MS024317 (gene) Bitter gourd (TR) v1

Overview
NameMS024317
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionClavata3/ESR (CLE) gene family member
Locationscaffold30: 3141264 .. 3141569 (-)
RNA-Seq ExpressionMS024317
SyntenyMS024317
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGTAGCTCAGTCCACCATTTTGGTGCTTTGGATAATTTATGCTATTTTAATCTGCATTGGCTCGGTCGTCGGAGCTCGGAAGATGTTGTTCCCGGCTCACAACGGTAGCGAGGACGACAACGACAGCTTAACGACTACAATGGAGACGACGACACTCGGTTCTTGCAAGTCAAAGAACCTCCATTGTTGTGAGTGCTCCTTCTCGAGCTCTGAGGAGATGGCCACGATCAATAATGGAAGCAGCAGCTCTGAGGAGAAAAGGGTTGTCCCCACTGGCCCTAACCCACTTCACAATAAGTAG

mRNA sequence

ATGAGAGTAGCTCAGTCCACCATTTTGGTGCTTTGGATAATTTATGCTATTTTAATCTGCATTGGCTCGGTCGTCGGAGCTCGGAAGATGTTGTTCCCGGCTCACAACGGTAGCGAGGACGACAACGACAGCTTAACGACTACAATGGAGACGACGACACTCGGTTCTTGCAAGTCAAAGAACCTCCATTGTTGTGAGTGCTCCTTCTCGAGCTCTGAGGAGATGGCCACGATCAATAATGGAAGCAGCAGCTCTGAGGAGAAAAGGGTTGTCCCCACTGGCCCTAACCCACTTCACAATAAGTAG

Coding sequence (CDS)

ATGAGAGTAGCTCAGTCCACCATTTTGGTGCTTTGGATAATTTATGCTATTTTAATCTGCATTGGCTCGGTCGTCGGAGCTCGGAAGATGTTGTTCCCGGCTCACAACGGTAGCGAGGACGACAACGACAGCTTAACGACTACAATGGAGACGACGACACTCGGTTCTTGCAAGTCAAAGAACCTCCATTGTTGTGAGTGCTCCTTCTCGAGCTCTGAGGAGATGGCCACGATCAATAATGGAAGCAGCAGCTCTGAGGAGAAAAGGGTTGTCCCCACTGGCCCTAACCCACTTCACAATAAGTAG

Protein sequence

MRVAQSTILVLWIIYAILICIGSVVGARKMLFPAHNGSEDDNDSLTTTMETTTLGSCKSKNLHCCECSFSSSEEMATINNGSSSSEEKRVVPTGPNPLHNK
Homology
BLAST of MS024317 vs. NCBI nr
Match: KAG6587715.1 (hypothetical protein SDJN03_16280, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 113.2 bits (282), Expect = 1.3e-21
Identity = 68/101 (67.33%), Postives = 81/101 (80.20%), Query Frame = 0

Query: 1   MRVAQSTILVLWIIYAILICIGSVVGARKMLFPAHNGSEDDNDSLTTTMETTTLGSCKSK 60
           MR+AQS+ILVL +  ++ +CIGSVVGARKMLF A + S  DN+SLT  ME++    CKSK
Sbjct: 1   MRLAQSSILVLSL--SVFVCIGSVVGARKMLFLAQD-STRDNNSLTIAMESSR--RCKSK 60

Query: 61  NLHCCECSFSSSEEMATINNGSSSSEEKRVVPTGPNPLHNK 102
            L+CCEC FSSSE+M  INN +SSSEEKRVVPTGPNPLHNK
Sbjct: 61  KLYCCECFFSSSEKM--INNATSSSEEKRVVPTGPNPLHNK 94

BLAST of MS024317 vs. NCBI nr
Match: KGN65507.1 (hypothetical protein Csa_019832 [Cucumis sativus])

HSP 1 Score: 101.7 bits (252), Expect = 3.9e-18
Identity = 58/107 (54.21%), Postives = 76/107 (71.03%), Query Frame = 0

Query: 1   MRVAQSTILVLWIIYAILICIGSVVGARKMLFPAHNGSEDDNDSLTTTMETTTLGSCK-S 60
           M +++S+IL+ W +  +++C+ SV GARK LF  HNG  D+ +SLTTT+  TT+  CK S
Sbjct: 5   MGLSKSSILLFW-LSVLVVCVTSVAGARKTLFLDHNGVRDNKNSLTTTLAETTINRCKYS 64

Query: 61  KN-----LHCCECSFSSSEEMATI-NNGSSSSEEKRVVPTGPNPLHN 101
           KN     LHCCEC F SS++M  I NN  ++ EEKRVVPTGPNPLHN
Sbjct: 65  KNNDVNDLHCCECFFLSSKKMMMIDNNNGTNFEEKRVVPTGPNPLHN 110

BLAST of MS024317 vs. NCBI nr
Match: KAA0058189.1 (Clavata3/ESR (CLE) protein [Cucumis melo var. makuwa] >TYK28553.1 Clavata3/ESR (CLE) gene family member [Cucumis melo var. makuwa])

HSP 1 Score: 99.0 bits (245), Expect = 2.5e-17
Identity = 57/107 (53.27%), Postives = 75/107 (70.09%), Query Frame = 0

Query: 1   MRVAQSTILVLWIIYAILICIGSVVGARKMLFPAHNGSEDDNDSLTTTMETTTLGSCK-S 60
           M +++S+ILV W +  +++C+ SV GARK LF  HNG  D+ +SLTTT   TT+  CK S
Sbjct: 5   MGLSKSSILVFW-LSVLVVCVTSVAGARKPLFLGHNGVRDNKNSLTTTPGETTINRCKYS 64

Query: 61  KN----LHCCECSFSSSEEMATI--NNGSSSSEEKRVVPTGPNPLHN 101
           KN    LHCCEC F SS++M  +  NN  ++ E+KRVVPTGPNPLHN
Sbjct: 65  KNNANDLHCCECFFLSSKKMMMMINNNNGTNFEDKRVVPTGPNPLHN 110

BLAST of MS024317 vs. NCBI nr
Match: XP_023003872.1 (putative receptor-like protein kinase At4g00960 [Cucurbita maxima])

HSP 1 Score: 77.8 bits (190), Expect = 6.0e-11
Identity = 51/86 (59.30%), Postives = 64/86 (74.42%), Query Frame = 0

Query: 5   QSTILVLWIIYAILICIGSVVGARKMLFPAHNGSEDDNDSLTTTMETTTLGSCKSKNLHC 64
           +S+ILVL +  ++ +CIGSVVGARKMLF A + S  DN+SLT  ME +    CKSK L+C
Sbjct: 113 RSSILVLSL--SVFVCIGSVVGARKMLFLAQD-STRDNNSLTIAMENSR--RCKSKKLYC 172

Query: 65  CECSFSSSEEMATINNGSSSSEEKRV 91
           C C FSSSE+  TINN +SSSEEKR+
Sbjct: 173 CGCFFSSSEK--TINNATSSSEEKRL 191

BLAST of MS024317 vs. ExPASy TrEMBL
Match: A0A0A0LXI1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G433060 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.9e-18
Identity = 58/107 (54.21%), Postives = 76/107 (71.03%), Query Frame = 0

Query: 1   MRVAQSTILVLWIIYAILICIGSVVGARKMLFPAHNGSEDDNDSLTTTMETTTLGSCK-S 60
           M +++S+IL+ W +  +++C+ SV GARK LF  HNG  D+ +SLTTT+  TT+  CK S
Sbjct: 5   MGLSKSSILLFW-LSVLVVCVTSVAGARKTLFLDHNGVRDNKNSLTTTLAETTINRCKYS 64

Query: 61  KN-----LHCCECSFSSSEEMATI-NNGSSSSEEKRVVPTGPNPLHN 101
           KN     LHCCEC F SS++M  I NN  ++ EEKRVVPTGPNPLHN
Sbjct: 65  KNNDVNDLHCCECFFLSSKKMMMIDNNNGTNFEEKRVVPTGPNPLHN 110

BLAST of MS024317 vs. ExPASy TrEMBL
Match: A0A5A7UXE2 (Clavata3/ESR (CLE) gene family member OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G002000 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.2e-17
Identity = 57/107 (53.27%), Postives = 75/107 (70.09%), Query Frame = 0

Query: 1   MRVAQSTILVLWIIYAILICIGSVVGARKMLFPAHNGSEDDNDSLTTTMETTTLGSCK-S 60
           M +++S+ILV W +  +++C+ SV GARK LF  HNG  D+ +SLTTT   TT+  CK S
Sbjct: 5   MGLSKSSILVFW-LSVLVVCVTSVAGARKPLFLGHNGVRDNKNSLTTTPGETTINRCKYS 64

Query: 61  KN----LHCCECSFSSSEEMATI--NNGSSSSEEKRVVPTGPNPLHN 101
           KN    LHCCEC F SS++M  +  NN  ++ E+KRVVPTGPNPLHN
Sbjct: 65  KNNANDLHCCECFFLSSKKMMMMINNNNGTNFEDKRVVPTGPNPLHN 110

BLAST of MS024317 vs. ExPASy TrEMBL
Match: A0A6J1KNU3 (putative receptor-like protein kinase At4g00960 OS=Cucurbita maxima OX=3661 GN=LOC111497330 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.9e-11
Identity = 51/86 (59.30%), Postives = 64/86 (74.42%), Query Frame = 0

Query: 5   QSTILVLWIIYAILICIGSVVGARKMLFPAHNGSEDDNDSLTTTMETTTLGSCKSKNLHC 64
           +S+ILVL +  ++ +CIGSVVGARKMLF A + S  DN+SLT  ME +    CKSK L+C
Sbjct: 113 RSSILVLSL--SVFVCIGSVVGARKMLFLAQD-STRDNNSLTIAMENSR--RCKSKKLYC 172

Query: 65  CECSFSSSEEMATINNGSSSSEEKRV 91
           C C FSSSE+  TINN +SSSEEKR+
Sbjct: 173 CGCFFSSSEK--TINNATSSSEEKRL 191

BLAST of MS024317 vs. ExPASy TrEMBL
Match: G7JT84 (Clavata3/ESR (CLE) gene family member OS=Medicago truncatula OX=3880 GN=MTR_4g126940 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 1.0e-03
Identity = 38/99 (38.38%), Postives = 52/99 (52.53%), Query Frame = 0

Query: 5   QSTILVLWIIYAILICIGSVVGARKMLFPAH--NGSEDDNDSLTTTMETTTLGSCKSKNL 64
           Q  ILV+ I++    CIGS   ARK +F  +  +G++  N S    ++   +  C  K  
Sbjct: 4   QEVILVICILF--WACIGSTTVARKTVFVGNLFDGAKKKNSSSVAVLD-DDVHKCNHKRK 63

Query: 65  HCCECSFSSSEEMATINNGSSSSEEKRVVPTGPNPLHNK 102
           H   C            N +SSSE+KRVVPTGPNPLHN+
Sbjct: 64  HLSSC-----------YNNTSSSEDKRVVPTGPNPLHNR 88

BLAST of MS024317 vs. ExPASy TrEMBL
Match: A0A396IGH6 (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr4g0071381 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 1.0e-03
Identity = 38/99 (38.38%), Postives = 52/99 (52.53%), Query Frame = 0

Query: 5   QSTILVLWIIYAILICIGSVVGARKMLFPAH--NGSEDDNDSLTTTMETTTLGSCKSKNL 64
           Q  ILV+ I++    CIGS   ARK +F  +  +G++  N S    ++   +  C  K  
Sbjct: 4   QEVILVICILF--WACIGSTTVARKTVFVGNLFDGAKKKNSSSVAVLD-DDVHKCNHKRK 63

Query: 65  HCCECSFSSSEEMATINNGSSSSEEKRVVPTGPNPLHNK 102
           H   C            N +SSSE+KRVVPTGPNPLHN+
Sbjct: 64  HLSSC-----------YNNTSSSEDKRVVPTGPNPLHNR 88

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6587715.11.3e-2167.33hypothetical protein SDJN03_16280, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN65507.13.9e-1854.21hypothetical protein Csa_019832 [Cucumis sativus][more]
KAA0058189.12.5e-1753.27Clavata3/ESR (CLE) protein [Cucumis melo var. makuwa] >TYK28553.1 Clavata3/ESR (... [more]
XP_023003872.16.0e-1159.30putative receptor-like protein kinase At4g00960 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LXI11.9e-1854.21Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G433060 PE=4 SV=1[more]
A0A5A7UXE21.2e-1753.27Clavata3/ESR (CLE) gene family member OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A6J1KNU32.9e-1159.30putative receptor-like protein kinase At4g00960 OS=Cucurbita maxima OX=3661 GN=L... [more]
G7JT841.0e-0338.38Clavata3/ESR (CLE) gene family member OS=Medicago truncatula OX=3880 GN=MTR_4g12... [more]
A0A396IGH61.0e-0338.38Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr4g0071381 ... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..101
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..90

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS024317.1MS024317.1mRNA