MS024016 (gene) Bitter gourd (TR) v1

Overview
NameMS024016
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCCHC-type domain-containing protein
Locationscaffold64: 526816 .. 527982 (+)
RNA-Seq ExpressionMS024016
SyntenyMS024016
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTTGGGAGATACAAATGAAGACTTTGAGATGGGGGTTGAAACTCTCCTGGAAGATGCTTCCAGTGATGAAGAGGGAGATTCATATCCCTCGAATGATGTGAAATTTTCAAAAGAACAATGGAAGAATTTTAGGGCACTATCGAGGTCTGCCCTAATTATAAAAGTTCTAGGCAAGTCTTTTGGGTACCCATTTCTTCTCCGAAGGTTAACGGCAATCTGGAAACTGAAAGGGCATTTCAAGTTGATCAACCTTAGTAATGAGTTCTTTATTGCGCGTCTGGACTTGAAGGAGGATCGAGACAGGGTTCTTATGGAGGGCCCCTGGAAGATTTTAGACCACTACCTTGCGGTTCGGAGTTGGTCTCCCAAATTTAGGCCTTCAACAGTGACTATTGACAGGGCTGCTTTGTGGGTTCGTATCCCTGATTGCCCGATGGAACTTTATAATGAGACAGGAATGAAGGGAATCGGGCATTTCATAGGCAAGACTCTAAAAATTGATTTCAAGACTCAATCCGGGAAGATGGGCCACTTTGCGAGAATCTACGTTGAGGTGGACCTTACGAAGAAGCCTCGACGTGACTTTACAATTTTATGAGAAAGGTATGGAATCCAATATGAAGGGATACATTTAGTCTGTTTCAACTGTGGGGTGTATGGGCACAAATTTGAGGAGTGTCCCTTGAGATGCAACACTGAAACGAAGGCTAACGATAACTCATCTGGAATTCTTGATTCCGTTGGTGGAGATTCGAGGGTTCCAAAGGAAAGCAATATCTCTGAGTTTTCTCAAAAGCCTTTCATACCAGTGCCAGTTTCTCAGCCAAATCGTTCACCTGGTCATGGGCCTTGGATGTTGGTAGATCATTCCAAGAGAAATGGGGGAGGTAAACCACCTCGTACAAGGTCAGAGAGAGGTTTCGTATCATCTAAAAACTTGAACACTAAGTGGAATGCAAATCTGGACCCAAATGAAGAGTCGACGAATGTTCTTGACCCAATTGTTGATCCAACTGTGGAGCGTGATCCTATAAAGTCTTTCCAAGTTAAGTCAGTTGAGAGGGTGAGGTTAGCAAGAGATCAAGACTCTTGGAGGTTTAAGAACAAGATTCCTTTTGCTGGACCTGGGGCAAATTTTTCAGGTCTTCCTTTCAATTATTAG

mRNA sequence

ATGGTTTTGGGAGATACAAATGAAGACTTTGAGATGGGGGTTGAAACTCTCCTGGAAGATGCTTCCAGTGATGAAGAGGGAGATTCATATCCCTCGAATGATGTGAAATTTTCAAAAGAACAATGGAAGAATTTTAGGGCACTATCGAGGTCTGCCCTAATTATAAAAGTTCTAGGCAAGTCTTTTGGGTACCCATTTCTTCTCCGAAGGTTAACGGCAATCTGGAAACTGAAAGGGCATTTCAAGTTGATCAACCTTAGTAATGAGTTCTTTATTGCGCGTCTGGACTTGAAGGAGGATCGAGACAGGGTTCTTATGGAGGGCCCCTGGAAGATTTTAGACCACTACCTTGCGGTTCGGAGTTGGTCTCCCAAATTTAGGCCTTCAACAGTGACTATTGACAGGGCTGCTTTGTGGGTTCGTATCCCTGATTGCCCGATGGAACTTTATAATGAGACAGGAATGAAGGGAATCGGGCATTTCATAGGCAAGACTCTAAAAATTGATTTCAAGACTCAATCCGGGAAGATGGGCCACTTTGCGAGAATCTACGTTGAGGTGGACCTTACGAAGAAGCCTCGACGTGACTTTACAATTTTATGAGAAAGGTATGGAATCCAATATGAAGGGATACATTTAGTCTGTTTCAACTGTGGGGTGTATGGGCACAAATTTGAGGAGTGTCCCTTGAGATGCAACACTGAAACGAAGGCTAACGATAACTCATCTGGAATTCTTGATTCCGTTGGTGGAGATTCGAGGGTTCCAAAGGAAAGCAATATCTCTGAGTTTTCTCAAAAGCCTTTCATACCAGTGCCAGTTTCTCAGCCAAATCGTTCACCTGGTCATGGGCCTTGGATGTTGGTAGATCATTCCAAGAGAAATGGGGGAGGTAAACCACCTCGTACAAGGTCAGAGAGAGGTTTCGTATCATCTAAAAACTTGAACACTAAGTGGAATGCAAATCTGGACCCAAATGAAGAGTCGACGAATGTTCTTGACCCAATTGTTGATCCAACTGTGGAGCGTGATCCTATAAAGTCTTTCCAAGTTAAGTCAGTTGAGAGGGTGAGGTTAGCAAGAGATCAAGACTCTTGGAGGTTTAAGAACAAGATTCCTTTTGCTGGACCTGGGGCAAATTTTTCAGGTCTTCCTTTCAATTATTAG

Coding sequence (CDS)

ATGGTTTTGGGAGATACAAATGAAGACTTTGAGATGGGGGTTGAAACTCTCCTGGAAGATGCTTCCAGTGATGAAGAGGGAGATTCATATCCCTCGAATGATGTGAAATTTTCAAAAGAACAATGGAAGAATTTTAGGGCACTATCGAGGTCTGCCCTAATTATAAAAGTTCTAGGCAAGTCTTTTGGGTACCCATTTCTTCTCCGAAGGTTAACGGCAATCTGGAAACTGAAAGGGCATTTCAAGTTGATCAACCTTAGTAATGAGTTCTTTATTGCGCGTCTGGACTTGAAGGAGGATCGAGACAGGGTTCTTATGGAGGGCCCCTGGAAGATTTTAGACCACTACCTTGCGGTTCGGAGTTGGTCTCCCAAATTTAGGCCTTCAACAGTGACTATTGACAGGGCTGCTTTGTGGGTTCGTATCCCTGATTGCCCGATGGAACTTTATAATGAGACAGGAATGAAGGGAATCGGGCATTTCATAGGCAAGACTCTAAAAATTGATTTCAAGACTCAATCCGGGAAGATGGGCCACTTTGCGAGAATCTACGTTGAGGTGGACCTTACGAAGAAGCCTCGACGTGACTTTACAATTTTATGAGAAAGGTATGGAATCCAATATGAAGGGATACATTTAGTCTGTTTCAACTGTGGGGTGTATGGGCACAAATTTGAGGAGTGTCCCTTGAGATGCAACACTGAAACGAAGGCTAACGATAACTCATCTGGAATTCTTGATTCCGTTGGTGGAGATTCGAGGGTTCCAAAGGAAAGCAATATCTCTGAGTTTTCTCAAAAGCCTTTCATACCAGTGCCAGTTTCTCAGCCAAATCGTTCACCTGGTCATGGGCCTTGGATGTTGGTAGATCATTCCAAGAGAAATGGGGGAGGTAAACCACCTCGTACAAGGTCAGAGAGAGGTTTCGTATCATCTAAAAACTTGAACACTAAGTGGAATGCAAATCTGGACCCAAATGAAGAGTCGACGAATGTTCTTGACCCAATTGTTGATCCAACTGTGGAGCGTGATCCTATAAAGTCTTTCCAAGTTAAGTCAGTTGAGAGGGTGAGGTTAGCAAGAGATCAAGACTCTTGGAGGTTTAAGAACAAGATTCCTTTTGCTGGACCTGGGGCAAATTTTTCAGGTCTTCCTTTCAATTATTAG

Protein sequence

MVLGDTNEDFEMGVETLLEDASSDEEGDSYPSNDVKFSKEQWKNFRALSRSALIIKVLGKSFGYPFLLRRLTAIWKLKGHFKLINLSNEFFIARLDLKEDRDRVLMEGPWKILDHYLAVRSWSPKFRPSTVTIDRAALWVRIPDCPMELYNETGMKGIGHFIGKTLKIDFKTQSGKMGHFARIYVEVDLTKKPRRDFTILUERYGIQYEGIHLVCFNCGVYGHKFEECPLRCNTETKANDNSSGILDSVGGDSRVPKESNISEFSQKPFIPVPVSQPNRSPGHGPWMLVDHSKRNGGGKPPRTRSERGFVSSKNLNTKWNANLDPNEESTNVLDPIVDPTVERDPIKSFQVKSVERVRLARDQDSWRFKNKIPFAGPGANFSGLPFNY
Homology
BLAST of MS024016 vs. NCBI nr
Match: XP_022153253.1 (uncharacterized protein LOC111020790 [Momordica charantia])

HSP 1 Score: 335.5 bits (859), Expect = 6.1e-88
Identity = 159/180 (88.33%), Postives = 165/180 (91.67%), Query Frame = 0

Query: 209 EGIHLVCFNCGVYGHKFEECPLRCNTETKANDNSSGILDSVGGDSRVPKESNISEFSQKP 268
           +GIHLVCFNCGVYGHK EECPLRCNTETK NDNSSGILDSVG DSRVPKESNI EF QKP
Sbjct: 6   KGIHLVCFNCGVYGHKLEECPLRCNTETKVNDNSSGILDSVGADSRVPKESNIPEFPQKP 65

Query: 269 FIPVPVSQPNRSPGHGPWMLVDHSKRNGGGKPPRTRSERGFVSSKNLNTKWNANLDPNEE 328
           FIPV VSQ N SPGHGPWMLVDHSKRNGGGKPPRTRS RGF+SSKNLNTKWN N DPNEE
Sbjct: 66  FIPVTVSQLNPSPGHGPWMLVDHSKRNGGGKPPRTRSGRGFISSKNLNTKWNLNSDPNEE 125

Query: 329 STNVLDPIVDPTVERDPIKSFQVKSVERVRLARDQDSWRFKNKIPFAGPGANFSGLPFNY 388
             NVLD IVDPT++RDPIKSFQ+KSVERVRLARDQDSWRFKNKIPFAGPGANFS LPF+Y
Sbjct: 126 PMNVLDTIVDPTMKRDPIKSFQIKSVERVRLARDQDSWRFKNKIPFAGPGANFSSLPFDY 185

BLAST of MS024016 vs. NCBI nr
Match: XP_034894450.1 (uncharacterized protein LOC118033543 isoform X2 [Populus alba])

HSP 1 Score: 221.5 bits (563), Expect = 1.3e-53
Identity = 110/273 (40.29%), Postives = 155/273 (56.78%), Query Frame = 0

Query: 19  EDASSDEEGDSYPSND---VKFSKEQWKNFRALSRSALIIKVLGKSFGYPFLLRRLTAIW 78
           ED +SD++ +     D   ++ S E+ K  R   R  LIIKVLG+   Y FLL+RL  +W
Sbjct: 68  EDFASDDDEEDEEEEDCPVIRLSMEEKKRIREPWRQTLIIKVLGRRVSYTFLLKRLQIMW 127

Query: 79  KLKGHFKLINLSNEFFIARLDLKEDRDRVLMEGPWKILDHYLAVRSWSPKFRPSTVTIDR 138
           K++G   L++L N+FF+AR   KEDR+  +  GPW + DHYL +RSW P F P+  TI++
Sbjct: 128 KIQGDMNLVDLGNDFFLARFSNKEDREFAMSGGPWMVADHYLTMRSWHPNFDPNVATIEK 187

Query: 139 AALWVRIPDCPMELYNETGMKGIGHFIGKTLKIDFKTQSGKMGHFARIYVEVDLTKKPRR 198
            A+W+R+PD  ME Y+   +  IG+ IGKTLK+D  T  G  G++ARI VEVDLTK    
Sbjct: 188 VAVWIRLPDLAMEYYDTAVLWKIGNHIGKTLKVDRTTSVGMRGNYARICVEVDLTKPLLS 247

Query: 199 DFTILXERYGIQYEGIHLVCFNCGVYGHKFEECPLRCNTETKANDNSSGILDSVGGDSRV 258
            F +      I YEG+H++CF CG YGHK + CP   N E + ++      +  G D  V
Sbjct: 248 KFKLRRRIRRISYEGLHMICFGCGQYGHKHDMCPFSMNKEDRNDEQQVSSNNGKGRDPTV 307

Query: 259 PKESNISEFSQKPFIPVPVSQPNRSPGHGPWML 289
           P E               V +P  +  +G WM+
Sbjct: 308 PAEDT-------------VVRPEVAENYGQWMV 327

BLAST of MS024016 vs. NCBI nr
Match: XP_034894449.1 (uncharacterized protein LOC118033543 isoform X1 [Populus alba])

HSP 1 Score: 221.5 bits (563), Expect = 1.3e-53
Identity = 110/273 (40.29%), Postives = 155/273 (56.78%), Query Frame = 0

Query: 19  EDASSDEEGDSYPSND---VKFSKEQWKNFRALSRSALIIKVLGKSFGYPFLLRRLTAIW 78
           ED +SD++ +     D   ++ S E+ K  R   R  LIIKVLG+   Y FLL+RL  +W
Sbjct: 68  EDFASDDDEEDEEEEDCPVIRLSMEEKKRIREPWRQTLIIKVLGRRVSYTFLLKRLQIMW 127

Query: 79  KLKGHFKLINLSNEFFIARLDLKEDRDRVLMEGPWKILDHYLAVRSWSPKFRPSTVTIDR 138
           K++G   L++L N+FF+AR   KEDR+  +  GPW + DHYL +RSW P F P+  TI++
Sbjct: 128 KIQGDMNLVDLGNDFFLARFSNKEDREFAMSGGPWMVADHYLTMRSWHPNFDPNVATIEK 187

Query: 139 AALWVRIPDCPMELYNETGMKGIGHFIGKTLKIDFKTQSGKMGHFARIYVEVDLTKKPRR 198
            A+W+R+PD  ME Y+   +  IG+ IGKTLK+D  T  G  G++ARI VEVDLTK    
Sbjct: 188 VAVWIRLPDLAMEYYDTAVLWKIGNHIGKTLKVDRTTSVGMRGNYARICVEVDLTKPLLS 247

Query: 199 DFTILXERYGIQYEGIHLVCFNCGVYGHKFEECPLRCNTETKANDNSSGILDSVGGDSRV 258
            F +      I YEG+H++CF CG YGHK + CP   N E + ++      +  G D  V
Sbjct: 248 KFKLRRRIRRISYEGLHMICFGCGQYGHKHDMCPFSMNKEDRNDEQQVSSNNGKGRDPTV 307

Query: 259 PKESNISEFSQKPFIPVPVSQPNRSPGHGPWML 289
           P E               V +P  +  +G WM+
Sbjct: 308 PAEDT-------------VVRPEVAENYGQWMV 327

BLAST of MS024016 vs. NCBI nr
Match: KAG6772677.1 (hypothetical protein POTOM_024095 [Populus tomentosa])

HSP 1 Score: 221.5 bits (563), Expect = 1.3e-53
Identity = 110/273 (40.29%), Postives = 155/273 (56.78%), Query Frame = 0

Query: 19  EDASSDEEGDSYPSND---VKFSKEQWKNFRALSRSALIIKVLGKSFGYPFLLRRLTAIW 78
           ED +SD++ +     D   ++ S E+ K  R   R  LIIKVLG+   Y FLL+RL  +W
Sbjct: 68  EDFASDDDEEDEEEEDCPVIRLSMEEKKRIREPWRQTLIIKVLGRRVSYTFLLKRLQIMW 127

Query: 79  KLKGHFKLINLSNEFFIARLDLKEDRDRVLMEGPWKILDHYLAVRSWSPKFRPSTVTIDR 138
           K++G   L++L N+FF+AR   KEDR+  +  GPW + DHYL +RSW P F P+  TI++
Sbjct: 128 KIQGDMNLVDLGNDFFLARFSNKEDREFAMSGGPWMVADHYLTMRSWHPNFDPNVATIEK 187

Query: 139 AALWVRIPDCPMELYNETGMKGIGHFIGKTLKIDFKTQSGKMGHFARIYVEVDLTKKPRR 198
            A+W+R+PD  ME Y+   +  IG+ IGKTLK+D  T  G  G++ARI VEVDLTK    
Sbjct: 188 VAVWIRLPDLAMEYYDTAVLWKIGNHIGKTLKVDRTTSVGMRGNYARICVEVDLTKPLLS 247

Query: 199 DFTILXERYGIQYEGIHLVCFNCGVYGHKFEECPLRCNTETKANDNSSGILDSVGGDSRV 258
            F +      I YEG+H++CF CG YGHK + CP   N E + ++      +  G D  V
Sbjct: 248 KFKLRRRIRRISYEGLHMICFGCGQYGHKHDMCPFSMNKEDRNDEQQVSSNNGKGRDPTV 307

Query: 259 PKESNISEFSQKPFIPVPVSQPNRSPGHGPWML 289
           P E               V +P  +  +G WM+
Sbjct: 308 PAEDT-------------VVRPEVAENYGQWMV 327

BLAST of MS024016 vs. NCBI nr
Match: KAG6752401.1 (hypothetical protein POTOM_044628 [Populus tomentosa])

HSP 1 Score: 221.5 bits (563), Expect = 1.3e-53
Identity = 110/273 (40.29%), Postives = 155/273 (56.78%), Query Frame = 0

Query: 19  EDASSDEEGDSYPSND---VKFSKEQWKNFRALSRSALIIKVLGKSFGYPFLLRRLTAIW 78
           ED +SD++ +     D   ++ S E+ K  R   R  LIIKVLG+   Y FLL+RL  +W
Sbjct: 68  EDFASDDDEEDEEEEDCPVIRLSMEEKKRIREPWRQTLIIKVLGRRVSYTFLLKRLQIMW 127

Query: 79  KLKGHFKLINLSNEFFIARLDLKEDRDRVLMEGPWKILDHYLAVRSWSPKFRPSTVTIDR 138
           K++G   L++L N+FF+AR   KEDR+  +  GPW + DHYL +RSW P F P+  TI++
Sbjct: 128 KIQGDMNLVDLGNDFFLARFSNKEDREFAMSGGPWMVADHYLTMRSWHPNFDPNVATIEK 187

Query: 139 AALWVRIPDCPMELYNETGMKGIGHFIGKTLKIDFKTQSGKMGHFARIYVEVDLTKKPRR 198
            A+W+R+PD  ME Y+   +  IG+ IGKTLK+D  T  G  G++ARI VEVDLTK    
Sbjct: 188 VAVWIRLPDLAMEYYDTAVLWKIGNHIGKTLKVDRTTSVGMRGNYARICVEVDLTKPLLS 247

Query: 199 DFTILXERYGIQYEGIHLVCFNCGVYGHKFEECPLRCNTETKANDNSSGILDSVGGDSRV 258
            F +      I YEG+H++CF CG YGHK + CP   N E + ++      +  G D  V
Sbjct: 248 KFKLRRRIRRISYEGLHMICFGCGQYGHKHDMCPFSMNKEDRNDEQQVSSNNGKGRDPTV 307

Query: 259 PKESNISEFSQKPFIPVPVSQPNRSPGHGPWML 289
           P E               V +P  +  +G WM+
Sbjct: 308 PAEDT-------------VVRPEVAENYGQWMV 327

BLAST of MS024016 vs. ExPASy TrEMBL
Match: A0A6J1DGZ9 (uncharacterized protein LOC111020790 OS=Momordica charantia OX=3673 GN=LOC111020790 PE=4 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 3.0e-88
Identity = 159/180 (88.33%), Postives = 165/180 (91.67%), Query Frame = 0

Query: 209 EGIHLVCFNCGVYGHKFEECPLRCNTETKANDNSSGILDSVGGDSRVPKESNISEFSQKP 268
           +GIHLVCFNCGVYGHK EECPLRCNTETK NDNSSGILDSVG DSRVPKESNI EF QKP
Sbjct: 6   KGIHLVCFNCGVYGHKLEECPLRCNTETKVNDNSSGILDSVGADSRVPKESNIPEFPQKP 65

Query: 269 FIPVPVSQPNRSPGHGPWMLVDHSKRNGGGKPPRTRSERGFVSSKNLNTKWNANLDPNEE 328
           FIPV VSQ N SPGHGPWMLVDHSKRNGGGKPPRTRS RGF+SSKNLNTKWN N DPNEE
Sbjct: 66  FIPVTVSQLNPSPGHGPWMLVDHSKRNGGGKPPRTRSGRGFISSKNLNTKWNLNSDPNEE 125

Query: 329 STNVLDPIVDPTVERDPIKSFQVKSVERVRLARDQDSWRFKNKIPFAGPGANFSGLPFNY 388
             NVLD IVDPT++RDPIKSFQ+KSVERVRLARDQDSWRFKNKIPFAGPGANFS LPF+Y
Sbjct: 126 PMNVLDTIVDPTMKRDPIKSFQIKSVERVRLARDQDSWRFKNKIPFAGPGANFSSLPFDY 185

BLAST of MS024016 vs. ExPASy TrEMBL
Match: A0A6N2LZK8 (CCHC-type domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS289963 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 7.6e-52
Identity = 118/321 (36.76%), Postives = 173/321 (53.89%), Query Frame = 0

Query: 2   VLGDTNEDFEMGVETLLEDASSDEEGDSYPSND---VKFSKEQWKNFRALSRSALIIKVL 61
           ++G+++   EM  + L  D  S++E D    +D   +K S E+ K  RA  +  LIIK++
Sbjct: 42  LMGESSVTHEMDEDNLPNDCISEDEDDDADEDDCPVIKISSEEKKRIRAPWKQTLIIKLM 101

Query: 62  GKSFGYPFLLRRLTAIWKLKGHFKLINLSNEFFIARLDLKEDRDRVLMEGPWKILDHYLA 121
           G+  GY F ++RL  +WKL+G F L +L NEF++A+    EDR+ VL  GPW + DHYL 
Sbjct: 102 GRKVGYMFFMQRLRNMWKLRGDFTLTDLGNEFYLAKFANPEDREHVLFGGPWMVTDHYLT 161

Query: 122 VRSWSPKFRPSTVTIDRAALWVRIPDCPMELYNETGMKGIGHFIGKTLKIDFKTQSGKMG 181
           +R+W P F P   TID+ A+WVR+P+  +E Y+   +  IG  IGKTLKID  T  G  G
Sbjct: 162 IRTWHPNFDPFEATIDKVAVWVRLPELALEYYDTAVLWKIGDKIGKTLKIDRTTSVGMRG 221

Query: 182 HFARIYVEVDLTKKPRRDFTILXERYGIQYEGIHLVCFNCGVYGHKFEECPLRCNTETKA 241
           +FAR+ VEVDLTK     F +      I YEG+H +CF+CG YGHK E CP         
Sbjct: 222 NFARLCVEVDLTKPLLAKFKLRRRVRRIMYEGLHSICFHCGQYGHKQELCP--------- 281

Query: 242 NDNSSGILDSVGGDSRVPKES--NISEFSQKPFIPVPVSQPNRSPGHGPWMLVDHSKRNG 301
                          ++P E+  + SE  +     VP+ +P      G WM+ +  +R  
Sbjct: 282 ---------------QIPHENKDHSSEKEKTEVQEVPIIRPEIMESFGSWMVAERRQRRP 338

Query: 302 GGK---PPRTRSERGFVSSKN 315
             +       R+ +G V++ N
Sbjct: 342 NKRTVMEENNRNGKGGVTAVN 338

BLAST of MS024016 vs. ExPASy TrEMBL
Match: A0A2N9GMU3 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS28533 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 3.3e-47
Identity = 119/353 (33.71%), Postives = 177/353 (50.14%), Query Frame = 0

Query: 22  SSDEEGDSYPSNDVKFS--KEQWKNFRALSRSALIIKVLGKSFGYPFLLRRLTAIWKLKG 81
           SSDEE D     +V  S  +E     RA   ++ I+KV G+S GY FL+ RL ++WK  G
Sbjct: 87  SSDEEDDPPEDGEVVISIPRETKLRIRAPWSTSFIVKVFGRSVGYLFLVNRLKSLWKPIG 146

Query: 82  HFKLINLSNEFFIARLDLKEDRDRVLMEGPWKILDHYLAVRSWSPKFRPSTVTIDRAALW 141
            F  ++L   FF+ +LDL +D DR+L  GPW I +H+L++R W P FRPS  +++   +W
Sbjct: 147 GFSCVDLGLGFFLVKLDLADDFDRILKGGPWFIGEHFLSLRPWVPDFRPSEASVNTVVVW 206

Query: 142 VRIPDCPMELYNETGMKGIGHFIGKTLKIDFKTQSGKMGHFARIYVEVDLTKKPRRDFTI 201
           VR+P+ P+E Y++  +  IGH +G  L++DF T SG  G FAR+ +++DL K   +   +
Sbjct: 207 VRLPELPVEYYDKESLLLIGHALGHVLRVDFNTASGTRGRFARLCIQLDLDKPLIKTVRV 266

Query: 202 LXERYGIQYEGIHLVCFNCGVYGHKFEECPLRCNTETKANDNSSGILDSVGGDSRVPKES 261
              R  + YEGI L+CF+CG  GHK ++CP R  T T     +    D+           
Sbjct: 267 GKVRQAVIYEGIGLLCFHCGRIGHKIDKCPERGGT-TSLTPTAPAQFDA----------- 326

Query: 262 NISEFSQKPFIPVPVSQPNRSPG--HGPWMLVDHSKRNGGGKP---PRTRSERGFVS--- 321
                      P P + P+R      GPWMLV   KR    KP    R+R E   V+   
Sbjct: 327 -----------PPPTNSPDRDAESIFGPWMLVSRCKRQNKPKPDNFARSREENSVVTLAP 386

Query: 322 --------SKNLNT------------KWNANLDPNEESTNVLDPIVDPTVERD 345
                     N +T            +W ++ +PN +   V++P+  P    D
Sbjct: 387 GRAAQTNKDGNASTSSPKKTKQAPQFRWKSSANPNPKGKAVVEPLRSPPTGPD 416

BLAST of MS024016 vs. ExPASy TrEMBL
Match: A0A1R3IXK3 (Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_09149 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 5.7e-47
Identity = 114/335 (34.03%), Postives = 174/335 (51.94%), Query Frame = 0

Query: 20  DASSDEEGDSYPSND-VKFSKEQWKNFRALSRSALIIKVLGKSFGYPFLLRRLTAIWKLK 79
           DA SD E      +D + FSKE+ +  R   R+ALI+K+LGK  G+  L  R+  +WKL+
Sbjct: 82  DADSDTETMGEGDDDCITFSKEEKEAMRKPWRNALIVKLLGKVLGFSALTSRINQLWKLE 141

Query: 80  GHFKLINLSNEFFIARLDLKEDRDRVLMEGPWKILDHYLAVRSWSPKFRPSTVTIDRAAL 139
           G +K+ +L +++FI R   K D + VL  GPW I  HYL VR W P F PS+  I++  +
Sbjct: 142 GDYKVTDLEHDYFIIRFQKKVDYEHVLEGGPWIIGGHYLTVRQWRPNFMPSSDKIEKLII 201

Query: 140 WVRIPDCPMELYNETGMKGIGHFIGKTLKIDFKTQSGKMGHFARIYVEVDLTKKPRRDFT 199
           W+R P+ P+E +N   +K +G  +G+ +KID  T  G  G FAR+ VE+DL+K  +   T
Sbjct: 202 WIRFPNIPVEYFNMIALKKMGGKVGRVIKIDQVTDEGTRGKFARVCVELDLSKPLKPRLT 261

Query: 200 ILXERYGIQYEGIHLVCFNCGVYGHKFEECPLRCNTETKANDNSSGILDSVGGDSRVPKE 259
           +      I+YEG+ L+CF+CG++GH+  +CPL+  + ++                  P+ 
Sbjct: 262 VEGRDVLIEYEGLSLICFDCGIFGHRKSDCPLQKPSSSEKEGE--------------PQP 321

Query: 260 SNISEFSQKPFIPVPVSQPNRSPGHGPWMLVDHSKRN-----------GGGKPPRTRSER 319
           S + E  ++P          +   +GPWM+V   KRN            GGK        
Sbjct: 322 SMVPETQEEP----------KDQTYGPWMMVQRRKRNPGKPGAAQGVIHGGKSVIRDFRN 381

Query: 320 GF-----VSSKNLNTKWNANLDPNEESTNVLDPIV 338
           GF     V++ NLN K +AN     E      P++
Sbjct: 382 GFDYHKGVTADNLNVKKSANFKGVMEKNKGDAPVI 392

BLAST of MS024016 vs. ExPASy TrEMBL
Match: A0A2N9HXU9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS44383 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.4e-45
Identity = 104/280 (37.14%), Postives = 149/280 (53.21%), Query Frame = 0

Query: 19  EDASSDEEGDSYPSND----VKFSKEQWKNFRALSRSALIIKVLGKSFGYPFLLRRLTAI 78
           E  SSDEE D  P  +    +KF++E     RA   ++LI+KV G+S GY FL+ +L  +
Sbjct: 82  EIISSDEENDEEPPEEGEVVIKFTRELKHRIRAPWSTSLIVKVFGRSVGYVFLVNKLKTM 141

Query: 79  WKLKGHFKLINLSNEFFIARLDLKEDRDRVLMEGPWKILDHYLAVRSWSPKFRPSTVTID 138
           W   G+F  ++L   FF+ R D +   + VL  GPW I +H+L++R W P FR S  ++ 
Sbjct: 142 WNFAGNFSCVDLGLGFFLIRFDSQSGFEEVLKRGPWFIGEHFLSLRPWVPNFRASEASVK 201

Query: 139 RAALWVRIPDCPMELYNETGMKGIGHFIGKTLKIDFKTQSGKMGHFARIYVEVDLTKKPR 198
             A+WVR+P+ P+E Y++  +  IG  +G  L++DF T +G  G FARI V++DL K   
Sbjct: 202 TVAIWVRLPELPVEYYHKDSLLHIGSGLGPVLRVDFNTAAGTRGRFARICVQIDLDKPLA 261

Query: 199 RDFTILXERYGIQYEGIHLVCFNCGVYGHKFEECPLRCNTETKANDNSSGILDSVGGDSR 258
           R   +   R  + YEGI L+CF+CG  GH+ E CP R     +  DN + I      DSR
Sbjct: 262 RTVRVGKTRLAVIYEGIGLLCFHCGRIGHRSELCPSRI---LEKEDNPTDI-----ADSR 321

Query: 259 VPKESNISEFSQKPFIPVPVSQPNRSPGHGPWMLVDHSKR 295
             +E  +  F                   GPWMLV   KR
Sbjct: 322 AEEEEKLKNF-------------------GPWMLVSRRKR 334

BLAST of MS024016 vs. TAIR 10
Match: AT2G01050.1 (zinc ion binding;nucleic acid binding )

HSP 1 Score: 142.5 bits (358), Expect = 7.1e-34
Identity = 65/195 (33.33%), Postives = 105/195 (53.85%), Query Frame = 0

Query: 35  VKFSKEQWKNFRALSRSALIIKVLGKSFGYPFLLRRLTAIWKLKGHFKLINLSNEFFIAR 94
           +   +E  +    L +  +I+KVLG       L R+L  +WK  G   +++L  +FF+ R
Sbjct: 63  ITIGEEVLEAMNGLWKKCMIVKVLGSQIPISVLNRKLRELWKPSGVMTVMDLPRQFFMIR 122

Query: 95  LDLKEDRDRVLMEGPWKILDHYLAVRSWSPKFRPSTVTIDRAALWVRIPDCPMELYNETG 154
            +L+E+    L  GPW++L +YL V+ WS +F P    I    +WVR+ + P   Y+   
Sbjct: 123 FELEEEYMAALTGGPWRVLGNYLLVQDWSSRFDPLRDDIVTTPVWVRLSNIPYNYYHRCL 182

Query: 155 MKGIGHFIGKTLKIDFKTQSGKMGHFARIYVEVDLTKKPRRDFTILXERYGIQYEGIHLV 214
           +  I   +G+ LK+D  T +   G FAR+ +EV+L K  +    I  +RY + YEG+  +
Sbjct: 183 LMEIARGLGRPLKVDMNTINFDKGRFARVCIEVNLAKPLKGTVLINGDRYFVAYEGLSKI 242

Query: 215 CFNCGVYGHKFEECP 230
           C +CG+YGH    CP
Sbjct: 243 CSSCGIYGHLVHSCP 257

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022153253.16.1e-8888.33uncharacterized protein LOC111020790 [Momordica charantia][more]
XP_034894450.11.3e-5340.29uncharacterized protein LOC118033543 isoform X2 [Populus alba][more]
XP_034894449.11.3e-5340.29uncharacterized protein LOC118033543 isoform X1 [Populus alba][more]
KAG6772677.11.3e-5340.29hypothetical protein POTOM_024095 [Populus tomentosa][more]
KAG6752401.11.3e-5340.29hypothetical protein POTOM_044628 [Populus tomentosa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DGZ93.0e-8888.33uncharacterized protein LOC111020790 OS=Momordica charantia OX=3673 GN=LOC111020... [more]
A0A6N2LZK87.6e-5236.76CCHC-type domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS289... [more]
A0A2N9GMU33.3e-4733.71Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS28533 PE=4 SV=1[more]
A0A1R3IXK35.7e-4734.03Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_09149 PE=4 SV... [more]
A0A2N9HXU91.4e-4537.14Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS44383 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G01050.17.1e-3433.33zinc ion binding;nucleic acid binding [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025558Domain of unknown function DUF4283PFAMPF14111DUF4283coord: 49..185
e-value: 1.1E-29
score: 102.8
IPR040256Uncharacterized protein At4g02000-likePANTHERPTHR31286GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKEcoord: 50..329
NoneNo IPR availablePANTHERPTHR31286:SF37SUBFAMILY NOT NAMEDcoord: 50..329
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 214..228
score: 9.273614

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS024016.1MS024016.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding