MS024022 (gene) Bitter gourd (TR) v1

Overview
NameMS024022
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPentatricopeptide repeat-containing protein
Locationscaffold64: 704623 .. 707218 (-)
RNA-Seq ExpressionMS024022
SyntenyMS024022
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAGGAAGAGTAGCGGTGTCTCATGGGTTGAGGTCGTCAAATCTTTAGTTTTGACGTGTAATAGCTTTGGGTTGATTCCTTTGGTTTCAAATTGTTGGTAAGGACTTATGTGCAAACTAGAAAGTTAAGAGAAGGATCCGAAGCATTTCAAATATTGAGGAGCAAAGGAGTTTCTGTTTCTATAAATGCTTGTAATAATCTCCTAAGTGGTCTTGAGAAGATTGGGTGGGTCGATTTAGCTTGGGAAATATATTGCGAAGTTGTAAGAGGGGGTATTAAGTTGAATACTTATGCCCTGAATATAATGGTCAATGCTTTATATAAAGATCGAAAAATTGAGAATGTGAATATGTTCTTATCATATATGGAAAAGAAAGGAATTTTTTCCGACATTGTGACGTACAATACTCTAATTAGTGCTTACTGTTGTGAAGGACTCGTTGAAGAAACATTTGAGCTATTGAATTCAGTCTCTAGTAAGGGTATGAAAGCAGACATTCTAAATTATAATGCTCTCATAAATGGCTTGTGCAAGATGGATAAGTATAGCAGCACAAAGCACGTTTTGAATGAGAGGTTGCAACTTGGGTTAAGGCTTGATACTACTACATAGAACACTTTGCTTGTTAAGATTTGTTGAAGAGATGATATTTCAAAAGCTTGAGAGATCTTTGACGAAATGTCACGTCATGGCATGCATCCTGATCTAATTAGCTTTAATTCTATGATTGGTGTGCTTTCGAGGAATGGGAATCTTAATCGGGCTCATATGTGTTTTAGAGAAATGAAAAGTGTTAGGTGTAGTGCCTGATAATGTAATTCATACTACACTTATAGATGGGTTTTGTCAAAATGGTGTCATTTCAAATGCTTTGGAAATGTGGTATGATATGCTTGCTCGGGGCTGTGTTATGGATGTGGTTGCGTACAATACTACTTTGAATGGGTTATGCAAGAAAAAGATGTACGCTGACGCATATATATTGTTTAATGAAATGGTTGAGAGGGATGTGTTTCCAGACTTTTATAGTTTCACCACACTCGTAAATGGATATTGCAAGGATGACAATATGGATAAAGCGCTAAGTTTGTTTGGAACGATGATTCATACAAACCTCAAGTCAGATATTGGATGCATTTCGTTTCCATGATGAAATGCTATAAAGAGGATTCGTGCCAGATGATAGATTTTAAATTTGTGCCTGCAGCTACACGCATTTCAGCTTTATGCTATCATAGATGTTCCTTTTGTTTGCCACTCTATTCATCTATCAATCGGTATGTCAGTTCTATTGACTATGTTTTCTAGTAGCTTAATATGAGGGTGCCATTTTCTCACTGATACTAAGTTAATCATCCATACAGAATACTTCATATCTGATATGAGCTTGAATGCTAATACTTCTACTTGGATGAATTTGACTCTCCTTAATTATGATTACAGAGAACCAAAGTTCTAATCATCCCAAGTAATGGATCCTCCTTACTTTGAACTAGGCCTTTTATTTCATTTTTATAATTTTAGAAACACTTTTATAGATGATATGAAACTTAAAAAATAAAATGACGAAAGTCAAGCCATGAGCCAATGTAGATAATAAAAAACTCTTCGGAGTAGCACCAAGAGTATCAACACTATAATTTTTGAAAGGGGAGACAAGTTTCTATGTAAAAATAATCTATGGATTTTCCCTTCTAGTTAAAAATCTTATTGTTTCTCTCAAGCTAAGGAGACTTATTTATTTCTAGTCATTATTTTCTACCTTCTTGATCTAAGATAATTTCATGTTCTTTCTTATTAAGTTTATCCCAGAAATCAAAATTCTCTACAACTTTTTGAATTTTTCCTACCTCTGGATTTATCTCAGAAATCAAAACTCTCTACTCGTACTCTTTAGTTCATGGGTCATATCTTTACATTAAATTATCATGATTATGATAGTTTACAAGAAATTTAATCTTTAGTTCATATTCTTCACCCTTTTCTTCACTCGTGGGCTTAATATTATTAAATTAATACTCAACAGCTGACCATTATTGATATGATCGATGTTGATAGAAGAGAAAATTGCATTGATATGTGATTTGAACACGGGAACTTTGACGTACAATGTTAATTAACTTATCATTAAACCCAAAAGGGTAAATTAATGTCTTTTTTGTTTATATACTTCCCACTTTCTCCGCCTACATTTTTAGCCTTGTTAATTACAGTTCCTTCTACTTTCTCTATATAATTTCTTGTGCCTTGTATATTTTTTCACGTTTCTCAATTAAAACTCGGTTTCTTATTATAAAAAATATATATATTCTCGGTATACCTCTGGCGGTGTATAAATCTTACTTTCTTAAATTGACATCTTATCCTTCCTAGTTTTCCTTGACTATTGTAGTTACTAACTTGTGAGCATTTATCAGAAGTGATTACTAGTAATCGGCACCGGAATTGTTGCAAACAGAATTTGCCATTTGTGTCACAGGGAGAGACCAGTTGGCTTGTCGCTTGTCATGGCAGATCGGGCGAAAAAACCAGATGCATCCGAGAAAGGAGCCAAGGAAAAAGAAGGCATGGAGCCACAATTAGCTCAATGA

