MS024006 (gene) Bitter gourd (TR) v1

Overview
NameMS024006
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold44: 2160672 .. 2161322 (-)
RNA-Seq ExpressionMS024006
SyntenyMS024006
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCAAAACCTCTACCTTTCTTCTACCTATCCTCCTCCTCCTCCTCTTCCTCTCTTCCTTCTCTTCAGGTGAGAAAATTTTTGTTCAATACCCCATAGCTTAGCACAAATATAACCAACCTCCTCTCTTTCCATCTTTCCATTACAGTTGCAGAAGAGTTTGGGGATTTCAACACTCAGATGAGTCTTCATCACTCTCCTCACAAGGTACTGTAAAGCATAGCAGATCTGTGGAGAAATTATTGAATATTTACTTTTTCGTGTTTGAAAGCTATTTACTTTTCTCTTCAACAACTGCCCTGCTACGAGAGATCCAAAGATTATATAAGTATCAAACATGATGTTTTCAACATCGCAATATTCCTAATTCGTAATCTAGAATTTTGATGGGTTTCACATATTTTCAGAAATCTGATATGGAGAACGAAGAATTCTTCCCTGCGAGTAATTTTCACTAAGAGGCAAATTTTAACCTCTGGAAGTTCTACTTACTTTGTCTAGGTTATCTAACAGAAATCTTTTCTTTCATGAAGGATGGATTCCAATCAGTGACTAAGAAGTTTTTGATGATTGAGAGACTAGATTACGAGGATCCTGTACCTAACCGTAAGCACGAGCCTCCGAAACCTGGCACCGGGAAGCCATAG

mRNA sequence

ATGGCTTCCAAAACCTCTACCTTTCTTCTACCTATCCTCCTCCTCCTCCTCTTCCTCTCTTCCTTCTCTTCAGTTGCAGAAGAGTTTGGGGATTTCAACACTCAGATGAGTCTTCATCACTCTCCTCACAAGGATGGATTCCAATCAGTGACTAAGAAGTTTTTGATGATTGAGAGACTAGATTACGAGGATCCTGTACCTAACCGTAAGCACGAGCCTCCGAAACCTGGCACCGGGAAGCCATAG

Coding sequence (CDS)

ATGGCTTCCAAAACCTCTACCTTTCTTCTACCTATCCTCCTCCTCCTCCTCTTCCTCTCTTCCTTCTCTTCAGTTGCAGAAGAGTTTGGGGATTTCAACACTCAGATGAGTCTTCATCACTCTCCTCACAAGGATGGATTCCAATCAGTGACTAAGAAGTTTTTGATGATTGAGAGACTAGATTACGAGGATCCTGTACCTAACCGTAAGCACGAGCCTCCGAAACCTGGCACCGGGAAGCCATAG

Protein sequence

MASKTSTFLLPILLLLLFLSSFSSVAEEFGDFNTQMSLHHSPHKDGFQSVTKKFLMIERLDYEDPVPNRKHEPPKPGTGKP
Homology
[Close]
BLAST of MS024006 vs. NCBI nr
Match: KAG7013312.1 (hypothetical protein SDJN02_26071, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 62.8 bits (151), Expect = 1.6e-06
Identity = 32/63 (50.79%), Postives = 43/63 (68.25%), Query Frame = 0 

Query: 23 SSVAEEFGDFNTQMSLHHSPHK-----DGFQSVTKKFLMIERLDYEDPVPNRKHEPPKPG 81
          +++  EFG  NT+M+L+HSP+K     DGFQ   +K L++ R DY+DPV N  HEP KP 
Sbjct: 3  AAIGGEFGASNTKMNLNHSPNKVYRKVDGFQMEMRKLLIVYRPDYDDPVDN--HEPQKPA 62

[Close]
BLAST of MS024006 vs. NCBI nr
Match: KAA8533583.1 (hypothetical protein F0562_030983 [Nyssa sinensis])

HSP 1 Score: 53.9 bits (128), Expect = 7.4e-04
Identity = 39/82 (47.56%), Postives = 51/82 (62.20%), Query Frame = 0 

Query: 1  MASKTSTFLLPILLLLLFLSSFSSVAEEFGDFNTQMSLHHSPHKDGFQSVTKKFLMIER- 60
          MA K  T LL +LLL +FLS  S +AE F D    M+  +S HKDGF   ++K L+++R 
Sbjct: 1  MALKIKTSLLVLLLLHIFLS--SGIAEGFSD---SMNHIYSVHKDGFPMNSRKLLVLDRM 60

Query: 61 LDYEDPVPNRKHEPPKPGTGKP 82
          LDY+   PN KH+ P P  GKP
Sbjct: 61 LDYDYAGPNPKHD-PSPRKGKP 76

[Close]
BLAST of MS024006 vs. ExPASy TrEMBL
Match: A0A5J5ARF7 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_030983 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.6e-04
Identity = 39/82 (47.56%), Postives = 51/82 (62.20%), Query Frame = 0 

Query: 1  MASKTSTFLLPILLLLLFLSSFSSVAEEFGDFNTQMSLHHSPHKDGFQSVTKKFLMIER- 60
          MA K  T LL +LLL +FLS  S +AE F D    M+  +S HKDGF   ++K L+++R 
Sbjct: 1  MALKIKTSLLVLLLLHIFLS--SGIAEGFSD---SMNHIYSVHKDGFPMNSRKLLVLDRM 60

Query: 61 LDYEDPVPNRKHEPPKPGTGKP 82
          LDY+   PN KH+ P P  GKP
Sbjct: 61 LDYDYAGPNPKHD-PSPRKGKP 76

The following BLAST results are available for this feature:
BLAST of MS024006 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7013312.11.6e-0650.79hypothetical protein SDJN02_26071, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAA8533583.17.4e-0447.56hypothetical protein F0562_030983 [Nyssa sinensis][more]
BLAST of MS024006 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS024006 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5J5ARF73.6e-0447.56Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_030983 PE=4 SV=1[more]
BLAST of MS024006 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS024006.1MS024006.1mRNA