MS023963 (gene) Bitter gourd (TR) v1

Overview


Name	MS023963
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	30S ribosomal protein S11
Location	scaffold44: 188176 .. 189003 (-)
RNA-Seq Expression	MS023963
Synteny	MS023963

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTCGGGCGTTTCAGCATGGAAAAGTTTGGCCGAGCGATTGAGCGGATTTATTTTGGAATCTGTTGATGTTATCGATTCAATATGCTCAGAAAAAAGTGTTAACGATGTCATTTTCTGGCGGAGTAAATTTATTGAGTATTTTTTCATGGTGATGAATGTTTTGCGGATCGCAGGCTGTCTCGACCTTCCACAAGGTGATTCTATGGATGTTGGACGGCAGATTAAAGTAGGACGCGCTTGGAAAGCCTTGGGAGTTATGGGGCGTTCGAGGGAAAATGTCTCAGTTCCTTATGCTGTTAATTCTAAATGCTATGTACACTACGACAGCCGGATAAATGCTGATACAGGGAGGAACTTCAAGTCCATGAACTTCGTCAGGGGAATTTTAGAGGAAGATGGAAGGGATTTTATGGCCGGTTCTCCATTTCCTAGACCACCCAATATGGAGTCCAATGCTGATATTGTCCATGTAAAGCTGATGCGTAACAATACATTTATCACTGTCACTGACAACAAGGGAAATACAAAGCTTAAGGCCTCAGCTGGCCGTCTGGAAGAACTGAAAGGGGGGCCTAAGCTGTCCCGTTATGCTGCTGAAGCAATTGCAGAGTATGTTGGCCGCGAGTCTAGAAAATTGGGGTTAAAATCAGTTGTAATGAGGGTGAAAGGCTTTACTTACTTTAAGAAGAAAAGGCAAGCGATCATGAGTTGGAGAGATGGTTTTACGGATTCTAGGAGCGATCAAAACCCGATTGTCTACATTGAAGATACGACCAGACGCGCCCACAATGGTTGCCGACTCCCGAAGCAACGTCGCGTCTAG

mRNA sequence

ATGGGTTCGGGCGTTTCAGCATGGAAAAGTTTGGCCGAGCGATTGAGCGGATTTATTTTGGAATCTGTTGATGTTATCGATTCAATATGCTCAGAAAAAAGTGTTAACGATGTCATTTTCTGGCGGAGTAAATTTATTGAGTATTTTTTCATGGTGATGAATGTTTTGCGGATCGCAGGCTGTCTCGACCTTCCACAAGGTGATTCTATGGATGTTGGACGGCAGATTAAAGTAGGACGCGCTTGGAAAGCCTTGGGAGTTATGGGGCGTTCGAGGGAAAATGTCTCAGTTCCTTATGCTGTTAATTCTAAATGCTATGTACACTACGACAGCCGGATAAATGCTGATACAGGGAGGAACTTCAAGTCCATGAACTTCGTCAGGGGAATTTTAGAGGAAGATGGAAGGGATTTTATGGCCGGTTCTCCATTTCCTAGACCACCCAATATGGAGTCCAATGCTGATATTGTCCATGTAAAGCTGATGCGTAACAATACATTTATCACTGTCACTGACAACAAGGGAAATACAAAGCTTAAGGCCTCAGCTGGCCGTCTGGAAGAACTGAAAGGGGGGCCTAAGCTGTCCCGTTATGCTGCTGAAGCAATTGCAGAGTATGTTGGCCGCGAGTCTAGAAAATTGGGGTTAAAATCAGTTGTAATGAGGGTGAAAGGCTTTACTTACTTTAAGAAGAAAAGGCAAGCGATCATGAGTTGGAGAGATGGTTTTACGGATTCTAGGAGCGATCAAAACCCGATTGTCTACATTGAAGATACGACCAGACGCGCCCACAATGGTTGCCGACTCCCGAAGCAACGTCGCGTCTAG

Coding sequence (CDS)