mRNA sequence

ATGGTGAGGAAGAGTAGCGGTGTCTCATGGGTTGAGGTCGTCAAATCTTTAGTTTTGACGTGTAATAGCTTTGGGTTGATTCCTTTGGTTTCAAATTGTTGTGCTTACTGTTGTGAAGGACTCGTTGAAGAAACATTTGAGCTATTGAATTCAGTCTCTAGTAAGGATGGGTTTTGTCAAAATGGTGTCATTTCAAATGCTTTGGAAATGTGGTATGATATGCTTGCTCGGGGCTGTGTTATGGATGTGGTTGCGTACAATACTACTTTGAATGGGTTATGCAAGAAAAAGATGGAGAGACCAGTTGGCTTGTCGCTTGTCATGGCAGATCGGGCGAAAAAACCAGATGCATCCGAGAAAGGAGCCAAGGAAAAAGAAGGCATGGAGCCACAATTAGCTCAATGA

Coding sequence (CDS)

ATGGTGAGGAAGAGTAGCGGTGTCTCATGGGTTGAGGTCGTCAAATCTTTAGTTTTGACGTGTAATAGCTTTGGGTTGATTCCTTTGGTTTCAAATTGTTGTGCTTACTGTTGTGAAGGACTCGTTGAAGAAACATTTGAGCTATTGAATTCAGTCTCTAGTAAGGATGGGTTTTGTCAAAATGGTGTCATTTCAAATGCTTTGGAAATGTGGTATGATATGCTTGCTCGGGGCTGTGTTATGGATGTGGTTGCGTACAATACTACTTTGAATGGGTTATGCAAGAAAAAGATGGAGAGACCAGTTGGCTTGTCGCTTGTCATGGCAGATCGGGCGAAAAAACCAGATGCATCCGAGAAAGGAGCCAAGGAAAAAGAAGGCATGGAGCCACAATTAGCTCAATGA

Protein sequence

MVRKSSGVSWVEVVKSLVLTCNSFGLIPLVSNCCAYCCEGLVEETFELLNSVSSKDGFCQNGVISNALEMWYDMLARGCVMDVVAYNTTLNGLCKKKMERPVGLSLVMADRAKKPDASEKGAKEKEGMEPQLAQ
Homology
[Close]
BLAST of MS024022 vs. NCBI nr
Match: XP_022153215.1 (pentatricopeptide repeat-containing protein At5g01110 [Momordica charantia] >XP_022153216.1 pentatricopeptide repeat-containing protein At5g01110 [Momordica charantia] >XP_022153217.1 pentatricopeptide repeat-containing protein At5g01110 [Momordica charantia] >XP_022153219.1 pentatricopeptide repeat-containing protein At5g01110 [Momordica charantia] >XP_022153220.1 pentatricopeptide repeat-containing protein At5g01110 [Momordica charantia] >XP_022153221.1 pentatricopeptide repeat-containing protein At5g01110 [Momordica charantia])

HSP 1 Score: 75.1 bits (183), Expect = 5.1e-10
Identity = 34/43 (79.07%), Postives = 39/43 (90.70%), Query Frame = 0 

Query: 56  DGFCQNGVISNALEMWYDMLARGCVMDVVAYNTTLNGLCKKKM 99
           DGFC+NG IS+AL+M  +MLA+GCVMDVVAYNT LNGLCKKKM
Sbjct: 438 DGFCRNGAISDALKMRDEMLAQGCVMDVVAYNTILNGLCKKKM 480

[Close]
BLAST of MS024022 vs. NCBI nr
Match: KAG6588214.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 73.6 bits (179), Expect = 1.5e-09
Identity = 33/43 (76.74%), Postives = 39/43 (90.70%), Query Frame = 0 

Query: 56  DGFCQNGVISNALEMWYDMLARGCVMDVVAYNTTLNGLCKKKM 99
           DGFC+NG IS+AL+M  +MLA+GCV+DVVAYNT LNGLCKKKM
Sbjct: 446 DGFCRNGAISDALKMRDEMLAQGCVVDVVAYNTILNGLCKKKM 488

[Close]
BLAST of MS024022 vs. NCBI nr
Match: KAG7022113.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 73.6 bits (179), Expect = 1.5e-09
Identity = 33/43 (76.74%), Postives = 39/43 (90.70%), Query Frame = 0 

Query: 56  DGFCQNGVISNALEMWYDMLARGCVMDVVAYNTTLNGLCKKKM 99
           DGFC+NG IS+AL+M  +MLA+GCV+DVVAYNT LNGLCKKKM
Sbjct: 439 DGFCRNGAISDALKMRDEMLAQGCVVDVVAYNTILNGLCKKKM 481

[Close]
BLAST of MS024022 vs. NCBI nr
Match: XP_022973817.1 (pentatricopeptide repeat-containing protein At5g01110 [Cucurbita maxima] >XP_022973822.1 pentatricopeptide repeat-containing protein At5g01110 [Cucurbita maxima])

HSP 1 Score: 73.6 bits (179), Expect = 1.5e-09
Identity = 33/43 (76.74%), Postives = 39/43 (90.70%), Query Frame = 0 

Query: 56  DGFCQNGVISNALEMWYDMLARGCVMDVVAYNTTLNGLCKKKM 99
           DGFC+NG IS+AL+M  +MLA+GCV+DVVAYNT LNGLCKKKM
Sbjct: 447 DGFCRNGAISDALKMRDEMLAQGCVVDVVAYNTILNGLCKKKM 489

[Close]
BLAST of MS024022 vs. NCBI nr
Match: XP_022933790.1 (pentatricopeptide repeat-containing protein At5g01110 [Cucurbita moschata])

HSP 1 Score: 73.6 bits (179), Expect = 1.5e-09
Identity = 33/43 (76.74%), Postives = 39/43 (90.70%), Query Frame = 0 

Query: 56  DGFCQNGVISNALEMWYDMLARGCVMDVVAYNTTLNGLCKKKM 99
           DGFC+NG IS+AL+M  +MLA+GCV+DVVAYNT LNGLCKKKM
Sbjct: 446 DGFCRNGAISDALKMRDEMLAQGCVVDVVAYNTILNGLCKKKM 488

[Close]
BLAST of MS024022 vs. ExPASy Swiss-Prot
Match: Q9LFC5 (Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana OX=3702 GN=At5g01110 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 6.5e-08
Identity = 30/62 (48.39%), Postives = 41/62 (66.13%), Query Frame = 0 

