MS024311 (gene) Bitter gourd (TR) v1

Overview


Name	MS024311
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	AT-hook motif nuclear-localized protein 16
Location	scaffold30: 2759224 .. 2759445 (-)
RNA-Seq Expression	MS024311
Synteny	MS024311

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCAACGTTCATGAACGCAACATTTGACCGCCTGCCGTCGGATGACGACGAAGCCACCGCCGCCATGCAGAGCCAACACTACCAGAACGGGCGGAGCCACCACCACCTCGATGTTTCCGATCTGTACGGAGTGCCGCAGAACTTGATCACCAACACCACTCTTCCGCCGGACTTATACTCTTGGGCGGCGGCGGGCAGAACCATGTCGAAGACTTAG

mRNA sequence

ATGGCGGCAACGTTCATGAACGCAACATTTGACCGCCTGCCGTCGGATGACGACGAAGCCACCGCCGCCATGCAGAGCCAACACTACCAGAACGGGCGGAGCCACCACCACCTCGATGTTTCCGATCTGTACGGAGTGCCGCAGAACTTGATCACCAACACCACTCTTCCGCCGGACTTATACTCTTGGGCGGCGGCGGGCAGAACCATGTCGAAGACTTAG

Coding sequence (CDS)

ATGGCGGCAACGTTCATGAACGCAACATTTGACCGCCTGCCGTCGGATGACGACGAAGCCACCGCCGCCATGCAGAGCCAACACTACCAGAACGGGCGGAGCCACCACCACCTCGATGTTTCCGATCTGTACGGAGTGCCGCAGAACTTGATCACCAACACCACTCTTCCGCCGGACTTATACTCTTGGGCGGCGGCGGGCAGAACCATGTCGAAGACTTAG

Protein sequence

MAATFMNATFDRLPSDDDEATAAMQSQHYQNGRSHHHLDVSDLYGVPQNLITNTTLPPDLYSWAAAGRTMSKT

Homology

[Close]

BLAST of MS024311 vs. NCBI nr
Match: XP_022135397.1 (AT-hook motif nuclear-localized protein 16 [Momordica charantia])

HSP 1 Score: 152.5 bits (384), Expect = 1.4e-33
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1   MAATFMNATFDRLPSDDDEATAAMQSQHYQNGRSHHHLDVSDLYGVPQNLITNTTLPPDL 60
           MAATFMNATFDRLPSDDDEATAAMQSQHYQNGRSHHHLDVSDLYGVPQNLITNTTLPPDL
Sbjct: 208 MAATFMNATFDRLPSDDDEATAAMQSQHYQNGRSHHHLDVSDLYGVPQNLITNTTLPPDL 267

Query: 61  YSWAAAGRTMSKT 74
           YSWAAAGRTMSKT
Sbjct: 268 YSWAAAGRTMSKT 280

[Close]

BLAST of MS024311 vs. NCBI nr
Match: XP_038880552.1 (AT-hook motif nuclear-localized protein 16 [Benincasa hispida])

HSP 1 Score: 138.3 bits (347), Expect = 2.7e-29
Identity = 67/74 (90.54%), Postives = 71/74 (95.95%), Query Frame = 0


Query: 1   MAATFMNATFDRLPSDDDEATAAMQSQHY-QNGRSHHHLDVSDLYGVPQNLITNTTLPPD 60
           MAATFMNATFDRLPSDD+E  AAMQSQHY QNGRSHHHLDVSDLYGVPQNLITN++LPP+
Sbjct: 203 MAATFMNATFDRLPSDDEEVAAAMQSQHYGQNGRSHHHLDVSDLYGVPQNLITNSSLPPE 262

Query: 61  LYSWAAAGRTMSKT 74
           LYSWAAAGRTMSKT
Sbjct: 263 LYSWAAAGRTMSKT 276

[Close]

BLAST of MS024311 vs. NCBI nr
Match: KAE8652473.1 (hypothetical protein Csa_013658 [Cucumis sativus])

HSP 1 Score: 135.2 bits (339), Expect = 2.3e-28
Identity = 65/74 (87.84%), Postives = 69/74 (93.24%), Query Frame = 0


Query: 1   MAATFMNATFDRLPSDDDEATAAMQSQHY-QNGRSHHHLDVSDLYGVPQNLITNTTLPPD 60
           MAATFMNATFDRLPSDD+E  A MQSQHY QNGRSHHHLDVSDLYGVPQNLITN++LPP+
Sbjct: 203 MAATFMNATFDRLPSDDEEVAATMQSQHYGQNGRSHHHLDVSDLYGVPQNLITNSSLPPE 262

Query: 61  LYSWAAAGRTMSKT 74
           LYSWA AGRTMSKT
Sbjct: 263 LYSWATAGRTMSKT 276

[Close]

BLAST of MS024311 vs. NCBI nr
Match: XP_011649113.1 (AT-hook motif nuclear-localized protein 16 [Cucumis sativus])

HSP 1 Score: 135.2 bits (339), Expect = 2.3e-28
Identity = 65/74 (87.84%), Postives = 69/74 (93.24%), Query Frame = 0


