MS023971 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGAGGAAGGCTGTGGCGGTCTGCTCTGTGGTTGCTTTTTTGGGGCTTTTGGTGGTCGCCACTGGATTCGCCGCTGAGGGCACGCGGATCAAGGTGAAGATGCTTCTTCTTTACTTAGATTTATGTTCGTTTTTCTGAGATTGATTGTCTGATATTTCTTCGGTTGATTTTCTGTTTGGTTGATGAGAAAATTTGTGTAAAAGAAAGTGAAGGAAAAGGTTGCTGAAAGTTGTGCTTATGAACAGAGATTTTTATGGTGTAATTTGAAGTTCTGATTGAAAAAAGTTGTTGGTGAATTAAAAACACAGATTTATGGCTTTGTTTTTTTTGGCCGCTTCTTTTTATCTTTACTTGTTTCCCAAGCTCTACTCTGAATCGATCTTCTTCTTCCTTTTTAATTTTTTTTTTTCTCATTTATATCAGAAAACAAATGAGAATACTGATTTGACTGATGTATTGGGGGAAATTATGTCAAATTTTGTTCTAATGTTTTTTTTTAATTAATTTATTTAATTAGCAATAATTGAGAATGCTGATTTGGATCAAATAAAGCAAATTATTTTTGCTTTTGTCTTTTTGTTTTTTCCTGCAAGTGATCCAAACTTCCAATTACATGCAAGTGATCCAAACTTCCAATTACATGCAAGTGATCCAAGTAATAACTAGAGTCGGTTTGATAATGATTTTGTTTTTTATTTTTTATTTTAAATAATTAAACAAATTTACTGATAATTTTGGTTAAAATATAGTCTTTGTTCTCTTAAACTTTCCTCATTTTAAATATGGTCCCTACAACTAAAAGAAAAGAAAAAGTTCGTTTAATCCCACACATTTTATTAAGTTACCAATTCTGTTCATGTCATTAAGAGAATTAAGCCTAACTGGTCTTATGATTATGAATCCCAACCTTTTTTTTTTAATCTTATCATTAGATGAGAACCTTGCAGTTTAGACTTAGTTTCTAATCTAATGATCTTAATCATCATTGGCTTTTTTCTTCTTTCCTTGATCTATGTTGATGTTGATTTCAAATTCTTCTGGATGAGAGACTCTGTTTCTAGGTGGTGTCCTTTAGTTGGGCTGTTTTTTTTTATGCCTCATATATTTTGTTCATTTCTCTAAATGAAATAGCGGTTTCTCATTAGAAAAAACATTTCTTTCGAATGCTACGATCCCACGGATAAAGTTTGATAAGTTGGCTTTTCATTTGGCAGCTTAGTCAAGTTATTCAAGTCACTCCTAATACGTGCACATATCCCCGAAGTCCAGCGTTGGGGCTTGGTTTGGCAGCAGCTCTATCACTTTTGGTTGCTCAGTTAACGATAAATGTTTCGACGGGTTGCATTTGTTGCATACGGGGGCCTCGGCCTCCCGCTTCTAAATGGAGAACAACCGTGGTCTGCTTTGTCATTTCCTGGTAATTTTCGGCCCTTTTCTCCTCATCAGAGTTTGCATTTAGTTGATGGTTTGATGCTTTCTATTACATCATGAGAGATATTATATGAATTTGGAGGAACCTTACTCTTGGTCGAATTGAAGGTTGCATTACTGTCAAATACTATCTGCTCTTGTATTGGGGTTGACTTAATTAGTTATTCGAATTCTCGTCAGGTTCTCTATGGTCTGAATTTCTGTTGTGACATTGTTCGTTATTACATAACCTTCTTTATGTTAGCTTTTAGACGGTTCCACTGTTTTTGTTCTCTGCATTGTTAAAATTATGAAAGTTATGACCGTTAGGTTTATCGAAAATCTTGGCCTGGAGAAGAGACTTCCCTAACCTTAATCATCACAGAGGAAAGGATTGAACCATTGTTCTTGGCAAAATCTTTTGATTGATTTAATCCAACAACTAAAAGAAAGATCGATACCTTAAGTTCCTTTCTTGAAATCGAATGAACAGAGATTTTCCTTGTACTGTGTACTCCTCCATTGTGGATTCGTGTTTGTGGGAAAACTCAAGTTTGAGGCTTTGAGCAACCAGATACTTCCTTCTCTGTACCATTAACTTAATTTCTTCTGCAGGTTTACGTTCATCATAGCGTTCCTCCTGTTGCTCACCGGTGCTGCGCTGAATGACCGACGCGGTGAAGAAAGCTACTATTTCGGTTACTACGAGTGCTACGTTCTGAAACCGGGGGTTTTTGCTGTCGCAACCATTTTGGCCGCTGCAAGTATAGTGCTGGGACTGTTCTATTACCTCATATTGAACTCTGCAAAAAATGATCCTACAGTGTGGGGCAATCCTTCAGTTCCTCCTCAAGCAAACATTGCAATGGGGCAGCCTCAATTCCCTCCCCCTCCTCCTCCTACTCAACAGAGATCTGGAGACCCCGTTTTCGTTCACGAAGACACGTATATGAGACGACAGTACACATGA