MS023848 (gene) Bitter gourd (TR) v1

Overview
NameMS023848
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold368: 192774 .. 192959 (+)
RNA-Seq ExpressionMS023848
SyntenyMS023848
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGGAGGAGGCTCTCCATCGCACTCCATTTAGGGATAGGGGTCGATTTTCGTGGCAGATGAGTTTCTTAGTTGTTCTTTTGGGTTTGTGGAAGGAAAGAAACAACAGCATTTTAAGAGGAGTTAAGAGATCTTGGGAGGATCTGTGGTCCTTATTTGGTTTCATGTTTCACTTTGAGGTTTGTAAT

mRNA sequence

TTGGAGGAGGCTCTCCATCGCACTCCATTTAGGGATAGGGGTCGATTTTCGTGGCAGATGAGTTTCTTAGTTGTTCTTTTGGGTTTGTGGAAGGAAAGAAACAACAGCATTTTAAGAGGAGTTAAGAGATCTTGGGAGGATCTGTGGTCCTTATTTGGTTTCATGTTTCACTTTGAGGTTTGTAAT

Coding sequence (CDS)

TTGGAGGAGGCTCTCCATCGCACTCCATTTAGGGATAGGGGTCGATTTTCGTGGCAGATGAGTTTCTTAGTTGTTCTTTTGGGTTTGTGGAAGGAAAGAAACAACAGCATTTTAAGAGGAGTTAAGAGATCTTGGGAGGATCTGTGGTCCTTATTTGGTTTCATGTTTCACTTTGAGGTTTGTAAT

Protein sequence

LEEALHRTPFRDRGRFSWQMSFLVVLLGLWKERNNSILRGVKRSWEDLWSLFGFMFHFEVCN
Homology
[Close]
BLAST of MS023848 vs. NCBI nr
Match: XP_022151711.1 (uncharacterized protein LOC111019624 [Momordica charantia])

HSP 1 Score: 54.7 bits (130), Expect = 3.3e-04
Identity = 22/36 (61.11%), Postives = 27/36 (75.00%), Query Frame = 0 

Query: 9   PFRDRGRFSWQMSFLVVLLGLWKERNNSILRGVKRS 45
           PFR+RGRF WQ  FL  L G+W ERNN + RGV++S
Sbjct: 464 PFRNRGRFLWQACFLASLWGIWLERNNRLFRGVEKS 499

[Close]
BLAST of MS023848 vs. ExPASy TrEMBL
Match: A0A6J1DFI2 (uncharacterized protein LOC111019624 OS=Momordica charantia OX=3673 GN=LOC111019624 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.6e-04
Identity = 22/36 (61.11%), Postives = 27/36 (75.00%), Query Frame = 0 

Query: 9   PFRDRGRFSWQMSFLVVLLGLWKERNNSILRGVKRS 45
           PFR+RGRF WQ  FL  L G+W ERNN + RGV++S
Sbjct: 464 PFRNRGRFLWQACFLASLWGIWLERNNRLFRGVEKS 499

The following BLAST results are available for this feature:
BLAST of MS023848 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022151711.13.3e-0461.11uncharacterized protein LOC111019624 [Momordica charantia][more]
BLAST of MS023848 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS023848 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DFI21.6e-0461.11uncharacterized protein LOC111019624 OS=Momordica charantia OX=3673 GN=LOC111019... [more]
BLAST of MS023848 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS023848.1MS023848.1mRNA