Query: 1   MAATFMNATFDRLPSDDDEATAAMQSQHY-QNGRSHHHLDVSDLYGVPQNLITNTTLPPD 60
           MAATFMNATFDRLPSDD+E  A MQSQHY QNGRSHHHLDVSDLYGVPQNLITN++LPP+
Sbjct: 205 MAATFMNATFDRLPSDDEEVAATMQSQHYGQNGRSHHHLDVSDLYGVPQNLITNSSLPPE 264

Query: 61  LYSWAAAGRTMSKT 74
           LYSWA AGRTMSKT
Sbjct: 265 LYSWATAGRTMSKT 278

[Close]

BLAST of MS024311 vs. NCBI nr
Match: KAA0058128.1 (AT-hook motif nuclear-localized protein 16 [Cucumis melo var. makuwa] >TYK28482.1 AT-hook motif nuclear-localized protein 16 [Cucumis melo var. makuwa])

HSP 1 Score: 134.0 bits (336), Expect = 5.1e-28
Identity = 64/74 (86.49%), Postives = 69/74 (93.24%), Query Frame = 0


Query: 1   MAATFMNATFDRLPSDDDEATAAMQSQHY-QNGRSHHHLDVSDLYGVPQNLITNTTLPPD 60
           MAATFMNATFDRLPSDD+E  A MQSQHY QNGRSHHHLDVSDLYGVPQNLITN++LPP+
Sbjct: 204 MAATFMNATFDRLPSDDEEVAATMQSQHYGQNGRSHHHLDVSDLYGVPQNLITNSSLPPE 263

Query: 61  LYSWAAAGRTMSKT 74
           LY+WA AGRTMSKT
Sbjct: 264 LYTWATAGRTMSKT 277

[Close]

BLAST of MS024311 vs. ExPASy Swiss-Prot
Match: Q9SJG4 (AT-hook motif nuclear-localized protein 16 OS=Arabidopsis thaliana OX=3702 GN=AHL16 PE=1 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 4.6e-16
Identity = 41/72 (56.94%), Postives = 50/72 (69.44%), Query Frame = 0


Query: 1   MAATFMNATFDRLPSDDDEATAAMQSQHYQNGRSHHHLDVSDLYGVPQNLITNTTLPPDL 60
           MAA+FMNA FDRLP DDDEA +    Q+YQNGRS     + D++G+PQNL+TN     D+
Sbjct: 188 MAASFMNAVFDRLPMDDDEAASMQNQQYYQNGRSR---PLDDIHGLPQNLLTNGNSASDI 247

Query: 61  YSWAAAGRTMSK 73
           YSW  A R MSK
Sbjct: 248 YSWGPAQRVMSK 256

[Close]

BLAST of MS024311 vs. ExPASy TrEMBL
Match: A0A6J1C2K6 (AT-hook motif nuclear-localized protein 16 OS=Momordica charantia OX=3673 GN=LOC111007358 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 6.7e-34
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1   MAATFMNATFDRLPSDDDEATAAMQSQHYQNGRSHHHLDVSDLYGVPQNLITNTTLPPDL 60
           MAATFMNATFDRLPSDDDEATAAMQSQHYQNGRSHHHLDVSDLYGVPQNLITNTTLPPDL
Sbjct: 208 MAATFMNATFDRLPSDDDEATAAMQSQHYQNGRSHHHLDVSDLYGVPQNLITNTTLPPDL 267

Query: 61  YSWAAAGRTMSKT 74
           YSWAAAGRTMSKT
Sbjct: 268 YSWAAAGRTMSKT 280

[Close]

BLAST of MS024311 vs. ExPASy TrEMBL
Match: A0A0A0LS82 (PPC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G024960 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.1e-28
Identity = 65/74 (87.84%), Postives = 69/74 (93.24%), Query Frame = 0


Query: 1   MAATFMNATFDRLPSDDDEATAAMQSQHY-QNGRSHHHLDVSDLYGVPQNLITNTTLPPD 60
           MAATFMNATFDRLPSDD+E  A MQSQHY QNGRSHHHLDVSDLYGVPQNLITN++LPP+
Sbjct: 46  MAATFMNATFDRLPSDDEEVAATMQSQHYGQNGRSHHHLDVSDLYGVPQNLITNSSLPPE 105

Query: 61  LYSWAAAGRTMSKT 74
           LYSWA AGRTMSKT
Sbjct: 106 LYSWATAGRTMSKT 119

[Close]

BLAST of MS024311 vs. ExPASy TrEMBL
Match: A0A5A7USJ9 (AT-hook motif nuclear-localized protein 16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G001160 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.5e-28
Identity = 64/74 (86.49%), Postives = 69/74 (93.24%), Query Frame = 0


Query: 1   MAATFMNATFDRLPSDDDEATAAMQSQHY-QNGRSHHHLDVSDLYGVPQNLITNTTLPPD 60
           MAATFMNATFDRLPSDD+E  A MQSQHY QNGRSHHHLDVSDLYGVPQNLITN++LPP+
Sbjct: 204 MAATFMNATFDRLPSDDEEVAATMQSQHYGQNGRSHHHLDVSDLYGVPQNLITNSSLPPE 263

Query: 61  LYSWAAAGRTMSKT 74
           LY+WA AGRTMSKT
Sbjct: 264 LYTWATAGRTMSKT 277

[Close]

BLAST of MS024311 vs. ExPASy TrEMBL
Match: A0A6J1JFT0 (AT-hook motif nuclear-localized protein 16-like OS=Cucurbita maxima OX=3661 GN=LOC111485346 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.5e-28
Identity = 64/74 (86.49%), Postives = 70/74 (94.59%), Query Frame = 0


Query: 1   MAATFMNATFDRLPSDDDEATAAMQSQHY-QNGRSHHHLDVSDLYGVPQNLITNTTLPPD 60
           MAATFMNATFDRLPSDD+E  +A+QSQHY QNGRSHHH+DVSDLYGVPQNLITN+ LPP+
Sbjct: 186 MAATFMNATFDRLPSDDEEVASAIQSQHYGQNGRSHHHVDVSDLYGVPQNLITNSALPPE 245

Query: 61  LYSWAAAGRTMSKT 74
           LYSWAAAGRTMSKT
Sbjct: 246 LYSWAAAGRTMSKT 259

[Close]

BLAST of MS024311 vs. ExPASy TrEMBL
Match: A0A1S3BX46 (AT-hook motif nuclear-localized protein 16 OS=Cucumis melo OX=3656 GN=LOC103494172 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.5e-28
Identity = 64/74 (86.49%), Postives = 69/74 (93.24%), Query Frame = 0


Query: 1   MAATFMNATFDRLPSDDDEATAAMQSQHY-QNGRSHHHLDVSDLYGVPQNLITNTTLPPD 60
           MAATFMNATFDRLPSDD+E  A MQSQHY QNGRSHHHLDVSDLYGVPQNLITN++LPP+
Sbjct: 206 MAATFMNATFDRLPSDDEEVAATMQSQHYGQNGRSHHHLDVSDLYGVPQNLITNSSLPPE 265

Query: 61  LYSWAAAGRTMSKT 74
           LY+WA AGRTMSKT
Sbjct: 266 LYTWATAGRTMSKT 279

[Close]

BLAST of MS024311 vs. TAIR 10
Match: AT2G42940.1 (Predicted AT-hook DNA-binding family protein )

HSP 1 Score: 84.7 bits (208), Expect = 3.3e-17
Identity = 41/72 (56.94%), Postives = 50/72 (69.44%), Query Frame = 0


Query: 1   MAATFMNATFDRLPSDDDEATAAMQSQHYQNGRSHHHLDVSDLYGVPQNLITNTTLPPDL 60
           MAA+FMNA FDRLP DDDEA +    Q+YQNGRS     + D++G+PQNL+TN     D+
Sbjct: 188 MAASFMNAVFDRLPMDDDEAASMQNQQYYQNGRSR---PLDDIHGLPQNLLTNGNSASDI 247

Query: 61  YSWAAAGRTMSK 73
           YSW  A R MSK
Sbjct: 248 YSWGPAQRVMSK 256

The following BLAST results are available for this feature:

BLAST of MS024311 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135397.1	1.4e-33	100.00	AT-hook motif nuclear-localized protein 16 [Momordica charantia]	[more]
XP_038880552.1	2.7e-29	90.54	AT-hook motif nuclear-localized protein 16 [Benincasa hispida]	[more]
KAE8652473.1	2.3e-28	87.84	hypothetical protein Csa_013658 [Cucumis sativus]	[more]
XP_011649113.1	2.3e-28	87.84	AT-hook motif nuclear-localized protein 16 [Cucumis sativus]	[more]
KAA0058128.1	5.1e-28	86.49	AT-hook motif nuclear-localized protein 16 [Cucumis melo var. makuwa] >TYK28482....	[more]

BLAST of MS024311 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SJG4	4.6e-16	56.94	AT-hook motif nuclear-localized protein 16 OS=Arabidopsis thaliana OX=3702 GN=AH...	[more]

BLAST of MS024311 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C2K6	6.7e-34	100.00	AT-hook motif nuclear-localized protein 16 OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A0A0LS82	1.1e-28	87.84	PPC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G024960 PE=4 SV...	[more]
A0A5A7USJ9	2.5e-28	86.49	AT-hook motif nuclear-localized protein 16 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A6J1JFT0	2.5e-28	86.49	AT-hook motif nuclear-localized protein 16-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A1S3BX46	2.5e-28	86.49	AT-hook motif nuclear-localized protein 16 OS=Cucumis melo OX=3656 GN=LOC1034941...	[more]

BLAST of MS024311 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42940.1	3.3e-17	56.94	Predicted AT-hook DNA-binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..35
None	No IPR available	PANTHER	PTHR31100:SF48	AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 16	coord: 1..72
IPR014476	AT-hook motif nuclear-localized protein 15-29	PANTHER	PTHR31100	AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15	coord: 1..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS024311.1	MS024311.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003680	minor groove of adenine-thymine-rich DNA binding