ATGGAGAGGAAGGCTGTGGCGGTCTGCTCTGTGGTTGCTTTTTTGGGGCTTTTGGTGGTCGCCACTGGATTCGCCGCTGAGGGCACGCGGATCAAGCTTAGTCAAGTTATTCAAGTCACTCCTAATACGTGCACATATCCCCGAAGTCCAGCGTTGGGGCTTGGTTTGGCAGCAGCTCTATCACTTTTGGTTGCTCAGTTAACGATAAATGTTTCGACGGGTTGCATTTGTTGCATACGGGGGCCTCGGCCTCCCGCTTCTAAATGGAGAACAACCGTGGTCTGCTTTGTCATTTCCTGGTTTACGTTCATCATAGCGTTCCTCCTGTTGCTCACCGGTGCTGCGCTGAATGACCGACGCGGTGAAGAAAGCTACTATTTCGGTTACTACGAGTGCTACGTTCTGAAACCGGGGGTTTTTGCTGTCGCAACCATTTTGGCCGCTGCAAGTATAGTGCTGGGACTGTTCTATTACCTCATATTGAACTCTGCAAAAAATGATCCTACAGTGTGGGGCAATCCTTCAGTTCCTCCTCAAGCAAACATTGCAATGGGGCAGCCTCAATTCCCTCCCCCTCCTCCTCCTACTCAACAGAGATCTGGAGACCCCGTTTTCGTTCACGAAGACACGTATATGAGACGACAGTACACATGA ATGGAGAGGAAGGCTGTGGCGGTCTGCTCTGTGGTTGCTTTTTTGGGGCTTTTGGTGGTCGCCACTGGATTCGCCGCTGAGGGCACGCGGATCAAGCTTAGTCAAGTTATTCAAGTCACTCCTAATACGTGCACATATCCCCGAAGTCCAGCGTTGGGGCTTGGTTTGGCAGCAGCTCTATCACTTTTGGTTGCTCAGTTAACGATAAATGTTTCGACGGGTTGCATTTGTTGCATACGGGGGCCTCGGCCTCCCGCTTCTAAATGGAGAACAACCGTGGTCTGCTTTGTCATTTCCTGGTTTACGTTCATCATAGCGTTCCTCCTGTTGCTCACCGGTGCTGCGCTGAATGACCGACGCGGTGAAGAAAGCTACTATTTCGGTTACTACGAGTGCTACGTTCTGAAACCGGGGGTTTTTGCTGTCGCAACCATTTTGGCCGCTGCAAGTATAGTGCTGGGACTGTTCTATTACCTCATATTGAACTCTGCAAAAAATGATCCTACAGTGTGGGGCAATCCTTCAGTTCCTCCTCAAGCAAACATTGCAATGGGGCAGCCTCAATTCCCTCCCCCTCCTCCTCCTACTCAACAGAGATCTGGAGACCCCGTTTTCGTTCACGAAGACACGTATATGAGACGACAGTACACATGA MERKAVAVCSVVAFLGLLVVATGFAAEGTRIKLSQVIQVTPNTCTYPRSPALGLGLAAALSLLVAQLTINVSTGCICCIRGPRPPASKWRTTVVCFVISWFTFIIAFLLLLTGAALNDRRGEESYYFGYYECYVLKPGVFAVATILAAASIVLGLFYYLILNSAKNDPTVWGNPSVPPQANIAMGQPQFPPPPPPTQQRSGDPVFVHEDTYMRRQYT Homology
BLAST of MS023971 vs. NCBI nr
Match: XP_022140830.1 (uncharacterized protein LOC111011403 [Momordica charantia]) HSP 1 Score: 421.4 bits (1082), Expect = 4.7e-114 Identity = 214/217 (98.62%), Postives = 215/217 (99.08%), Query Frame = 0
BLAST of MS023971 vs. NCBI nr
Match: KAG7014863.1 (hypothetical protein SDJN02_22493 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 353.6 bits (906), Expect = 1.2e-93 Identity = 174/217 (80.18%), Postives = 191/217 (88.02%), Query Frame = 0
BLAST of MS023971 vs. NCBI nr
Match: KAG6576843.1 (Protein MODIFYING WALL LIGNIN-2, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 353.6 bits (906), Expect = 1.2e-93 Identity = 174/217 (80.18%), Postives = 191/217 (88.02%), Query Frame = 0
BLAST of MS023971 vs. NCBI nr
Match: XP_022922463.1 (uncharacterized protein LOC111430466 [Cucurbita moschata]) HSP 1 Score: 353.2 bits (905), Expect = 1.6e-93 Identity = 174/217 (80.18%), Postives = 191/217 (88.02%), Query Frame = 0
BLAST of MS023971 vs. NCBI nr
Match: XP_023551924.1 (uncharacterized protein LOC111809750 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 348.2 bits (892), Expect = 5.1e-92 Identity = 172/217 (79.26%), Postives = 189/217 (87.10%), Query Frame = 0
BLAST of MS023971 vs. ExPASy Swiss-Prot
Match: A2RVU1 (Protein MODIFYING WALL LIGNIN-1 OS=Arabidopsis thaliana OX=3702 GN=MWL1 PE=1 SV=2) HSP 1 Score: 58.2 bits (139), Expect = 1.4e-07 Identity = 45/125 (36.00%), Postives = 69/125 (55.20%), Query Frame = 0
