MS023825 (gene) Bitter gourd (TR) v1

Overview
NameMS023825
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionprotein SRC1
Locationscaffold207: 1026942 .. 1027244 (-)
RNA-Seq ExpressionMS023825
SyntenyMS023825
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAGGATTCATCGAGAAAATTGAAGAGAAGCTCCACATCGGAGGGGGCCATAAGGGCGACGAGCACCACAAGAGCGGCGATCACCACAAGGGCGACGATCACCACAAGAGCGGCGAGCACGGCGCCAAGGCGGGGGAGCACCACAAGGAGGGGATTGTGGATAAGATCAAGGACAAGATCCACGGCGACGGACACGACCACGACCACAAAGGCGAGGAGAAGAAGAAGAAGAAGGAGAAGAAGAAGAAGGAGGGCGAGCACAACCACGGCGGCCACAGCAGCAGCGACAGCGATAGCGAC

mRNA sequence

ATGTCAGGATTCATCGAGAAAATTGAAGAGAAGCTCCACATCGGAGGGGGCCATAAGGGCGACGAGCACCACAAGAGCGGCGATCACCACAAGGGCGACGATCACCACAAGAGCGGCGAGCACGGCGCCAAGGCGGGGGAGCACCACAAGGAGGGGATTGTGGATAAGATCAAGGACAAGATCCACGGCGACGGACACGACCACGACCACAAAGGCGAGGAGAAGAAGAAGAAGAAGGAGAAGAAGAAGAAGGAGGGCGAGCACAACCACGGCGGCCACAGCAGCAGCGACAGCGATAGCGAC

Coding sequence (CDS)

ATGTCAGGATTCATCGAGAAAATTGAAGAGAAGCTCCACATCGGAGGGGGCCATAAGGGCGACGAGCACCACAAGAGCGGCGATCACCACAAGGGCGACGATCACCACAAGAGCGGCGAGCACGGCGCCAAGGCGGGGGAGCACCACAAGGAGGGGATTGTGGATAAGATCAAGGACAAGATCCACGGCGACGGACACGACCACGACCACAAAGGCGAGGAGAAGAAGAAGAAGAAGGAGAAGAAGAAGAAGGAGGGCGAGCACAACCACGGCGGCCACAGCAGCAGCGACAGCGATAGCGAC

Protein sequence

MSGFIEKIEEKLHIGGGHKGDEHHKSGDHHKGDDHHKSGEHGAKAGEHHKEGIVDKIKDKIHGDGHDHDHKGEEKKKKKEKKKKEGEHNHGGHSSSDSDSD
Homology
BLAST of MS023825 vs. NCBI nr
Match: XP_022158601.1 (protein SRC1 [Momordica charantia])

HSP 1 Score: 186.0 bits (471), Expect = 1.6e-43
Identity = 99/101 (98.02%), Postives = 100/101 (99.01%), Query Frame = 0

Query: 1   MSGFIEKIEEKLHIGGGHKGDEHHKSGDHHKGDDHHKSGEHGAKAGEHHKEGIVDKIKDK 60
           MSGFIEKIEEKLHIGGGHKGDEHHKSGDHHKGDDHHKSGEHGAKAGEHHKEGIVDKIKDK
Sbjct: 1   MSGFIEKIEEKLHIGGGHKGDEHHKSGDHHKGDDHHKSGEHGAKAGEHHKEGIVDKIKDK 60

Query: 61  IHGDGHDHDHKGEEKKKKKEKKKKEGEHNHGGHSSSDSDSD 102
           IHGDGHDHDHKG EKKKKKEKKKKEGEH+HGGHSSSDSDSD
Sbjct: 61  IHGDGHDHDHKG-EKKKKKEKKKKEGEHHHGGHSSSDSDSD 100

BLAST of MS023825 vs. NCBI nr
Match: XP_022973362.1 (protein SRC1-like [Cucurbita maxima] >XP_022975607.1 protein SRC1-like [Cucurbita maxima])

HSP 1 Score: 104.4 bits (259), Expect = 6.0e-19
Identity = 71/105 (67.62%), Postives = 80/105 (76.19%), Query Frame = 0

Query: 1   MSGFIEKIEEKLHIGGGHKGDEHHKSGDHHKGDDHHKSGEHGAKA---GEHHKEGIVDKI 60
           MSG +EKI EKLHIGG HKG+  HK GDHH+ D H    +HG K+   GE HKEG+++KI
Sbjct: 1   MSGIMEKIGEKLHIGGDHKGE--HK-GDHHEKDKHEHEKKHGEKSEHHGEGHKEGLMEKI 60

Query: 61  KDKIHGDGHDHDHKGEEKKKKKEKKKKEGEHNHGGH-SSSDSDSD 102
           KDKIHG G  HD KGE+KKKKKEKKKK GEH  GGH SSSDSDSD
Sbjct: 61  KDKIHGGGDHHDEKGEKKKKKKEKKKK-GEHQEGGHSSSSDSDSD 101

BLAST of MS023825 vs. NCBI nr
Match: XP_038903205.1 (protein SRC1 [Benincasa hispida])

HSP 1 Score: 104.0 bits (258), Expect = 7.8e-19
Identity = 68/105 (64.76%), Postives = 80/105 (76.19%), Query Frame = 0

Query: 1   MSGFIEKIEEKLHIGGGHKGDEHH--KSGDHHKGDDHHKSGEHGAKAGEHHKEGIVDKIK 60
           MSGFIEKI EKLHIGG H   EHH    G+HH  D+H K G+     GE HKEG+++KIK
Sbjct: 1   MSGFIEKIGEKLHIGGDHNKGEHHDGHKGEHH--DEHKKHGKSEEHHGEGHKEGLIEKIK 60

Query: 61  DKIHGDGHDHDHKGEEKKKKKEKKKKEGEHNH--GGHSSSDSDSD 102
           DKIHG   DHD KGE+KKK+K++KKK+GEH+H  GGHSSSDSDSD
Sbjct: 61  DKIHG---DHDEKGEKKKKEKKEKKKKGEHHHHDGGHSSSDSDSD 100

BLAST of MS023825 vs. NCBI nr
Match: XP_022974702.1 (protein SRC1-like [Cucurbita maxima])

HSP 1 Score: 102.8 bits (255), Expect = 1.7e-18
Identity = 70/105 (66.67%), Postives = 80/105 (76.19%), Query Frame = 0

Query: 1   MSGFIEKIEEKLHIGGGHKGDEHHKSGDHHKGDDHHKSGEHGAKA---GEHHKEGIVDKI 60
           MSG +EKI EKLHIGG HKG+  HK G+HH+ D H    +HG K+   GE HKEG+++KI
Sbjct: 1   MSGIMEKIGEKLHIGGDHKGE--HK-GEHHEKDKHEHEKKHGEKSEHHGEGHKEGLMEKI 60

Query: 61  KDKIHGDGHDHDHKGEEKKKKKEKKKKEGEHNHGGH-SSSDSDSD 102
           KDKIHG G  HD KGE+KKKKKEKKKK GEH  GGH SSSDSDSD
Sbjct: 61  KDKIHGGGDHHDEKGEKKKKKKEKKKK-GEHQEGGHSSSSDSDSD 101

BLAST of MS023825 vs. NCBI nr
Match: XP_008443295.1 (PREDICTED: protein SRC1 [Cucumis melo] >KAA0053854.1 zinc transporter ZIP6 [Cucumis melo var. makuwa] >TYK25548.1 zinc transporter ZIP6 [Cucumis melo var. makuwa])

HSP 1 Score: 98.2 bits (243), Expect = 4.3e-17
Identity = 68/104 (65.38%), Postives = 79/104 (75.96%), Query Frame = 0