ATGGGTTCGGGCGTTTCAGCATGGAAAAGTTTGGCCGAGCGATTGAGCGGATTTATTTTGGAATCTGTTGATGTTATCGATTCAATATGCTCAGAAAAAAGTGTTAACGATGTCATTTTCTGGCGGAGTAAATTTATTGAGTATTTTTTCATGGTGATGAATGTTTTGCGGATCGCAGGCTGTCTCGACCTTCCACAAGGTGATTCTATGGATGTTGGACGGCAGATTAAAGTAGGACGCGCTTGGAAAGCCTTGGGAGTTATGGGGCGTTCGAGGGAAAATGTCTCAGTTCCTTATGCTGTTAATTCTAAATGCTATGTACACTACGACAGCCGGATAAATGCTGATACAGGGAGGAACTTCAAGTCCATGAACTTCGTCAGGGGAATTTTAGAGGAAGATGGAAGGGATTTTATGGCCGGTTCTCCATTTCCTAGACCACCCAATATGGAGTCCAATGCTGATATTGTCCATGTAAAGCTGATGCGTAACAATACATTTATCACTGTCACTGACAACAAGGGAAATACAAAGCTTAAGGCCTCAGCTGGCCGTCTGGAAGAACTGAAAGGGGGGCCTAAGCTGTCCCGTTATGCTGCTGAAGCAATTGCAGAGTATGTTGGCCGCGAGTCTAGAAAATTGGGGTTAAAATCAGTTGTAATGAGGGTGAAAGGCTTTACTTACTTTAAGAAGAAAAGGCAAGCGATCATGAGTTGGAGAGATGGTTTTACGGATTCTAGGAGCGATCAAAACCCGATTGTCTACATTGAAGATACGACCAGACGCGCCCACAATGGTTGCCGACTCCCGAAGCAACGTCGCGTCTAG

Protein sequence

MGSGVSAWKSLAERLSGFILESVDVIDSICSEKSVNDVIFWRSKFIEYFFMVMNVLRIAGCLDLPQGDSMDVGRQIKVGRAWKALGVMGRSRENVSVPYAVNSKCYVHYDSRINADTGRNFKSMNFVRGILEEDGRDFMAGSPFPRPPNMESNADIVHVKLMRNNTFITVTDNKGNTKLKASAGRLEELKGGPKLSRYAAEAIAEYVGRESRKLGLKSVVMRVKGFTYFKKKRQAIMSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKQRRV

Homology

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BLAST of MS023963 vs. NCBI nr
Match: XP_022141322.1 (probable ribosomal protein S11, mitochondrial [Momordica charantia])

HSP 1 Score: 441.8 bits (1135), Expect = 4.3e-120
Identity = 216/219 (98.63%), Postives = 219/219 (100.00%), Query Frame = 0


Query: 57  RIAGCLDLPQGDSMDVGRQIKVGRAWKALGVMGRSRENVSVPYAVNSKCYVHYDSRINAD 116
           +++GCLDLPQGDSMDVGRQIKVGRAWKALGVMGRSRENVSVPYAVNSKCYVHYDSRINAD
Sbjct: 62  QVSGCLDLPQGDSMDVGRQIKVGRAWKALGVMGRSRENVSVPYAVNSKCYVHYDSRINAD 121

Query: 117 TGRNFKSMNFVRGILEEDGRDFMAGSPFPRPPNMESNADIVHVKLMRNNTFITVTDNKGN 176
           TGRNFKSMNFVRGILEEDGRDFMAGSPFPRPPNMESNADIVHVKLMRNNTFITVTDNKGN
Sbjct: 122 TGRNFKSMNFVRGILEEDGRDFMAGSPFPRPPNMESNADIVHVKLMRNNTFITVTDNKGN 181

Query: 177 TKLKASAGRLEELKGGPKLSRYAAEAIAEYVGRESRKLGLKSVVMRVKGFTYFKKKRQAI 236
           TKLKASAGRLEELKGGPKLSRYAAEAIAEYVGRESRKLGLKSVVMRVKGFTYFKKKRQAI
Sbjct: 182 TKLKASAGRLEELKGGPKLSRYAAEAIAEYVGRESRKLGLKSVVMRVKGFTYFKKKRQAI 241

Query: 237 MSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKQRRV 276
           MSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKQRRV
Sbjct: 242 MSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKQRRV 280

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BLAST of MS023963 vs. NCBI nr
Match: XP_022999735.1 (probable ribosomal protein S11, mitochondrial [Cucurbita maxima])

HSP 1 Score: 383.3 bits (983), Expect = 1.8e-102
Identity = 191/223 (85.65%), Postives = 203/223 (91.03%), Query Frame = 0


Query: 59  AGCLDLPQGDSMDVGRQIKVGRAWKALGVMG------RSRENVSVPYAVNSKCYVHYDSR 118
           +GC+DLP+GDS++VGR+I VGRAWKALG  G      RS ENVSVPY+ +S+CYVHYD  
Sbjct: 65  SGCVDLPRGDSVNVGREI-VGRAWKALGAQGPCWGLARSSENVSVPYSSSSRCYVHYDGP 124

Query: 119 INADTGRNFKSMNFVRGILEEDGRDFMAGSPFPRPPNMESNADIVHVKLMRNNTFITVTD 178
            NADTGRNFKSMNFVRGILEEDG +FM  S FPRPPNME NADIVHVKLMRNNTFITVTD
Sbjct: 125 PNADTGRNFKSMNFVRGILEEDGMNFMGSSQFPRPPNMEHNADIVHVKLMRNNTFITVTD 184

Query: 179 NKGNTKLKASAGRLEELKGGPKLSRYAAEAIAEYVGRESRKLGLKSVVMRVKGFTYFKKK 238
           NKGNTKLKASAGRLEELKGGPKLSRYAAEA AEYVGRESRKLGLKSVVMRVKGFTYFKKK
Sbjct: 185 NKGNTKLKASAGRLEELKGGPKLSRYAAEATAEYVGRESRKLGLKSVVMRVKGFTYFKKK 244

Query: 239 RQAIMSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKQRRV 276
           +QAI+SWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKQRRV
Sbjct: 245 KQAILSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKQRRV 286

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BLAST of MS023963 vs. NCBI nr
Match: KAG7030891.1 (putative ribosomal protein S11, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 382.5 bits (981), Expect = 3.1e-102
Identity = 189/223 (84.75%), Postives = 203/223 (91.03%), Query Frame = 0


Query: 59  AGCLDLPQGDSMDVGRQIKVGRAWKALGVMG------RSRENVSVPYAVNSKCYVHYDSR 118
           +GC+DLP+GDS++VGR+I VGRAWKALG  G      RS ENVSVPY+ +S+CYVHYD R
Sbjct: 65  SGCVDLPRGDSVNVGREI-VGRAWKALGAQGPCWGLARSSENVSVPYSSSSRCYVHYDGR 124

Query: 119 INADTGRNFKSMNFVRGILEEDGRDFMAGSPFPRPPNMESNADIVHVKLMRNNTFITVTD 178
            NADTGRNFKSMNFVRGILEEDG DFM  S FPRPPNME NADIVHVKLMRNNTFITVTD
Sbjct: 125 PNADTGRNFKSMNFVRGILEEDGMDFMGSSQFPRPPNMEHNADIVHVKLMRNNTFITVTD 184

Query: 179 NKGNTKLKASAGRLEELKGGPKLSRYAAEAIAEYVGRESRKLGLKSVVMRVKGFTYFKKK 238
           NKGNTKLKAS+GRLEELKGGPKLSRYAAEA AEYVGRES+KLGLKSVVMRVKGFTYFKKK
Sbjct: 185 NKGNTKLKASSGRLEELKGGPKLSRYAAEATAEYVGRESKKLGLKSVVMRVKGFTYFKKK 244

Query: 239 RQAIMSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKQRRV 276
           +QAI+SWRDGFTDS+ DQNPIVYIEDTTRRAHNGCRLPKQRRV
Sbjct: 245 KQAILSWRDGFTDSKRDQNPIVYIEDTTRRAHNGCRLPKQRRV 286

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BLAST of MS023963 vs. NCBI nr
Match: KAG6600233.1 (putative ribosomal protein S11, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 382.5 bits (981), Expect = 3.1e-102
Identity = 189/223 (84.75%), Postives = 203/223 (91.03%), Query Frame = 0


Query: 59  AGCLDLPQGDSMDVGRQIKVGRAWKALGVMG------RSRENVSVPYAVNSKCYVHYDSR 118
           +GC+DLP+GDS++VGR+I VGRAWKALG  G      RS ENVSVPY+ +S+CYVHYD R
Sbjct: 23  SGCVDLPRGDSVNVGREI-VGRAWKALGAQGPCWGLARSSENVSVPYSSSSRCYVHYDGR 82

Query: 119 INADTGRNFKSMNFVRGILEEDGRDFMAGSPFPRPPNMESNADIVHVKLMRNNTFITVTD 178
            NADTGRNFKSMNFVRGILEEDG DFM  S FPRPPNME NADIVHVKLMRNNTFITVTD
Sbjct: 83  PNADTGRNFKSMNFVRGILEEDGMDFMGSSQFPRPPNMEHNADIVHVKLMRNNTFITVTD 142

Query: 179 NKGNTKLKASAGRLEELKGGPKLSRYAAEAIAEYVGRESRKLGLKSVVMRVKGFTYFKKK 238
           NKGNTKLKAS+GRLEELKGGPKLSRYAAEA AEYVGRES+KLGLKSVVMRVKGFTYFKKK
Sbjct: 143 NKGNTKLKASSGRLEELKGGPKLSRYAAEATAEYVGRESKKLGLKSVVMRVKGFTYFKKK 202

Query: 239 RQAIMSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKQRRV 276
           +QAI+SWRDGFTDS+ DQNPIVYIEDTTRRAHNGCRLPKQRRV
Sbjct: 203 KQAILSWRDGFTDSKRDQNPIVYIEDTTRRAHNGCRLPKQRRV 244

[Close]

BLAST of MS023963 vs. NCBI nr
Match: XP_022942058.1 (probable ribosomal protein S11, mitochondrial [Cucurbita moschata])

HSP 1 Score: 380.6 bits (976), Expect = 1.2e-101
Identity = 188/223 (84.30%), Postives = 203/223 (91.03%), Query Frame = 0


Query: 59  AGCLDLPQGDSMDVGRQIKVGRAWKALGVMG------RSRENVSVPYAVNSKCYVHYDSR 118
           +GC++LP+GDS++VGR+I VGRAWKALG  G      RS ENVSVPY+ +S+CYVHYD R
Sbjct: 65  SGCVNLPRGDSVNVGREI-VGRAWKALGAQGPCWGLARSSENVSVPYSSSSRCYVHYDGR 124

Query: 119 INADTGRNFKSMNFVRGILEEDGRDFMAGSPFPRPPNMESNADIVHVKLMRNNTFITVTD 178
            NADTGRNFKSMNFVRGILEEDG DFM  S FPRPPNME NADIVHVKLMRNNTFITVTD
Sbjct: 125 PNADTGRNFKSMNFVRGILEEDGMDFMGSSQFPRPPNMEHNADIVHVKLMRNNTFITVTD 184

Query: 179 NKGNTKLKASAGRLEELKGGPKLSRYAAEAIAEYVGRESRKLGLKSVVMRVKGFTYFKKK 238
           NKGNTKLKAS+GRLEELKGGPKLSRYAAEA AEYVGRES+KLGLKSVVMRVKGFTYFKKK
Sbjct: 185 NKGNTKLKASSGRLEELKGGPKLSRYAAEATAEYVGRESKKLGLKSVVMRVKGFTYFKKK 244

Query: 239 RQAIMSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKQRRV 276
           +QAI+SWRDGFTDS+ DQNPIVYIEDTTRRAHNGCRLPKQRRV
Sbjct: 245 KQAILSWRDGFTDSKRDQNPIVYIEDTTRRAHNGCRLPKQRRV 286

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BLAST of MS023963 vs. ExPASy Swiss-Prot
Match: Q8VZT8 (Probable ribosomal protein S11, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NFD3 PE=1 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.3e-50
Identity = 93/162 (57.41%), Postives = 132/162 (81.48%), Query Frame = 0


Query: 114 NADTGRNFKSMNFVRGILEEDGRDFMAGSPFPRPPNMESNADIVHVKLMRNNTFITVTDN 173
           N+ +G     ++FVR ++E++GR         + PN+E+NADI+H+K++RNNTF+TVTD+
Sbjct: 153 NSRSGGKSSDLDFVREVIEDEGRRTAGIFSHFQRPNLETNADIIHIKMLRNNTFVTVTDS 212

Query: 174 KGNTKLKASAGRLEELKGGPKLSRYAAEAIAEYVGRESRKLGLKSVVMRVKGFTYFKKKR 233
           KGN K KA++G L +LKGG K++ Y A+A AE +GR ++ +GLKSVV++V GFT+F KK+
Sbjct: 213 KGNVKCKATSGSLPDLKGGRKMTNYTADATAENIGRRAKAMGLKSVVVKVNGFTHFGKKK 272

Query: 234 QAIMSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKQRRV 276
           +AI+++RDGFT+SRSDQNPIVYIEDTTR+AHNGCRLP++RRV
Sbjct: 273 KAIIAFRDGFTNSRSDQNPIVYIEDTTRKAHNGCRLPRKRRV 314

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BLAST of MS023963 vs. ExPASy Swiss-Prot
Match: P46746 (Ribosomal protein S11, mitochondrial OS=Prototheca wickerhamii OX=3111 GN=RPS11 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-11
Identity = 45/126 (35.71%), Postives = 68/126 (53.97%), Query Frame = 0


Query: 150 MESNADIVHVKLMRNNTFITVTDNKGNTKLKASAGRLEELKGGPKLSRYAAEAIAEYVGR 209
           +E  + IVH++   NNT IT+TD +GNT+   SAG L   K   K + YA+ A AE +  
Sbjct: 13  IEKKSGIVHIQSTTNNTLITLTDLEGNTQFFVSAGTL-GFKNSRKSTVYASGAAAEALAS 72

Query: 210 ESRKLGLKSVVMRVKGFTYFKKKRQAIMSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRL 269
           ++   G +++++++KG  Y KK               +     I  I++ T  AHNGCR 
Sbjct: 73  KAFNEGYRTIIVKIKGLGYGKK---------SAIRGLQKSNLVIKQIQEVTPIAHNGCRP 128