Query: 57  GFCQNGVISNALEMWYDMLARGCVMDVVAYNTTLNGLCKKKMERPVG-LSLVMADRAKKP 116
           G+C+ G+IS A+ +  +ML +GC MDVV YNT L+GLCK+KM      L   M +RA  P
Sbjct: 419 GYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFP 478

Query: 117 DA 118
           D+
Sbjct: 479 DS 480

[Close]
BLAST of MS024022 vs. ExPASy Swiss-Prot
Match: Q940A6 (Pentatricopeptide repeat-containing protein At4g19440, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g19440 PE=2 SV=2)

HSP 1 Score: 50.4 bits (119), Expect = 1.8e-05
Identity = 25/61 (40.98%), Postives = 35/61 (57.38%), Query Frame = 0 

Query: 57  GFCQNGVISNALEMWYDMLARGCVMDVVAYNTTLNGLC-KKKMERPVGLSLVMADRAKKP 116
           G C+ G +  A  +  ++L RGCVMD V+YNT ++G C KKK++        M  R  KP
Sbjct: 527 GLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKP 586

[Close]
BLAST of MS024022 vs. ExPASy Swiss-Prot
Match: Q9FLL3 (Pentatricopeptide repeat-containing protein At5g41170, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g41170 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 4.0e-05
Identity = 20/42 (47.62%), Postives = 27/42 (64.29%), Query Frame = 0 

Query: 56  DGFCQNGVISNALEMWYDMLARGCVMDVVAYNTTLNGLCKKK 98
           +GFC  G +  A +M+Y M  +GC  DVVAY + +NG CK K
Sbjct: 290 NGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCK 331

[Close]
BLAST of MS024022 vs. ExPASy Swiss-Prot
Match: Q9FNL2 (Pentatricopeptide repeat-containing protein At5g46100 OS=Arabidopsis thaliana OX=3702 GN=At5g46100 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 5.2e-05
Identity = 28/70 (40.00%), Postives = 41/70 (58.57%), Query Frame = 0 

Query: 53  SSKDGFCQNGVISNALEMWYDMLARGCVMDVVAYNTTLNGLCK-KKMERPVGLSLVMADR 112
           S  DG C++G    A+E++  M+ARGC  ++V Y T + GLCK +K++  V L   M  +
Sbjct: 267 SLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQ 326

Query: 113 AKKPDASEKG 122
             KPDA   G
Sbjct: 327 GLKPDAGLYG 336

[Close]
BLAST of MS024022 vs. ExPASy Swiss-Prot
Match: Q9XIM8 (Pentatricopeptide repeat-containing protein At2g15980 OS=Arabidopsis thaliana OX=3702 GN=At2g15980 PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 6.8e-05
Identity = 22/56 (39.29%), Postives = 34/56 (60.71%), Query Frame = 0 

Query: 56  DGFCQNGVISNALEMWYDMLARGCVMDVVAYNTTLNGLCK-------KKMERPVGL 105
           + +C  G++S A ++W +M  RG V D+VAYNT + GLC        K++ R +GL
Sbjct: 289 EAYCARGLMSEAEKVWEEMKVRGVVYDIVAYNTMIGGLCSNFEVVKAKELFRDMGL 344

[Close]
BLAST of MS024022 vs. ExPASy TrEMBL
Match: A0A6J1DJZ9 (pentatricopeptide repeat-containing protein At5g01110 OS=Momordica charantia OX=3673 GN=LOC111020766 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.5e-10
Identity = 34/43 (79.07%), Postives = 39/43 (90.70%), Query Frame = 0 

Query: 56  DGFCQNGVISNALEMWYDMLARGCVMDVVAYNTTLNGLCKKKM 99
           DGFC+NG IS+AL+M  +MLA+GCVMDVVAYNT LNGLCKKKM
Sbjct: 438 DGFCRNGAISDALKMRDEMLAQGCVMDVVAYNTILNGLCKKKM 480

[Close]
BLAST of MS024022 vs. ExPASy TrEMBL
Match: A0A6J1I8K2 (pentatricopeptide repeat-containing protein At5g01110 OS=Cucurbita maxima OX=3661 GN=LOC111472364 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 7.2e-10
Identity = 33/43 (76.74%), Postives = 39/43 (90.70%), Query Frame = 0 

Query: 56  DGFCQNGVISNALEMWYDMLARGCVMDVVAYNTTLNGLCKKKM 99
           DGFC+NG IS+AL+M  +MLA+GCV+DVVAYNT LNGLCKKKM
Sbjct: 447 DGFCRNGAISDALKMRDEMLAQGCVVDVVAYNTILNGLCKKKM 489

[Close]
BLAST of MS024022 vs. ExPASy TrEMBL
Match: A0A6J1F5T7 (pentatricopeptide repeat-containing protein At5g01110 OS=Cucurbita moschata OX=3662 GN=LOC111441098 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 7.2e-10
Identity = 33/43 (76.74%), Postives = 39/43 (90.70%), Query Frame = 0 

Query: 56  DGFCQNGVISNALEMWYDMLARGCVMDVVAYNTTLNGLCKKKM 99
           DGFC+NG IS+AL+M  +MLA+GCV+DVVAYNT LNGLCKKKM
Sbjct: 446 DGFCRNGAISDALKMRDEMLAQGCVVDVVAYNTILNGLCKKKM 488

[Close]
BLAST of MS024022 vs. ExPASy TrEMBL
Match: A0A0A0M2X0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G627440 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.1e-09
Identity = 36/62 (58.06%), Postives = 43/62 (69.35%), Query Frame = 0 

Query: 56  DGFCQNGVISNALEMWYDMLARGCVMDVVAYNTTLNGLCKKKMERPVGLSL-VMADRAKK 115
           DGFC+NG +S+AL+M  +MLARGC MDVV YNT LNGLCKKKM     +    M +R   
Sbjct: 158 DGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMV 217

Query: 116 PD 117
           PD
Sbjct: 218 PD 219

[Close]
BLAST of MS024022 vs. ExPASy TrEMBL
Match: A0A6P3Z254 (pentatricopeptide repeat-containing protein At5g01110 OS=Ziziphus jujuba OX=326968 GN=LOC107405656 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 8.0e-09
Identity = 27/43 (62.79%), Postives = 37/43 (86.05%), Query Frame = 0 

Query: 56  DGFCQNGVISNALEMWYDMLARGCVMDVVAYNTTLNGLCKKKM 99
           DG+C+NG++S AL MW +M+ +GCVMDVV YNT LNG+C++KM
Sbjct: 437 DGYCKNGIMSEALMMWNEMVQQGCVMDVVTYNTLLNGMCREKM 479

[Close]
BLAST of MS024022 vs. TAIR 10
Match: AT5G01110.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 58.5 bits (140), Expect = 4.6e-09
Identity = 30/62 (48.39%), Postives = 41/62 (66.13%), Query Frame = 0 

Query: 57  GFCQNGVISNALEMWYDMLARGCVMDVVAYNTTLNGLCKKKMERPVG-LSLVMADRAKKP 116
           G+C+ G+IS A+ +  +ML +GC MDVV YNT L+GLCK+KM      L   M +RA  P
Sbjct: 419 GYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFP 478

Query: 117 DA 118
           D+
Sbjct: 479 DS 480

[Close]
BLAST of MS024022 vs. TAIR 10
Match: AT4G19440.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 50.4 bits (119), Expect = 1.3e-06
Identity = 25/61 (40.98%), Postives = 35/61 (57.38%), Query Frame = 0 

Query: 57  GFCQNGVISNALEMWYDMLARGCVMDVVAYNTTLNGLC-KKKMERPVGLSLVMADRAKKP 116
           G C+ G +  A  +  ++L RGCVMD V+YNT ++G C KKK++        M  R  KP
Sbjct: 514 GLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKP 573

[Close]
BLAST of MS024022 vs. TAIR 10
Match: AT4G19440.2 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 50.4 bits (119), Expect = 1.3e-06
Identity = 25/61 (40.98%), Postives = 35/61 (57.38%), Query Frame = 0 

Query: 57  GFCQNGVISNALEMWYDMLARGCVMDVVAYNTTLNGLC-KKKMERPVGLSLVMADRAKKP 116
           G C+ G +  A  +  ++L RGCVMD V+YNT ++G C KKK++        M  R  KP
Sbjct: 514 GLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKP 573

[Close]
BLAST of MS024022 vs. TAIR 10
Match: AT5G41170.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 49.3 bits (116), Expect = 2.8e-06
Identity = 20/42 (47.62%), Postives = 27/42 (64.29%), Query Frame = 0 

Query: 56  DGFCQNGVISNALEMWYDMLARGCVMDVVAYNTTLNGLCKKK 98
           +GFC  G +  A +M+Y M  +GC  DVVAY + +NG CK K
Sbjct: 290 NGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCK 331

[Close]
BLAST of MS024022 vs. TAIR 10
Match: AT5G46100.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 48.9 bits (115), Expect = 3.7e-06
Identity = 28/70 (40.00%), Postives = 41/70 (58.57%), Query Frame = 0 

Query: 53  SSKDGFCQNGVISNALEMWYDMLARGCVMDVVAYNTTLNGLCK-KKMERPVGLSLVMADR 112
           S  DG C++G    A+E++  M+ARGC  ++V Y T + GLCK +K++  V L   M  +
Sbjct: 267 SLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQ 326

Query: 113 AKKPDASEKG 122
             KPDA   G
Sbjct: 327 GLKPDAGLYG 336

The following BLAST results are available for this feature:
BLAST of MS024022 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022153215.15.1e-1079.07pentatricopeptide repeat-containing protein At5g01110 [Momordica charantia] >XP_... [more]
KAG6588214.11.5e-0976.74Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
KAG7022113.11.5e-0976.74Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
XP_022973817.11.5e-0976.74pentatricopeptide repeat-containing protein At5g01110 [Cucurbita maxima] >XP_022... [more]
XP_022933790.11.5e-0976.74pentatricopeptide repeat-containing protein At5g01110 [Cucurbita moschata][more]
BLAST of MS024022 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LFC56.5e-0848.39Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana OX... [more]
Q940A61.8e-0540.98Pentatricopeptide repeat-containing protein At4g19440, chloroplastic OS=Arabidop... [more]
Q9FLL34.0e-0547.62Pentatricopeptide repeat-containing protein At5g41170, mitochondrial OS=Arabidop... [more]
Q9FNL25.2e-0540.00Pentatricopeptide repeat-containing protein At5g46100 OS=Arabidopsis thaliana OX... [more]
Q9XIM86.8e-0539.29Pentatricopeptide repeat-containing protein At2g15980 OS=Arabidopsis thaliana OX... [more]
BLAST of MS024022 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DJZ92.5e-1079.07pentatricopeptide repeat-containing protein At5g01110 OS=Momordica charantia OX=... [more]
A0A6J1I8K27.2e-1076.74pentatricopeptide repeat-containing protein At5g01110 OS=Cucurbita maxima OX=366... [more]
A0A6J1F5T77.2e-1076.74pentatricopeptide repeat-containing protein At5g01110 OS=Cucurbita moschata OX=3... [more]
A0A0A0M2X02.1e-0958.06Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G627440 PE=4 SV=1[more]
A0A6P3Z2548.0e-0962.79pentatricopeptide repeat-containing protein At5g01110 OS=Ziziphus jujuba OX=3269... [more]
BLAST of MS024022 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G01110.14.6e-0948.39Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT4G19440.11.3e-0640.98Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT4G19440.21.3e-0640.98Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT5G41170.12.8e-0647.62Pentatricopeptide repeat (PPR-like) superfamily protein [more]
AT5G46100.13.7e-0640.00Pentatricopeptide repeat (PPR) superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 56..95
e-value: 2.0E-8
score: 34.3
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 56..83
e-value: 2.5E-5
score: 22.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 4..116
e-value: 7.5E-10
score: 40.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 110..134
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 112..127
NoneNo IPR availablePANTHERPTHR47932:SF12OS01G0153250 PROTEINcoord: 56..116
NoneNo IPR availablePANTHERPTHR47932ATPASE EXPRESSION PROTEIN 3coord: 56..116

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS024022.1MS024022.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding