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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGGCTTCCAAAACCTCTACCTTTCTTCTACCTATCCTCCTCCTCCTCCTCTTCCTCTCTTCCTTCTCTTCAGGTGAGAAAATTTTTGTTCAATACCCCATAGCTTAGCACAAATATAACCAACCTCCTCTCTTTCCATCTTTCCATTACAGTTGCAGAAGAGTTTGGGGATTTCAACACTCAGATGAGTCTTCATCACTCTCCTCACAAGGTACTGTAAAGCATAGCAGATCTGTGGAGAAATTATTGAATATTTACTTTTTCGTGTTTGAAAGCTATTTACTTTTCTCTTCAACAACTGCCCTGCTACGAGAGATCCAAAGATTATATAAGTATCAAACATGATGTTTTCAACATCGCAATATTCCTAATTCGTAATCTAGAATTTTGATGGGTTTCACATATTTTCAGAAATCTGATATGGAGAACGAAGAATTCTTCCCTGCGAGTAATTTTCACTAAGAGGCAAATTTTAACCTCTGGAAGTTCTACTTACTTTGTCTAGGTTATCTAACAGAAATCTTTTCTTTCATGAAGGATGGATTCCAATCAGTGACTAAGAAGTTTTTGATGATTGAGAGACTAGATTACGAGGATCCTGTACCTAACCGTAAGCACGAGCCTCCGAAACCTGGCACCGGGAAGCCATAG mRNA sequence ATGGCTTCCAAAACCTCTACCTTTCTTCTACCTATCCTCCTCCTCCTCCTCTTCCTCTCTTCCTTCTCTTCAGTTGCAGAAGAGTTTGGGGATTTCAACACTCAGATGAGTCTTCATCACTCTCCTCACAAGGATGGATTCCAATCAGTGACTAAGAAGTTTTTGATGATTGAGAGACTAGATTACGAGGATCCTGTACCTAACCGTAAGCACGAGCCTCCGAAACCTGGCACCGGGAAGCCATAG Coding sequence (CDS) ATGGCTTCCAAAACCTCTACCTTTCTTCTACCTATCCTCCTCCTCCTCCTCTTCCTCTCTTCCTTCTCTTCAGTTGCAGAAGAGTTTGGGGATTTCAACACTCAGATGAGTCTTCATCACTCTCCTCACAAGGATGGATTCCAATCAGTGACTAAGAAGTTTTTGATGATTGAGAGACTAGATTACGAGGATCCTGTACCTAACCGTAAGCACGAGCCTCCGAAACCTGGCACCGGGAAGCCATAG Protein sequence MASKTSTFLLPILLLLLFLSSFSSVAEEFGDFNTQMSLHHSPHKDGFQSVTKKFLMIERLDYEDPVPNRKHEPPKPGTGKP
Homology
BLAST of MS024006 vs. NCBI nr
Match: KAG7013312.1 (hypothetical protein SDJN02_26071, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 62.8 bits (151), Expect = 1.6e-06 Identity = 32/63 (50.79%), Postives = 43/63 (68.25%), Query Frame = 0
Query: 23 SSVAEEFGDFNTQMSLHHSPHK-----DGFQSVTKKFLMIERLDYEDPVPNRKHEPPKPG 81
+++ EFG NT+M+L+HSP+K DGFQ +K L++ R DY+DPV N HEP KP
Sbjct: 3 AAIGGEFGASNTKMNLNHSPNKVYRKVDGFQMEMRKLLIVYRPDYDDPVDN--HEPQKPA 62
BLAST of MS024006 vs. NCBI nr
Match: KAA8533583.1 (hypothetical protein F0562_030983 [Nyssa sinensis]) HSP 1 Score: 53.9 bits (128), Expect = 7.4e-04 Identity = 39/82 (47.56%), Postives = 51/82 (62.20%), Query Frame = 0
Query: 1 MASKTSTFLLPILLLLLFLSSFSSVAEEFGDFNTQMSLHHSPHKDGFQSVTKKFLMIER- 60
MA K T LL +LLL +FLS S +AE F D M+ +S HKDGF ++K L+++R
Sbjct: 1 MALKIKTSLLVLLLLHIFLS--SGIAEGFSD---SMNHIYSVHKDGFPMNSRKLLVLDRM 60
Query: 61 LDYEDPVPNRKHEPPKPGTGKP 82
LDY+ PN KH+ P P GKP
Sbjct: 61 LDYDYAGPNPKHD-PSPRKGKP 76
BLAST of MS024006 vs. ExPASy TrEMBL
Match: A0A5J5ARF7 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_030983 PE=4 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 3.6e-04 Identity = 39/82 (47.56%), Postives = 51/82 (62.20%), Query Frame = 0
Query: 1 MASKTSTFLLPILLLLLFLSSFSSVAEEFGDFNTQMSLHHSPHKDGFQSVTKKFLMIER- 60
MA K T LL +LLL +FLS S +AE F D M+ +S HKDGF ++K L+++R
Sbjct: 1 MALKIKTSLLVLLLLHIFLS--SGIAEGFSD---SMNHIYSVHKDGFPMNSRKLLVLDRM 60
Query: 61 LDYEDPVPNRKHEPPKPGTGKP 82
LDY+ PN KH+ P P GKP
Sbjct: 61 LDYDYAGPNPKHD-PSPRKGKP 76
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAG7013312.1 | 1.6e-06 | 50.79 | hypothetical protein SDJN02_26071, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
| KAA8533583.1 | 7.4e-04 | 47.56 | hypothetical protein F0562_030983 [Nyssa sinensis] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5J5ARF7 | 3.6e-04 | 47.56 | Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_030983 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
The following mRNA feature(s) are a part of this gene:
| Feature Name | Unique Name | Type |
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| MS024006.1 | MS024006.1 | mRNA |
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