Query: 270 PKQRRV 276
           PK+RRV
Sbjct: 133 PKKRRV 128

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BLAST of MS023963 vs. ExPASy Swiss-Prot
Match: A8ETK4 (30S ribosomal protein S11 OS=Arcobacter butzleri (strain RM4018) OX=367737 GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.7e-10
Identity = 43/120 (35.83%), Postives = 65/120 (54.17%), Query Frame = 0


Query: 156 IVHVKLMRNNTFITVTDNKGNTKLKASAGRLEELKGGPKLSRYAAEAIAEYVGRESRKLG 215
           IVH+    NNT +TVTDN GN    +SAG L   KG  K + +AA+A  E    ++ + G
Sbjct: 20  IVHIAASFNNTMVTVTDNAGNAIAWSSAGNL-GFKGSKKSTPFAAQAAVEDAMNKAMEHG 79

Query: 216 LKSVVMRVKGFTYFKKKRQAIMSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKQRRV 275
           +K+V ++++G    +      +   DG          + +++D T  AHNGCR PK+RRV
Sbjct: 80  IKNVGIKIQGPGSGRDTAVKAVGSMDGVR--------VTWLKDVTPLAHNGCRPPKRRRV 130

[Close]

BLAST of MS023963 vs. ExPASy Swiss-Prot
Match: A5D5E6 (30S ribosomal protein S11 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) OX=370438 GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.7e-10
Identity = 47/120 (39.17%), Postives = 66/120 (55.00%), Query Frame = 0


Query: 156 IVHVKLMRNNTFITVTDNKGNTKLKASAGRLEELKGGPKLSRYAAEAIAEYVGRESRKLG 215
           + H+K   NNT +T+TD KGNT   +SAG++   KG  K + +AA+  AE   RE+ + G
Sbjct: 20  VAHIKSTFNNTIVTITDTKGNTISWSSAGQV-GFKGSRKSTPFAAQMAAESAAREAMEHG 79

Query: 216 LKSVVMRVKGFTYFKKKRQAIMSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKQRRV 275
           LK V + VKG      +  AI S +    +       +  I+D T   HNGCR PK+RRV
Sbjct: 80  LKEVEVMVKG--PGAGREAAIRSLQAAGLE-------VNLIKDVTPIPHNGCRPPKRRRV 129

[Close]

BLAST of MS023963 vs. ExPASy Swiss-Prot
Match: Q0BYD7 (30S ribosomal protein S11 OS=Hyphomonas neptunium (strain ATCC 15444) OX=228405 GN=rpsK PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.9e-10
Identity = 45/120 (37.50%), Postives = 67/120 (55.83%), Query Frame = 0


Query: 156 IVHVKLMRNNTFITVTDNKGNTKLKASAGRLEELKGGPKLSRYAAEAIAEYVGRESRKLG 215
           IVHV    NNT +T+TD +GNT   +S+G +   KG  K + YAA+  AE   +++++ G
Sbjct: 20  IVHVNSSFNNTMVTITDAQGNTISWSSSG-VMNFKGSRKSTPYAAQMAAEDAAKKAKEHG 79

Query: 216 LKSVVMRVKGFTYFKKKRQAIMSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKQRRV 275
           L++V +RV+G    ++     +    G T        +  I DTT   HNGCR PK+RRV
Sbjct: 80  LQTVEVRVRGPGSGRESALRALQ-AAGLT--------VTAINDTTPIPHNGCRPPKRRRV 129

[Close]

BLAST of MS023963 vs. ExPASy TrEMBL
Match: A0A6J1CJJ5 (probable ribosomal protein S11, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111011744 PE=3 SV=1)

HSP 1 Score: 441.8 bits (1135), Expect = 2.1e-120
Identity = 216/219 (98.63%), Postives = 219/219 (100.00%), Query Frame = 0


Query: 57  RIAGCLDLPQGDSMDVGRQIKVGRAWKALGVMGRSRENVSVPYAVNSKCYVHYDSRINAD 116
           +++GCLDLPQGDSMDVGRQIKVGRAWKALGVMGRSRENVSVPYAVNSKCYVHYDSRINAD
Sbjct: 62  QVSGCLDLPQGDSMDVGRQIKVGRAWKALGVMGRSRENVSVPYAVNSKCYVHYDSRINAD 121

Query: 117 TGRNFKSMNFVRGILEEDGRDFMAGSPFPRPPNMESNADIVHVKLMRNNTFITVTDNKGN 176
           TGRNFKSMNFVRGILEEDGRDFMAGSPFPRPPNMESNADIVHVKLMRNNTFITVTDNKGN
Sbjct: 122 TGRNFKSMNFVRGILEEDGRDFMAGSPFPRPPNMESNADIVHVKLMRNNTFITVTDNKGN 181