Query: 1   MSGFIEKIEEKLHIGGGHKGDEH--HKSGDHHKGDDHHKSGEHGAKAGEHHKEGIVDKIK 60
           MSGFIEKI EKLHIGG HKG+ H  HK G+HH  D+H K  +     GE HKEGI++KIK
Sbjct: 1   MSGFIEKIGEKLHIGGDHKGEHHDAHK-GEHH--DEHKKHEKKEEHHGEGHKEGIIEKIK 60

Query: 61  DKIH-GDGHDHDHKGEEKKKKKEKKKKEGEHNHGGHSSSDSDSD 102
           DKIH GDGH HD KGE+KKK+K+KK + G  +HGG SSSDSDSD
Sbjct: 61  DKIHGGDGH-HDEKGEKKKKEKKKKGEHGHEHHGGDSSSDSDSD 100

BLAST of MS023825 vs. ExPASy Swiss-Prot
Match: O04132 (Protein SRC1 OS=Glycine max OX=3847 GN=SRC1 PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.0e-17
Identity = 70/112 (62.50%), Postives = 77/112 (68.75%), Query Frame = 0

Query: 1   MSGFIEKIEEKLHIGGGHKGDEHHKSGDH---HKGDDHHKSGEHGAKAGEH--------H 60
           MSG I KIEE LH+ GGHK +EH   G+H   HKG+  HK   HG   GEH        H
Sbjct: 1   MSGIIHKIEETLHV-GGHKKEEH--KGEHHGEHKGE--HKGEHHGEHKGEHKGEQHHGEH 60

Query: 61  KEGIVDKIKDKIHGDGHDHDHKGEEKKKKKEKKKKEGEHNHGGHSSSDSDSD 102
           KEG+VDKIKDKIHGDGHD   KG EKKKKK+KKKKE  H+H GHSSS SDSD
Sbjct: 61  KEGLVDKIKDKIHGDGHD---KG-EKKKKKDKKKKEHGHDHHGHSSS-SDSD 102

BLAST of MS023825 vs. ExPASy Swiss-Prot
Match: Q9SLJ2 (Dehydrin HIRD11 OS=Arabidopsis thaliana OX=3702 GN=HIRD11 PE=1 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 6.0e-14
Identity = 57/104 (54.81%), Postives = 67/104 (64.42%), Query Frame = 0

Query: 1   MSGFIEKIEEKLHIGGGHKGDEHHKSGDHHKGDDHHKSGEHGAKAGEHHKEGIVDKIKDK 60
           M+G I KI + LHIGGG+K  EH K  +H K  D HKSGE        HKEGIVDKIKDK
Sbjct: 1   MAGLINKIGDALHIGGGNKEGEHKKEEEHKKHVDEHKSGE--------HKEGIVDKIKDK 60

Query: 61  IH---GDGHDHDHKGEEKKKKKEKKKKEGEHNHGGHSSSDSDSD 102
           IH   G  HD + K  + +KKK+K KKE +H+  GH SS SDSD
Sbjct: 61  IHGGEGKSHDGEGKSHDGEKKKKKDKKEKKHHDDGHHSSSSDSD 96

BLAST of MS023825 vs. ExPASy TrEMBL
Match: A0A6J1E1E0 (protein SRC1 OS=Momordica charantia OX=3673 GN=LOC111025058 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 7.6e-44
Identity = 99/101 (98.02%), Postives = 100/101 (99.01%), Query Frame = 0

Query: 1   MSGFIEKIEEKLHIGGGHKGDEHHKSGDHHKGDDHHKSGEHGAKAGEHHKEGIVDKIKDK 60
           MSGFIEKIEEKLHIGGGHKGDEHHKSGDHHKGDDHHKSGEHGAKAGEHHKEGIVDKIKDK
Sbjct: 1   MSGFIEKIEEKLHIGGGHKGDEHHKSGDHHKGDDHHKSGEHGAKAGEHHKEGIVDKIKDK 60

Query: 61  IHGDGHDHDHKGEEKKKKKEKKKKEGEHNHGGHSSSDSDSD 102
           IHGDGHDHDHKG EKKKKKEKKKKEGEH+HGGHSSSDSDSD
Sbjct: 61  IHGDGHDHDHKG-EKKKKKEKKKKEGEHHHGGHSSSDSDSD 100

BLAST of MS023825 vs. ExPASy TrEMBL
Match: A0A6J1I7B7 (protein SRC1-like OS=Cucurbita maxima OX=3661 GN=LOC111471920 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.9e-19
Identity = 71/105 (67.62%), Postives = 80/105 (76.19%), Query Frame = 0

Query: 1   MSGFIEKIEEKLHIGGGHKGDEHHKSGDHHKGDDHHKSGEHGAKA---GEHHKEGIVDKI 60
           MSG +EKI EKLHIGG HKG+  HK GDHH+ D H    +HG K+   GE HKEG+++KI
Sbjct: 1   MSGIMEKIGEKLHIGGDHKGE--HK-GDHHEKDKHEHEKKHGEKSEHHGEGHKEGLMEKI 60

Query: 61  KDKIHGDGHDHDHKGEEKKKKKEKKKKEGEHNHGGH-SSSDSDSD 102
           KDKIHG G  HD KGE+KKKKKEKKKK GEH  GGH SSSDSDSD
Sbjct: 61  KDKIHGGGDHHDEKGEKKKKKKEKKKK-GEHQEGGHSSSSDSDSD 101

BLAST of MS023825 vs. ExPASy TrEMBL
Match: A0A6J1IAZ2 (protein SRC1-like OS=Cucurbita maxima OX=3661 GN=LOC111473441 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 8.4e-19
Identity = 70/105 (66.67%), Postives = 80/105 (76.19%), Query Frame = 0

Query: 1   MSGFIEKIEEKLHIGGGHKGDEHHKSGDHHKGDDHHKSGEHGAKA---GEHHKEGIVDKI 60
           MSG +EKI EKLHIGG HKG+  HK G+HH+ D H    +HG K+   GE HKEG+++KI
Sbjct: 1   MSGIMEKIGEKLHIGGDHKGE--HK-GEHHEKDKHEHEKKHGEKSEHHGEGHKEGLMEKI 60

Query: 61  KDKIHGDGHDHDHKGEEKKKKKEKKKKEGEHNHGGH-SSSDSDSD 102
           KDKIHG G  HD KGE+KKKKKEKKKK GEH  GGH SSSDSDSD
Sbjct: 61  KDKIHGGGDHHDEKGEKKKKKKEKKKK-GEHQEGGHSSSSDSDSD 101

BLAST of MS023825 vs. ExPASy TrEMBL
Match: A0A5A7UF86 (Zinc transporter ZIP6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G007000 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.1e-17
Identity = 68/104 (65.38%), Postives = 79/104 (75.96%), Query Frame = 0

Query: 1   MSGFIEKIEEKLHIGGGHKGDEH--HKSGDHHKGDDHHKSGEHGAKAGEHHKEGIVDKIK 60
           MSGFIEKI EKLHIGG HKG+ H  HK G+HH  D+H K  +     GE HKEGI++KIK
Sbjct: 1   MSGFIEKIGEKLHIGGDHKGEHHDAHK-GEHH--DEHKKHEKKEEHHGEGHKEGIIEKIK 60

Query: 61  DKIH-GDGHDHDHKGEEKKKKKEKKKKEGEHNHGGHSSSDSDSD 102
           DKIH GDGH HD KGE+KKK+K+KK + G  +HGG SSSDSDSD
Sbjct: 61  DKIHGGDGH-HDEKGEKKKKEKKKKGEHGHEHHGGDSSSDSDSD 100

BLAST of MS023825 vs. ExPASy TrEMBL
Match: A0A1S3B8E4 (protein SRC1 OS=Cucumis melo OX=3656 GN=LOC103486916 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.1e-17
Identity = 68/104 (65.38%), Postives = 79/104 (75.96%), Query Frame = 0

Query: 1   MSGFIEKIEEKLHIGGGHKGDEH--HKSGDHHKGDDHHKSGEHGAKAGEHHKEGIVDKIK 60
           MSGFIEKI EKLHIGG HKG+ H  HK G+HH  D+H K  +     GE HKEGI++KIK
Sbjct: 1   MSGFIEKIGEKLHIGGDHKGEHHDAHK-GEHH--DEHKKHEKKEEHHGEGHKEGIIEKIK 60

Query: 61  DKIH-GDGHDHDHKGEEKKKKKEKKKKEGEHNHGGHSSSDSDSD 102
           DKIH GDGH HD KGE+KKK+K+KK + G  +HGG SSSDSDSD
Sbjct: 61  DKIHGGDGH-HDEKGEKKKKEKKKKGEHGHEHHGGDSSSDSDSD 100

BLAST of MS023825 vs. TAIR 10
Match: AT1G54410.1 (dehydrin family protein )

HSP 1 Score: 78.2 bits (191), Expect = 4.3e-15
Identity = 57/104 (54.81%), Postives = 67/104 (64.42%), Query Frame = 0

Query: 1   MSGFIEKIEEKLHIGGGHKGDEHHKSGDHHKGDDHHKSGEHGAKAGEHHKEGIVDKIKDK 60
           M+G I KI + LHIGGG+K  EH K  +H K  D HKSGE        HKEGIVDKIKDK
Sbjct: 1   MAGLINKIGDALHIGGGNKEGEHKKEEEHKKHVDEHKSGE--------HKEGIVDKIKDK 60

Query: 61  IH---GDGHDHDHKGEEKKKKKEKKKKEGEHNHGGHSSSDSDSD 102
           IH   G  HD + K  + +KKK+K KKE +H+  GH SS SDSD
Sbjct: 61  IHGGEGKSHDGEGKSHDGEKKKKKDKKEKKHHDDGHHSSSSDSD 96

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022158601.11.6e-4398.02protein SRC1 [Momordica charantia][more]
XP_022973362.16.0e-1967.62protein SRC1-like [Cucurbita maxima] >XP_022975607.1 protein SRC1-like [Cucurbit... [more]
XP_038903205.17.8e-1964.76protein SRC1 [Benincasa hispida][more]
XP_022974702.11.7e-1866.67protein SRC1-like [Cucurbita maxima][more]
XP_008443295.14.3e-1765.38PREDICTED: protein SRC1 [Cucumis melo] >KAA0053854.1 zinc transporter ZIP6 [Cucu... [more]
Match NameE-valueIdentityDescription
O041322.0e-1762.50Protein SRC1 OS=Glycine max OX=3847 GN=SRC1 PE=2 SV=1[more]
Q9SLJ26.0e-1454.81Dehydrin HIRD11 OS=Arabidopsis thaliana OX=3702 GN=HIRD11 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1E1E07.6e-4498.02protein SRC1 OS=Momordica charantia OX=3673 GN=LOC111025058 PE=4 SV=1[more]
A0A6J1I7B72.9e-1967.62protein SRC1-like OS=Cucurbita maxima OX=3661 GN=LOC111471920 PE=4 SV=1[more]
A0A6J1IAZ28.4e-1966.67protein SRC1-like OS=Cucurbita maxima OX=3661 GN=LOC111473441 PE=4 SV=1[more]
A0A5A7UF862.1e-1765.38Zinc transporter ZIP6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35... [more]
A0A1S3B8E42.1e-1765.38protein SRC1 OS=Cucumis melo OX=3656 GN=LOC103486916 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G54410.14.3e-1554.81dehydrin family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..101
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..74
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..101
NoneNo IPR availablePANTHERPTHR34941:SF4PROTEIN SRC1coord: 1..101
IPR039285Dehydrin HIRD11-likePANTHERPTHR34941DEHYDRIN HIRD11coord: 1..101

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS023825.1MS023825.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding