MS024015 (gene) Bitter gourd (TR) v1

Overview
NameMS024015
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTy3/gypsy retrotransposon protein
Locationscaffold64: 464745 .. 465222 (-)
RNA-Seq ExpressionMS024015
SyntenyMS024015
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGACGTTGGAGTCCACCCTCACTCGTACGGTCACATTGGCTAGCAAAGCAGGAACAACGACGCCTATAGACACAGCACCGACAGCCAAGAAAGAAGCCACTTATAAGCGCTTGATAGTGGATGAGTATCGGAAGCAGAAGGAGAAGAGCCTTTCTTTTAAATGTGAGGAAAAATACACTGTTGACCATCGGTGTAAGAATGAATAGTTGCGAGAGATTGTAGTTCACGATGAGGACGATAGATGAGGAAGAATAAGACTTGATAGAAGGAGATTGCACCGATGAAGAAAGGAAGGCAGTGATGTGCCGATTGAACACTAGCATGAGCAAAACTACACCAGGAATGATCAAGATCAGGGGAACACTGCAAGGACGTGATGTCATAGTTCTTTTAGACTGCAGAGCCACTAACAAGTTCATCTCCCAGAATGGAGACGGATTGGACAGCTTTGTCAATGACTTTTTTGAAGGGTGA

mRNA sequence

ATGAAGACGTTGGAGTCCACCCTCACTCGTACGGTCACATTGGCTAGCAAAGCAGGAACAACGACGCCTATAGACACAGCACCGACAGCCAAGAAAGAAGCCACTTATAAGCGCTTGATAGTGGATGAGTATCGGAAGCAGAAGGAGAAGAGCCTTTCTTTTAAATGTGAGGAAAAATACACTGTTGACCATCGGTATTGCACCGATGAAGAAAGGAAGGCAGTGATGTGCCGATTGAACACTAGCATGAGCAAAACTACACCAGGAATGATCAAGATCAGGGGAACACTGCAAGGACGTGATGTCATAGTTCTTTTAGACTGCAGAGCCACTAACAAGTTCATCTCCCAGAATGGAGACGGATTGGACAGCTTTGTCAATGACTTTTTTGAAGGGTGA

Coding sequence (CDS)

ATGAAGACGTTGGAGTCCACCCTCACTCGTACGGTCACATTGGCTAGCAAAGCAGGAACAACGACGCCTATAGACACAGCACCGACAGCCAAGAAAGAAGCCACTTATAAGCGCTTGATAGTGGATGAGTATCGGAAGCAGAAGGAGAAGAGCCTTTCTTTTAAATGTGAGGAAAAATACACTGTTGACCATCGGTATTGCACCGATGAAGAAAGGAAGGCAGTGATGTGCCGATTGAACACTAGCATGAGCAAAACTACACCAGGAATGATCAAGATCAGGGGAACACTGCAAGGACGTGATGTCATAGTTCTTTTAGACTGCAGAGCCACTAACAAGTTCATCTCCCAGAATGGAGACGGATTGGACAGCTTTGTCAATGACTTTTTTGAAGGGTGA

Protein sequence

MKTLESTLTRTVTLASKAGTTTPIDTAPTAKKEATYKRLIVDEYRKQKEKSLSFKCEEKYTVDHRYCTDEERKAVMCRLNTSMSKTTPGMIKIRGTLQGRDVIVLLDCRATNKFISQNGDGLDSFVNDFFEG
Homology
[Close]
BLAST of MS024015 vs. NCBI nr
Match: XP_022131713.1 (uncharacterized protein LOC111004816 [Momordica charantia])

HSP 1 Score: 97.4 bits (241), Expect = 9.5e-17
Identity = 67/145 (46.21%), Postives = 82/145 (56.55%), Query Frame = 0 

Query: 1   MKTLESTLTRTVTLASKAGT-TTPIDTAPTAKKEATYKRLIVDEYRKQKEKSLSFKCEEK 60
           +KT E+T TR+VTLASK GT  T     PT KKE  YKRL  +EYRK+ E  L F+CE+K
Sbjct: 95  IKTPETTATRSVTLASKPGTAVTAPAVVPTVKKETAYKRLTEEEYRKRWENGLCFRCEKK 154

Query: 61  YTVDHR----------------------------YCTDEERKAVMCRLNTSMSKTTPGMI 117
           Y+V HR                               DE+ KAV+  LNT +  TT GMI
Sbjct: 155 YSVGHRCRNQQLRVFMVHDEELTMTEEEEDHEEGETLDEKGKAVV--LNTVVGLTTLGMI 214

[Close]
BLAST of MS024015 vs. NCBI nr
Match: XP_022154744.1 (uncharacterized protein LOC111021922 [Momordica charantia])

HSP 1 Score: 78.2 bits (191), Expect = 6.0e-11
Identity = 51/147 (34.69%), Postives = 78/147 (53.06%), Query Frame = 0 

Query: 2   KTLESTLTRTVTLASKAGTTTPIDTAPTAKKEATYKRLIVDEYRKQKEKSLSFKCEEKYT 61
           KT E+  TRTVTL+ K+       TA   +KE T K+L   EY+++K+K L F+ EEKY+
Sbjct: 254 KTSETVTTRTVTLSGKS-----YPTAQPLRKEQTQKKLTETEYQRRKDKGLCFRSEEKYS 313

Query: 62  VDHRYCTDEERKAVMCR-------------------------------LNTSMSKTTPGM 118
           + HR C ++E K  +                                 LNT +  +TPG 
Sbjct: 314 IGHR-CKNQELKVFVVHDDEGMELDQEELIMSTEGRETTIVEEVAELALNTVVGFSTPGT 373

[Close]
BLAST of MS024015 vs. NCBI nr
Match: TYK09441.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 70.5 bits (171), Expect = 1.2e-08
Identity = 47/144 (32.64%), Postives = 68/144 (47.22%), Query Frame = 0 

Query: 10  RTVTLASKAGTTTPIDTAPTAKKEATYKRLIVDEYRKQKEKSLSFKCEEKYTVDHRYCTD 69
           RT+TL S+A T          ++E TYKRL   E++ QKEK L F+C EKY+ DH+    
Sbjct: 322 RTITLRSQAATEN--------RREGTYKRLPDAEFQAQKEKGLCFRCNEKYSADHKCRLK 381

Query: 70  EERK------------------------------------AVMCRLNTSMSKTTPGMIKI 118
           E+R+                                     V   +N+ +    PG +K+
Sbjct: 382 EQRELRMFVVTEGKGEYEIVEEEKEEKDLGRLEVNEDLTTVVELSINSVVGLNDPGTMKV 441

[Close]
BLAST of MS024015 vs. NCBI nr
Match: KAA0046073.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 70.5 bits (171), Expect = 1.2e-08
Identity = 47/144 (32.64%), Postives = 68/144 (47.22%), Query Frame = 0 

Query: 10  RTVTLASKAGTTTPIDTAPTAKKEATYKRLIVDEYRKQKEKSLSFKCEEKYTVDHRYCTD 69
           RT+TL S+A T          ++E TYKRL   E++ QKEK L F+C EKY+ DH+    
Sbjct: 322 RTITLRSQAATEN--------RREGTYKRLPDAEFQAQKEKGLCFRCNEKYSADHKCRLK 381

Query: 70  EERK------------------------------------AVMCRLNTSMSKTTPGMIKI 118
           E+R+                                     V   +N+ +    PG +K+
Sbjct: 382 EQRELRMFVVTEGKGEYEIVEEEKEEKDLGRLEVNEDLTTVVELSINSVVGLNDPGTMKV 441

[Close]
BLAST of MS024015 vs. NCBI nr
Match: KAA0063978.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 2.8e-08
Identity = 47/145 (32.41%), Postives = 68/145 (46.90%), Query Frame = 0 

Query: 9   TRTVTLASKAGTTTPIDTAPTAKKEATYKRLIVDEYRKQKEKSLSFKCEEKYTVDHRYCT 68
           TRT+TL S+A            ++E TYKRL   E++ +KEK L F+C EKY+ DHR   
Sbjct: 321 TRTITLRSQASNEN--------RREGTYKRLPDAEFQTRKEKGLCFRCNEKYSADHRCRL 380

Query: 69  DEERK------------------------------------AVMCRLNTSMSKTTPGMIK 118
            E+R+                                     V   +N+ +    PG +K
Sbjct: 381 KEQRELRMFVVTEGKDEYEIVEEEKEEKDFGRLEVNEDLTTVVELSINSVVGLNDPGTMK 440

[Close]
BLAST of MS024015 vs. ExPASy TrEMBL
Match: A0A6J1BU87 (uncharacterized protein LOC111004816 OS=Momordica charantia OX=3673 GN=LOC111004816 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 4.6e-17
Identity = 67/145 (46.21%), Postives = 82/145 (56.55%), Query Frame = 0 

Query: 1   MKTLESTLTRTVTLASKAGT-TTPIDTAPTAKKEATYKRLIVDEYRKQKEKSLSFKCEEK 60
           +KT E+T TR+VTLASK GT  T     PT KKE  YKRL  +EYRK+ E  L F+CE+K
Sbjct: 95  IKTPETTATRSVTLASKPGTAVTAPAVVPTVKKETAYKRLTEEEYRKRWENGLCFRCEKK 154

Query: 61  YTVDHR----------------------------YCTDEERKAVMCRLNTSMSKTTPGMI 117
           Y+V HR                               DE+ KAV+  LNT +  TT GMI
Sbjct: 155 YSVGHRCRNQQLRVFMVHDEELTMTEEEEDHEEGETLDEKGKAVV--LNTVVGLTTLGMI 214

[Close]
BLAST of MS024015 vs. ExPASy TrEMBL
Match: A0A6J1DN22 (Reverse transcriptase OS=Momordica charantia OX=3673 GN=LOC111021922 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.9e-11
Identity = 51/147 (34.69%), Postives = 78/147 (53.06%), Query Frame = 0 

Query: 2   KTLESTLTRTVTLASKAGTTTPIDTAPTAKKEATYKRLIVDEYRKQKEKSLSFKCEEKYT 61
           KT E+  TRTVTL+ K+       TA   +KE T K+L   EY+++K+K L F+ EEKY+
Sbjct: 254 KTSETVTTRTVTLSGKS-----YPTAQPLRKEQTQKKLTETEYQRRKDKGLCFRSEEKYS 313

Query: 62  VDHRYCTDEERKAVMCR-------------------------------LNTSMSKTTPGM 118
           + HR C ++E K  +                                 LNT +  +TPG 
Sbjct: 314 IGHR-CKNQELKVFVVHDDEGMELDQEELIMSTEGRETTIVEEVAELALNTVVGFSTPGT 373

[Close]
BLAST of MS024015 vs. ExPASy TrEMBL
Match: A0A5A7TR82 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1096G00290 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 6.0e-09
Identity = 47/144 (32.64%), Postives = 68/144 (47.22%), Query Frame = 0 

Query: 10  RTVTLASKAGTTTPIDTAPTAKKEATYKRLIVDEYRKQKEKSLSFKCEEKYTVDHRYCTD 69
           RT+TL S+A T          ++E TYKRL   E++ QKEK L F+C EKY+ DH+    
Sbjct: 322 RTITLRSQAATEN--------RREGTYKRLPDAEFQAQKEKGLCFRCNEKYSADHKCRLK 381

Query: 70  EERK------------------------------------AVMCRLNTSMSKTTPGMIKI 118
           E+R+                                     V   +N+ +    PG +K+
Sbjct: 382 EQRELRMFVVTEGKGEYEIVEEEKEEKDLGRLEVNEDLTTVVELSINSVVGLNDPGTMKV 441

[Close]
BLAST of MS024015 vs. ExPASy TrEMBL
Match: A0A5D3CC95 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold499G00290 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 6.0e-09
Identity = 47/144 (32.64%), Postives = 68/144 (47.22%), Query Frame = 0 

Query: 10  RTVTLASKAGTTTPIDTAPTAKKEATYKRLIVDEYRKQKEKSLSFKCEEKYTVDHRYCTD 69
           RT+TL S+A T          ++E TYKRL   E++ QKEK L F+C EKY+ DH+    
Sbjct: 322 RTITLRSQAATEN--------RREGTYKRLPDAEFQAQKEKGLCFRCNEKYSADHKCRLK 381

Query: 70  EERK------------------------------------AVMCRLNTSMSKTTPGMIKI 118
           E+R+                                     V   +N+ +    PG +K+
Sbjct: 382 EQRELRMFVVTEGKGEYEIVEEEKEEKDLGRLEVNEDLTTVVELSINSVVGLNDPGTMKV 441

[Close]
BLAST of MS024015 vs. ExPASy TrEMBL
Match: A0A5D3BZJ8 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1415G00230 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.3e-08
Identity = 47/145 (32.41%), Postives = 68/145 (46.90%), Query Frame = 0 

Query: 9   TRTVTLASKAGTTTPIDTAPTAKKEATYKRLIVDEYRKQKEKSLSFKCEEKYTVDHRYCT 68
           TRT+TL S+A            ++E TYKRL   E++ +KEK L F+C EKY+ DHR   
Sbjct: 321 TRTITLRSQASNEN--------RREGTYKRLPDAEFQTRKEKGLCFRCNEKYSADHRCRL 380

Query: 69  DEERK------------------------------------AVMCRLNTSMSKTTPGMIK 118
            E+R+                                     V   +N+ +    PG +K
Sbjct: 381 KEQRELRMFVVTEGKDEYEIVEEEKEEKDFGRLEVNEDLTTVVELSINSVVGLNDPGTMK 440

The following BLAST results are available for this feature:
BLAST of MS024015 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022131713.19.5e-1746.21uncharacterized protein LOC111004816 [Momordica charantia][more]
XP_022154744.16.0e-1134.69uncharacterized protein LOC111021922 [Momordica charantia][more]
TYK09441.11.2e-0832.64Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0046073.11.2e-0832.64Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa][more]
KAA0063978.12.8e-0832.41Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of MS024015 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS024015 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1BU874.6e-1746.21uncharacterized protein LOC111004816 OS=Momordica charantia OX=3673 GN=LOC111004... [more]
A0A6J1DN222.9e-1134.69Reverse transcriptase OS=Momordica charantia OX=3673 GN=LOC111021922 PE=4 SV=1[more]
A0A5A7TR826.0e-0932.64Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3CC956.0e-0932.64Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3BZJ81.3e-0832.41Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
BLAST of MS024015 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS024015.1MS024015.1mRNA