72/128 (56.25%), Postives = 94/128 (73.44%), Query Frame = 0


Query: 65  KRIRSNNNQDQI-----RDSSSI--AQKQALAQQLNLKTRQVEVWFQNRRARTKLKQTEV 124
           K++R + +Q  I     +D S++   QKQALA+QL L+ RQVEVWFQNRRARTKLKQTEV
Sbjct: 129 KKLRLSKDQSAILEETFKDHSTLNPKQKQALAKQLGLRARQVEVWFQNRRARTKLKQTEV 188

Query: 125 DCEFLKKCCERLNEENRRLKKEVQELRSLKIGASQLYIQLPKAATLTICPSCNKLT---- 182
           DCEFL++CCE L EENRRL+KEV ELR+LK+ + Q Y+ +    TLT+CPSC  ++    
Sbjct: 189 DCEFLRRCCENLTEENRRLQKEVTELRALKL-SPQFYMHMSPPTTLTMCPSCEHVSVPPP 248

The following BLAST results are available for this feature:

BLAST of MS024318 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134791.1	6.3e-91	84.93	homeobox-leucine zipper protein HAT22-like [Momordica charantia]	[more]
KAG6587716.1	1.1e-55	68.18	Homeobox-leucine zipper protein HAT4, partial [Cucurbita argyrosperma subsp. sor...	[more]
XP_023531587.1	4.3e-55	67.68	homeobox-leucine zipper protein HAT3-like [Cucurbita pepo subsp. pepo]	[more]
XP_022931479.1	9.5e-55	67.68	homeobox-leucine zipper protein HAT3-like [Cucurbita moschata]	[more]
XP_022921356.1	4.9e-51	58.18	homeobox-leucine zipper protein ATHB-4-like isoform X1 [Cucurbita moschata]	[more]

BLAST of MS024318 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P92953	7.1e-29	66.00	Homeobox-leucine zipper protein ATHB-4 OS=Arabidopsis thaliana OX=3702 GN=ATHB-4...	[more]
Q01I23	1.2e-28	56.25	Homeobox-leucine zipper protein HOX17 OS=Oryza sativa subsp. indica OX=39946 GN=...	[more]
Q0JB92	1.2e-28	56.25	Homeobox-leucine zipper protein HOX17 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
P46665	1.0e-27	56.03	Homeobox-leucine zipper protein HAT14 OS=Arabidopsis thaliana OX=3702 GN=HAT14 P...	[more]
P46602	1.0e-27	51.11	Homeobox-leucine zipper protein HAT3 OS=Arabidopsis thaliana OX=3702 GN=HAT3 PE=...	[more]

BLAST of MS024318 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BYS3	3.1e-91	84.93	homeobox-leucine zipper protein HAT22-like OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1EUD1	4.6e-55	67.68	homeobox-leucine zipper protein HAT3-like OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A6J1E158	2.4e-51	58.18	homeobox-leucine zipper protein ATHB-4-like isoform X1 OS=Cucurbita moschata OX=...	[more]
A0A6J1JA40	9.9e-50	57.27	homeobox-leucine zipper protein ATHB-4-like isoform X1 OS=Cucurbita maxima OX=36...	[more]
A0A0A0M012	1.3e-49	53.67	Homeobox domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G433050 PE...	[more]

BLAST of MS024318 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G44910.1	5.1e-30	66.00	homeobox-leucine zipper protein 4	[more]
AT3G60390.1	7.3e-29	51.11	homeobox-leucine zipper protein 3	[more]
AT5G06710.1	7.3e-29	56.03	homeobox from Arabidopsis thaliana	[more]
AT4G37790.1	2.1e-28	56.25	Homeobox-leucine zipper protein family	[more]
AT4G16780.1	1.4e-27	56.25	homeobox protein 2	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 112..149
None	No IPR available	GENE3D	1.10.10.60		coord: 76..111 e-value: 2.3E-11 score: 45.1
None	No IPR available	PANTHER	PTHR45714	FAMILY NOT NAMED	coord: 83..177
None	No IPR available	PANTHER	PTHR45714:SF34	HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT9	coord: 83..177
IPR001356	Homeobox domain	SMART	SM00389	HOX_1	coord: 64..117 e-value: 0.0015 score: 23.2
IPR001356	Homeobox domain	PFAM	PF00046	Homeodomain	coord: 81..111 e-value: 2.0E-10 score: 40.4
IPR001356	Homeobox domain	PROSITE	PS50071	HOMEOBOX_2	coord: 84..113 score: 12.308851
IPR001356	Homeobox domain	CDD	cd00086	homeodomain	coord: 81..114 e-value: 1.82887E-8 score: 46.8529
IPR003106	Leucine zipper, homeobox-associated	SMART	SM00340	halz	coord: 113..156 e-value: 2.9E-20 score: 83.3
IPR003106	Leucine zipper, homeobox-associated	PFAM	PF02183	HALZ	coord: 113..146 e-value: 4.4E-10 score: 39.6
IPR017970	Homeobox, conserved site	PROSITE	PS00027	HOMEOBOX_1	coord: 88..111
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 80..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS024318.1	MS024318.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0043565	sequence-specific DNA binding