BLAST of MS023971 vs. ExPASy Swiss-Prot
Match: O65708 (Protein MODIFYING WALL LIGNIN-2 OS=Arabidopsis thaliana OX=3702 GN=MWL2 PE=2 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 2.0e-06 Identity = 50/151 (33.11%), Postives = 72/151 (47.68%), Query Frame = 0
BLAST of MS023971 vs. ExPASy TrEMBL
Match: A0A6J1CG96 (uncharacterized protein LOC111011403 OS=Momordica charantia OX=3673 GN=LOC111011403 PE=4 SV=1) HSP 1 Score: 421.4 bits (1082), Expect = 2.3e-114 Identity = 214/217 (98.62%), Postives = 215/217 (99.08%), Query Frame = 0
BLAST of MS023971 vs. ExPASy TrEMBL
Match: A0A6J1E6P1 (uncharacterized protein LOC111430466 OS=Cucurbita moschata OX=3662 GN=LOC111430466 PE=4 SV=1) HSP 1 Score: 353.2 bits (905), Expect = 7.7e-94 Identity = 174/217 (80.18%), Postives = 191/217 (88.02%), Query Frame = 0
BLAST of MS023971 vs. ExPASy TrEMBL
Match: A0A0A0KU80 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G025740 PE=4 SV=1) HSP 1 Score: 310.5 bits (794), Expect = 5.7e-81 Identity = 158/219 (72.15%), Postives = 182/219 (83.11%), Query Frame = 0
BLAST of MS023971 vs. ExPASy TrEMBL
Match: A0A5D3D069 (DUF1218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00200 PE=4 SV=1) HSP 1 Score: 303.5 bits (776), Expect = 7.0e-79 Identity = 154/220 (70.00%), Postives = 178/220 (80.91%), Query Frame = 0
BLAST of MS023971 vs. ExPASy TrEMBL
Match: A0A1S3BX72 (uncharacterized protein LOC103494435 OS=Cucumis melo OX=3656 GN=LOC103494435 PE=4 SV=1) HSP 1 Score: 303.5 bits (776), Expect = 7.0e-79 Identity = 154/220 (70.00%), Postives = 178/220 (80.91%), Query Frame = 0
BLAST of MS023971 vs. TAIR 10
Match: AT5G17210.1 (Protein of unknown function (DUF1218) ) HSP 1 Score: 213.4 bits (542), Expect = 1.8e-55 Identity = 112/220 (50.91%), Postives = 143/220 (65.00%), Query Frame = 0
BLAST of MS023971 vs. TAIR 10
Match: AT5G17210.2 (Protein of unknown function (DUF1218) ) HSP 1 Score: 184.5 bits (467), Expect = 9.1e-47 Identity = 92/174 (52.87%), Postives = 117/174 (67.24%), Query Frame = 0
BLAST of MS023971 vs. TAIR 10
Match: AT1G13380.1 (Protein of unknown function (DUF1218) ) HSP 1 Score: 61.6 bits (148), Expect = 8.9e-10 Identity = 48/166 (28.92%), Postives = 81/166 (48.80%), Query Frame = 0
BLAST of MS023971 vs. TAIR 10
Match: AT4G27435.1 (Protein of unknown function (DUF1218) ) HSP 1 Score: 61.2 bits (147), Expect = 1.2e-09 Identity = 47/167 (28.14%), Postives = 74/167 (44.31%), Query Frame = 0
BLAST of MS023971 vs. TAIR 10
Match: AT1G68220.1 (Protein of unknown function (DUF1218) ) HSP 1 Score: 52.8 bits (125), Expect = 4.1e-07 Identity = 61/197 (30.96%), Postives = 83/197 (42.13%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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