Query: 177 TKLKASAGRLEELKGGPKLSRYAAEAIAEYVGRESRKLGLKSVVMRVKGFTYFKKKRQAI 236
           TKLKASAGRLEELKGGPKLSRYAAEAIAEYVGRESRKLGLKSVVMRVKGFTYFKKKRQAI
Sbjct: 182 TKLKASAGRLEELKGGPKLSRYAAEAIAEYVGRESRKLGLKSVVMRVKGFTYFKKKRQAI 241

Query: 237 MSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKQRRV 276
           MSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKQRRV
Sbjct: 242 MSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKQRRV 280

[Close]

BLAST of MS023963 vs. ExPASy TrEMBL
Match: A0A6J1KGF8 (probable ribosomal protein S11, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111493991 PE=3 SV=1)

HSP 1 Score: 383.3 bits (983), Expect = 8.8e-103
Identity = 191/223 (85.65%), Postives = 203/223 (91.03%), Query Frame = 0


Query: 59  AGCLDLPQGDSMDVGRQIKVGRAWKALGVMG------RSRENVSVPYAVNSKCYVHYDSR 118
           +GC+DLP+GDS++VGR+I VGRAWKALG  G      RS ENVSVPY+ +S+CYVHYD  
Sbjct: 65  SGCVDLPRGDSVNVGREI-VGRAWKALGAQGPCWGLARSSENVSVPYSSSSRCYVHYDGP 124

Query: 119 INADTGRNFKSMNFVRGILEEDGRDFMAGSPFPRPPNMESNADIVHVKLMRNNTFITVTD 178
            NADTGRNFKSMNFVRGILEEDG +FM  S FPRPPNME NADIVHVKLMRNNTFITVTD
Sbjct: 125 PNADTGRNFKSMNFVRGILEEDGMNFMGSSQFPRPPNMEHNADIVHVKLMRNNTFITVTD 184

Query: 179 NKGNTKLKASAGRLEELKGGPKLSRYAAEAIAEYVGRESRKLGLKSVVMRVKGFTYFKKK 238
           NKGNTKLKASAGRLEELKGGPKLSRYAAEA AEYVGRESRKLGLKSVVMRVKGFTYFKKK
Sbjct: 185 NKGNTKLKASAGRLEELKGGPKLSRYAAEATAEYVGRESRKLGLKSVVMRVKGFTYFKKK 244

Query: 239 RQAIMSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKQRRV 276
           +QAI+SWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKQRRV
Sbjct: 245 KQAILSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKQRRV 286

[Close]

BLAST of MS023963 vs. ExPASy TrEMBL
Match: A0A6J1FTT5 (probable ribosomal protein S11, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111447246 PE=3 SV=1)

HSP 1 Score: 380.6 bits (976), Expect = 5.7e-102
Identity = 188/223 (84.30%), Postives = 203/223 (91.03%), Query Frame = 0


Query: 59  AGCLDLPQGDSMDVGRQIKVGRAWKALGVMG------RSRENVSVPYAVNSKCYVHYDSR 118
           +GC++LP+GDS++VGR+I VGRAWKALG  G      RS ENVSVPY+ +S+CYVHYD R
Sbjct: 65  SGCVNLPRGDSVNVGREI-VGRAWKALGAQGPCWGLARSSENVSVPYSSSSRCYVHYDGR 124

Query: 119 INADTGRNFKSMNFVRGILEEDGRDFMAGSPFPRPPNMESNADIVHVKLMRNNTFITVTD 178
            NADTGRNFKSMNFVRGILEEDG DFM  S FPRPPNME NADIVHVKLMRNNTFITVTD
Sbjct: 125 PNADTGRNFKSMNFVRGILEEDGMDFMGSSQFPRPPNMEHNADIVHVKLMRNNTFITVTD 184

Query: 179 NKGNTKLKASAGRLEELKGGPKLSRYAAEAIAEYVGRESRKLGLKSVVMRVKGFTYFKKK 238
           NKGNTKLKAS+GRLEELKGGPKLSRYAAEA AEYVGRES+KLGLKSVVMRVKGFTYFKKK
Sbjct: 185 NKGNTKLKASSGRLEELKGGPKLSRYAAEATAEYVGRESKKLGLKSVVMRVKGFTYFKKK 244

Query: 239 RQAIMSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKQRRV 276
           +QAI+SWRDGFTDS+ DQNPIVYIEDTTRRAHNGCRLPKQRRV
Sbjct: 245 KQAILSWRDGFTDSKRDQNPIVYIEDTTRRAHNGCRLPKQRRV 286

[Close]

BLAST of MS023963 vs. ExPASy TrEMBL
Match: A0A5D3E7T5 (Putative ribosomal protein S11 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold398G00260 PE=3 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 5.0e-82
Identity = 164/226 (72.57%), Postives = 186/226 (82.30%), Query Frame = 0


Query: 58  IAGCLDLPQGDSMDVGRQIKVGRAWKALGVMG------RSRENVSVPYAVNSKCYVHYDS 117
           + G L      S  VGR+I VGR WKA+GV G      RS E+VSVPY+++S+CY  YD+
Sbjct: 58  LTGSLQPHNHFSGSVGREI-VGRGWKAMGVQGPSWGLARSTESVSVPYSISSRCYGEYDN 117

Query: 118 RIN-ADTGRNFKSMNFVRGILEEDGRDFMAGSPFPRPPNMESNADIVHVKLMRNNTFITV 177
           R N  DTGRN K++NFVRGILEED + F     + RP NME NADIVH+KLMRNN F+TV
Sbjct: 118 RPNPPDTGRNLKTLNFVRGILEEDEKVFSDVPQYLRPTNMEHNADIVHIKLMRNNAFVTV 177

Query: 178 TDNKGNTKLKASAGRLEELK-GGPKLSRYAAEAIAEYVGRESRKLGLKSVVMRVKGFTYF 237
           TDNKGNTKLKASAGRLEELK GG KLSRY+ ++IAEYVGRESRKLGLKSVVMRVKGFT+F
Sbjct: 178 TDNKGNTKLKASAGRLEELKGGGAKLSRYSGDSIAEYVGRESRKLGLKSVVMRVKGFTFF 237

Query: 238 KKKRQAIMSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKQRRV 276
           KKK+QAI+SWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPK+RRV
Sbjct: 238 KKKKQAILSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKKRRV 282

[Close]

BLAST of MS023963 vs. ExPASy TrEMBL
Match: A0A5A7TPI6 (Putative ribosomal protein S11 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G00350 PE=3 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 5.0e-82
Identity = 164/226 (72.57%), Postives = 186/226 (82.30%), Query Frame = 0


Query: 58  IAGCLDLPQGDSMDVGRQIKVGRAWKALGVMG------RSRENVSVPYAVNSKCYVHYDS 117
           + G L      S  VGR+I VGR WKA+GV G      RS E+VSVPY+++S+CY  YD+
Sbjct: 51  LTGSLQPHNHFSGSVGREI-VGRGWKAMGVQGPSWGLARSTESVSVPYSISSRCYGEYDN 110

Query: 118 RIN-ADTGRNFKSMNFVRGILEEDGRDFMAGSPFPRPPNMESNADIVHVKLMRNNTFITV 177
           R N  DTGRN K++NFVRGILEED + F     + RP NME NADIVH+KLMRNN F+TV
Sbjct: 111 RPNPPDTGRNLKTLNFVRGILEEDEKVFSDVPQYLRPTNMEHNADIVHIKLMRNNAFVTV 170

Query: 178 TDNKGNTKLKASAGRLEELK-GGPKLSRYAAEAIAEYVGRESRKLGLKSVVMRVKGFTYF 237
           TDNKGNTKLKASAGRLEELK GG KLSRY+ ++IAEYVGRESRKLGLKSVVMRVKGFT+F
Sbjct: 171 TDNKGNTKLKASAGRLEELKGGGAKLSRYSGDSIAEYVGRESRKLGLKSVVMRVKGFTFF 230

Query: 238 KKKRQAIMSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKQRRV 276
           KKK+QAI+SWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPK+RRV
Sbjct: 231 KKKKQAILSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKKRRV 275

[Close]

BLAST of MS023963 vs. TAIR 10
Match: AT1G31817.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 201.4 bits (511), Expect = 9.1e-52
Identity = 93/162 (57.41%), Postives = 132/162 (81.48%), Query Frame = 0


Query: 114 NADTGRNFKSMNFVRGILEEDGRDFMAGSPFPRPPNMESNADIVHVKLMRNNTFITVTDN 173
           N+ +G     ++FVR ++E++GR         + PN+E+NADI+H+K++RNNTF+TVTD+
Sbjct: 153 NSRSGGKSSDLDFVREVIEDEGRRTAGIFSHFQRPNLETNADIIHIKMLRNNTFVTVTDS 212

Query: 174 KGNTKLKASAGRLEELKGGPKLSRYAAEAIAEYVGRESRKLGLKSVVMRVKGFTYFKKKR 233
           KGN K KA++G L +LKGG K++ Y A+A AE +GR ++ +GLKSVV++V GFT+F KK+
Sbjct: 213 KGNVKCKATSGSLPDLKGGRKMTNYTADATAENIGRRAKAMGLKSVVVKVNGFTHFGKKK 272

Query: 234 QAIMSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKQRRV 276
           +AI+++RDGFT+SRSDQNPIVYIEDTTR+AHNGCRLP++RRV
Sbjct: 273 KAIIAFRDGFTNSRSDQNPIVYIEDTTRKAHNGCRLPRKRRV 314

[Close]

BLAST of MS023963 vs. TAIR 10
Match: ATCG00750.1 (ribosomal protein S11 )

HSP 1 Score: 47.0 bits (110), Expect = 2.9e-05
Identity = 36/120 (30.00%), Postives = 57/120 (47.50%), Query Frame = 0


Query: 156 IVHVKLMRNNTFITVTDNKGNTKLKASAGRLEELKGGPKLSRYAAEAIAEYVGRESRKLG 215
           ++HV+   NNT +TVTD +G     +SAG     +G  + + +AA+  A    R     G
Sbjct: 29  VIHVQASFNNTIVTVTDVRGRVISWSSAGTC-GFRGTRRGTPFAAQTAAGNAIRAVVDQG 88

Query: 216 LKSVVMRVKGFTYFKKKRQAIMSWRDGFTDSRSDQNPIVYIEDTTRRAHNGCRLPKQRRV 275
           ++   +R+KG    +      +  R G          + ++ D T   HNGCR PK+RRV
Sbjct: 89  MQRAEVRIKGPGLGRDAALRAIR-RSGIL--------LSFVRDVTPMPHNGCRPPKKRRV 138

The following BLAST results are available for this feature:

BLAST of MS023963 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022141322.1	4.3e-120	98.63	probable ribosomal protein S11, mitochondrial [Momordica charantia]	[more]
XP_022999735.1	1.8e-102	85.65	probable ribosomal protein S11, mitochondrial [Cucurbita maxima]	[more]
KAG7030891.1	3.1e-102	84.75	putative ribosomal protein S11, mitochondrial [Cucurbita argyrosperma subsp. arg...	[more]
KAG6600233.1	3.1e-102	84.75	putative ribosomal protein S11, mitochondrial, partial [Cucurbita argyrosperma s...	[more]
XP_022942058.1	1.2e-101	84.30	probable ribosomal protein S11, mitochondrial [Cucurbita moschata]	[more]

BLAST of MS023963 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VZT8	1.3e-50	57.41	Probable ribosomal protein S11, mitochondrial OS=Arabidopsis thaliana OX=3702 GN...	[more]
P46746	1.2e-11	35.71	Ribosomal protein S11, mitochondrial OS=Prototheca wickerhamii OX=3111 GN=RPS11 ...	[more]
A8ETK4	1.7e-10	35.83	30S ribosomal protein S11 OS=Arcobacter butzleri (strain RM4018) OX=367737 GN=rp...	[more]
A5D5E6	1.7e-10	39.17	30S ribosomal protein S11 OS=Pelotomaculum thermopropionicum (strain DSM 13744 /...	[more]
Q0BYD7	4.9e-10	37.50	30S ribosomal protein S11 OS=Hyphomonas neptunium (strain ATCC 15444) OX=228405 ...	[more]

BLAST of MS023963 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CJJ5	2.1e-120	98.63	probable ribosomal protein S11, mitochondrial OS=Momordica charantia OX=3673 GN=...	[more]
A0A6J1KGF8	8.8e-103	85.65	probable ribosomal protein S11, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1FTT5	5.7e-102	84.30	probable ribosomal protein S11, mitochondrial OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A5D3E7T5	5.0e-82	72.57	Putative ribosomal protein S11 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7TPI6	5.0e-82	72.57	Putative ribosomal protein S11 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]

BLAST of MS023963 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G31817.1	9.1e-52	57.41	Ribosomal L18p/L5e family protein	[more]
ATCG00750.1	2.9e-05	30.00	ribosomal protein S11	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001971	Ribosomal protein S11	PFAM	PF00411	Ribosomal_S11	coord: 156..274 e-value: 2.8E-13 score: 50.2
IPR001971	Ribosomal protein S11	PANTHER	PTHR11759	40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11	coord: 92..275
IPR001971	Ribosomal protein S11	HAMAP	MF_01310	Ribosomal_S11	coord: 74..275 score: 15.968771
IPR036967	Ribosomal protein S11 superfamily	GENE3D	3.30.420.80	Ribosomal protein S11	coord: 147..275 e-value: 1.2E-33 score: 118.2
None	No IPR available	PANTHER	PTHR11759:SF34	RIBOSOMAL PROTEIN S11, MITOCHONDRIAL-RELATED	coord: 92..275
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 155..275

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS023963.1	MS023963.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome